MSTRG.12394.1.p1 (mRNA) -

Overview
NameMSTRG.12394.1.p1
Unique NameMSTRG.12394.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000093_pilon:887481..892821-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12394.1.p1 ID=MSTRG.12394.1.p1|Name=MSTRG.12394.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5341bp|location=Sequence derived from alignment at sc0000093_pilon:887481..892821- (Clytia hemisphaerica_ch_hm2_pilon)
GTCCAACATATGTCTTCTTGTCACTTGTCTTCTAGATCTTCAACCTTCTC
TACCTTCTACCAGCACCAGGGTATGTATCTTCTTTCAGCAGACCTGGACT
GGGTGGCAGAGCAGATATTAAATAGATGTAGTAAATTACTATTACTATGA
GACCTTTTTTCAAAGAGGATGTCATGTTGAATAATTATGTAGTCCAGCCA
TAAAAACAATGATATATCCATGCATAATTACTGTATCATGCATATTGTAG
TAATTATTCATGGTTCATCATTGTTTTTCTGCTGGACTACATAATTATTC
AACAGGGTGGCCTCTTTGAAAAAAGGTCTTATAGCTATGCTATGGTATGG
TGTGAGATTAGATGTTTTTCATTTTTGTTATGTTGGGCAGTTGGGAACTT
TACACTTTATTTGGTATATATAAGCTGATTCTAATTACCTACCACACTCT
TTTTTGTTTTTTAGTAGAGAAAAATAACAGAAAATAGGAAGGTGGGAATC
ACAGATTGAAAAAGAAGATGCGATCTCTATTCTATCAAAGAAATAAAGTT
TCAATCAGCAAATAGTTGTTTGGGAAAACGCAACAGCCTAGGCATTGAGT
CAGTTTCGTATACCTATACTAGCTAAATAACTCCATCCATTCCGGGCTGG
AAATGGTGCACAGTATGTGAATATATTCAGAGTGAGGCAGTACCGTCAAC
TGCTCCACTTGGGGGCACTATCTGACAAAACATGGGACGGCAATTCGGCC
CCCATTTCACCGAAACTCCAAAGTCATTTGATTTGAGTTAAGGAAAGGCA
TATTAAAAAATACACAATTTCTGTTTTGATTTTACAGTTAGTTTATTTCA
GACCAGATATGCAACAGTCCCATGTTTCAACCAATTGTGCCAAATTAGAG
CCGCTGACGGTAATTACGTTTGGCGTATTGGCACAAGGAGCCGATATAAA
GTAAGATATTGGCGTAAGTCAAAGCTTTTCAAGACGAGAGAAGCACCCCC
ATTCTAACGCCCAATTTCATGACGCCGCAGGTTTAAAAATGCATCCACCT
AGCTCTCCCTTGACCACCATTGACCATATATATAAGGCCAAAAAAAAAGT
AGTTTTGTTTCCGGAAATGCGGGTGACGAAAAAAAATCTCACCCGGGCGG
CCGGAAAATATTTTTTTTTTCAATTTTCCTAGAAAAACTCTAATTGACTT
GTACGAAAAAATAATCCAGGTTCGATGTCTCTTTACTTGAAAAAACGAAA
TTTTAAGAAGAAGCTGTACTCTAAGGTAATTCTATTCACAACAACATAAT
ACAGGAAAGTAGAAAACATTTGTGACAGAAGATTTTCTTTTTCAAAACAC
AAGTGACATACGTAAACGCATTGCGTACAATTTTTTGCACACATAATGCC
TCGTGCACAACTAATACATATTGTTACTACGAAGAACTAAATAATGTTGA
GAAAACGTTTTGCGTTCTTTAGCTTACTTGTCTGAAATATTCAGTTTGAA
AAAAAGTTTTTTTTCTTCGATTGCACAAAAAAAAAAGTTTTTTTCTATTT
GCGGCCGGGTGAGATATATTTTTTTCCAAAAAAAAGTTCACCCGGCCGAT
TTCCGGAAACAAGACTACTTTTTTTTTTGGCCTAACAACGTAGAGTGTAA
ATATAAAGCTTACGAGCAACTTTTAGGGGTGAGAAAATGAAATAATCCCA
GGGCTGAACAGTCATTGTGTGACATTTTTTAAAACACAAAAAATTGACAA
AAATCTTTAAGGTTGAATAAAATCAACTCAAATTAATTACAAGCCTTGAA
ATTTTGACTGGTAATAGGAAATTTAATTACCTTTTCAAAAATATATTTAT
GAAGCCATTCTTTATGATAGCAAAACGACTTAGGTACTAAATGAATTACC
CTTATATGTTCAAAGTAAAGTATGTCACTCTTTGTCACAATCAATTTTTT
GAAAATAATGTACACAAAAATTAATGTTTCAATACTGCACGTCCTATAAC
ACTCAGTGGTTAAAAATGAACAACTTTAGGTGTTGATTGTGCCAATAAAT
GACTTACTTTACGAGTAAAAAAGTAAAATATGTCATCCTTAAAGTAAGTC
ACTTTTTGTCACATTTTGCTTCTGGGTATAATTCGAAATATAGTATTTCA
ATTTAGGTAAAAATTAAAGCATTTTAAATTGGGAAATATATCTGGCTTAT
TAACCATATCAAAAATATAGACACTGTGCACAATGTGCCCTGTTTCTATG
AGACGTTTTTTGTGAGCCTTCAAAAATGTTACAAAACCAGTACTAATTTT
TGAAACGGCTCGGCTTTCGGGGGGTTTGCCCCCTAAACCTCCATCAGGGC
TAAGCCCTGGACCCGTTTGGGGCACTGGATTACACTGCCCCAAAACCCAG
TAATATCGCTGTTCTGTTCTTTTGGCTTAAACCTCAGTTTTAACGAATAA
CAATTCGGTGTGGGCTTTGCATCATTTCCACACTGGCATACATTGGGCCT
GGAAATTAACTGTATTGAATTAACTGATTGTATCAAGTGTTGAGTCTGGG
GTATCCCTAGATAGAACTTCTGCTAGTTGAAACGTCATGTTGAATAATTC
AAAACTCCAGCATTAATAAAACAATGATAAGAAAAAATTAATAATGTATA
CTTGAACTAATTAAAATTATGAATTCATCTGTCATTGTTTTGATGCTGGA
TTTTTTAATTCTTCAGCATGAGATCTTAACTAGCAAAATGTCTTGGCATG
TCTCCTTTTTCTTTAATATATTTCAAAAAAGTACAAAGAGTACTAAGGTA
CAGATTGGAGAGAAATATTCTGCTGTTGAGTAGCATAAAGCAACTGCTGC
TTTGTGTATCGTACCAGTGCTTTCAGATCTTAATAAAACTGTTTATCATA
TACCTTTAACAGGTATATTATACAACAAAATATAATGTCATCGCACAAGG
CAGTAGAGCATACAGCTGCAAATCTGGATGGTTTATGGACAGTAATAGCA
AAAACGAGGAACTTTGATAATGAAGTTTCATCTTCCAAGAAAGCTATTGT
TGTCATTCCTGGTAATCCTGGTTTGGTTGAATTTTATGAATTGTTTATGG
AATGTTTGTACAAGTTAAAGGGGATTCCAATTATCGGTTTTTCACATGCA
GGTATAAATGGATTTCTCTTTTTTATAAGAACCATTCAATTTTTATTAAG
GGTCAGTTACTTTTTTGGATGTACTTTGAGTCACAAATTGTAAATTTTCA
AAAACTCTCTGCGATTCCAGTCTTTTTCGTAATGTATGGTATTTTTAAGC
CTGCCTTACTGTTCTTATATAAAGTGTGAATACTCTTTTTCTTAAAATTA
ACATGAAGACAAAAAGTAAATCCAATTCTGCTCATCATGTTGTTTCGATG
TGATCCTGATGTGAACATCGAAAATCTAAAAGCTAACTAAGCAAGTTTCA
CCCATTCTCTATCAAATACACGTTTTTTTATAATAACATCCATAATATTT
TTAGCCTTTGGGTGTTCTTCTAAGCTTTTTGAGTTTTTAAGCTGAAAAAA
AACGTTATTAAAATGTTCTGAATTTTAAACCATTTTGTGAGTGTTTTTTT
CACACTTCCTAACTTGTTCATAATATCTTGGCCATCAAACCCTTTTGTTC
ATATAGTTTGTTCTTATGTGAAACAATGAAACAGAAAAAACAAAAACAGT
TTTTTTGTACTAATAGTTTCACAACCTTCTTCTGGGTTGATCATCAGCAA
ACTCTTTTTGTTTGTTTGCTGATGATCAACCCAGAAAAGGATTGCGAAAA
TATCAGTACAAAAAACTGTTTTTGTTTTTTTCTGTTTGACTTAAAAATTT
CTACTATGAATAAGAAGATTCTCCACAAGTTTGTTCTTATAAAAAACGTG
TTTTCCACATCTCAGGACATTCACCGATCCACCCATACACAGATGAACCA
ATGAGAACTCCTCCATTAACCTTGCAAGAACAAATTCAACACAAGAAGGA
CTGTGTCCGACAATTCATTCCTGACGACTGCAATATCATCTTTATCGGAC
ATTCCATAGGAGCTTATATTATTCTACAGCTTATGGACCATATACCAGAA
AGGTGAATACACTCTTCTCAAAATAATAAGGGGCAAGGCTTCGGATCCGT
AGAATCTTTCGTAGGACACATTCGCGTGTGATTGGTTTGAAAGTAGATAG
AATTTCGAGACTTTTTTGAGAAGGGGCATAAAAGGCTTGGCAACCAAAAG
TTTTTAGGGCGATTTTTTATCCCCCGCCAAATAGTAAAATTTGACGATTT
TTTAATGTTTTTACTGAGTTTTGATTCTCCTACTTGGATTTTTAAAAGTT
AAAACCCTTTGTTGATAATTTTAAAAAATACTTTGACTTTGAAATAGTTT
GTTTGACCTGAAAATATGAAAGATAATGAAGGAAAAGTGTTTGCTCAAAA
CTTGTTAACGATTATTCCTAAGATGATAGTGGAGAGACTATAATACATTT
TAACACCTATCTTTTATAGATCGCTTCATGGTATATTACTCTTCCCCACC
ATCACGAACATGATTGGAACAGTTGACGGAAAATTCTGGAATCTGATAAC
TTCATATCTCAAACTCCCTTTACTATGGACTGCATATTTTTCCTCTTATC
TACCTTACGCCCTACAAGATGTTTTGATACGATGGCGTGCAAAATGGCGG
CAAATTGACGCCCCGATCGTACCAGTGTGCAGACGATGTGTCTCTTGGGA
CGTTTTAAGTCAAGGTTTCCGTATGGTCGAATGTGAGTTAGTAGAAGTCA
AAACTTTGAATCCGGAATTATCCCGGATTATACGACGATATTCCAATAAA
TTGACGGTTTATTATGGTGACGGTGACGCATGGACGCCTTTTTCTTTTTA
TGAGGAATTTATACAGAAATTTCCTGAAGTGAAAACTTTCTACGGACGTG
ATGGTTTTAAACATGATTTTGTACTTGACTCTTCGGAAGGTGTAGCGAGG
CTATGTAATAAGTTTATTGAGAAGTTATGATAGTTCATGATTATAAGCAT
CTTTTACATTTTTATCATAACCTAGCTTTAACTTCAGATATCCTCTATGT
ATAAGACACAGATTTGCAGCCGTTATAAGTTTTTTTACAATATTTGGAGG
ATGTACCGTGTTTCAATCCCGACTTATGGAAGATTTCGAAAATCGTTAAA
ACTCATTTTCGGGTCAATAACTTTTTGCCCAAGGTGTAAAAATCGACTCT
ACCCCACATTCGAAAGCAGATAAAATTATCTTTCCAACGGTGTCTAGAAA
CCTTCTATTCGAATTTTTTCTAGGTTGACTCTATTTTCGAC

Coding sequence (CDS) from alignment at sc0000093_pilon:887481..892821-

>MSTRG.12394.1.p1 ID=MSTRG.12394.1.p1|Name=MSTRG.12394.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2745bp|location=Sequence derived from alignment at sc0000093_pilon:887481..892821- (Clytia hemisphaerica_ch_hm2_pilon)
ATCGCTTCATGGTATATTACTCTTCCCCACCATCACGAACATGATTGGAA
CAGTTGACGGAAAATTCTGGAATCTGATAACTTCATATCTCAAACTCCCT
TTACTATGGACTGCATATTTTTCCTCTTATCTACCTTACGCCCTACAAGA
TGTTTTGATACGATGGCGTGCAAAATGGCGGCAAATTGACGCCCCGATCG
TACCAGTGTGCAGACGATGTGTCTCTTGGGACGTTTTAAGTCAAGGTTTC
CGTATGGTCGAATGTGAGTTAGTAGAAGTCAAAACTTTGAATCCGGAATT
ATCCCGGATTATACGACGATATTCCAATAAATTGACGGTTTATTATGGTG
ACGGTGACGCATGGACGCCTTTTTCTTTTTATGAGGAATTTATACAGAAA
TTTCCTGAAGTGAAAACTTTCTACGGACGTGATGGTTTTAAACATGATTT
TGTACTTGACTCTTCGGAAGGTGTAGCGAGGCTATGTAATAAGTTTATTG
AGAAGTTATGAGACATTCACCGATCCACCCATACACAGATGAACCAATGA
GAACTCCTCCATTAACCTTGCAAGAACAAATTCAACACAAGAAGGACTGT
GTCCGACAATTCATTCCTGACGACTGCAATATCATCTTTATCGGACATTC
CATAGGAGCTTATATTATTCTACAGCTTATGGACCATATACCAGAAAGAT
GTCATCGCACAAGGCAGTAGAGCATACAGCTGCAAATCTGGATGGTTTAT
GGACAGTAATAGCAAAAACGAGGAACTTTGATAATGAAGTTTCATCTTCC
AAGAAAGCTATTGTTGTCATTCCTGGTAATCCTGGTTTGGTTGAATTTTA
TGAATTGTTTATGGAATGTTTGTACAAGTTAAAGGGGATTCCAATTATCG
GTTTTTCACATGCAGATCGCTTCATGGTATATTACTCTTCCCCACCATCA
CGAACATGATTGGAACAGTTGACGGAAAATTCTGGAATCTGATAACTTCA
TATCTCAAACTCCCTTTACTATGGACTGCATATTTTTCCTCTTATCTACC
TTACGCCCTACAAGATGTTTTGATACGATGGCGTGCAAAATGGCGGCAAA
TTGACGCCCCGATCGTACCAGTGTGCAGACGATGTGTCTCTTGGGACGTT
TTAAGTCAAGGTTTCCGTATGGTCGAATGTGAGTTAGTAGAAGTCAAAAC
TTTGAATCCGGAATTATCCCGGATTATACGACGATATTCCAATAAATTGA
CGGTTTATTATGGTGACGGTGACGCATGGACGCCTTTTTCTTTTTATGAG
GAATTTATACAGAAATTTCCTGAAGTGAAAACTTTCTACGGACGTGATGG
TTTTAAACATGATTTTGTACTTGACTCTTCGGAAGGTGTAGCGAGGCTAT
GTAATAAGTTTATTGAGAAGTTATGAGACATTCACCGATCCACCCATACA
CAGATGAACCAATGAGAACTCCTCCATTAACCTTGCAAGAACAAATTCAA
CACAAGAAGGACTGTGTCCGACAATTCATTCCTGACGACTGCAATATCAT
CTTTATCGGACATTCCATAGGAGCTTATATTATTCTACAGCTTATGGACC
ATATACCAGAAAGATGTCATCGCACAAGGCAGTAGAGCATACAGCTGCAA
ATCTGGATGGTTTATGGACAGTAATAGCAAAAACGAGGAACTTTGATAAT
GAAGTTTCATCTTCCAAGAAAGCTATTGTTGTCATTCCTGGTAATCCTGG
TTTGGTTGAATTTTATGAATTGTTTATGGAATGTTTGTACAAGTTAAAGG
GGATTCCAATTATCGGTTTTTCACATGCAGATCGCTTCATGGTATATTAC
TCTTCCCCACCATCACGAACATGATTGGAACAGTTGACGGAAAATTCTGG
AATCTGATAACTTCATATCTCAAACTCCCTTTACTATGGACTGCATATTT
TTCCTCTTATCTACCTTACGCCCTACAAGATGTTTTGATACGATGGCGTG
CAAAATGGCGGCAAATTGACGCCCCGATCGTACCAGTGTGCAGACGATGT
GTCTCTTGGGACGTTTTAAGTCAAGGTTTCCGTATGGTCGAATGTGAGTT
AGTAGAAGTCAAAACTTTGAATCCGGAATTATCCCGGATTATACGACGAT
ATTCCAATAAATTGACGGTTTATTATGGTGACGGTGACGCATGGACGCCT
TTTTCTTTTTATGAGGAATTTATACAGAAATTTCCTGAAGTGAAAACTTT
CTACGGACGTGATGGTTTTAAACATGATTTTGTACTTGACTCTTCGGAAG
GTGTAGCGAGGCTATGTAATAAGTTTATTGAGAAGTTATGAGACATTCAC
CGATCCACCCATACACAGATGAACCAATGAGAACTCCTCCATTAACCTTG
CAAGAACAAATTCAACACAAGAAGGACTGTGTCCGACAATTCATTCCTGA
CGACTGCAATATCATCTTTATCGGACATTCCATAGGAGCTTATATTATTC
TACAGCTTATGGACCATATACCAGAAAGATGTCATCGCACAAGGCAGTAG
AGCATACAGCTGCAAATCTGGATGGTTTATGGACAGTAATAGCAAAAACG
AGGAACTTTGATAATGAAGTTTCATCTTCCAAGAAAGCTATTGTTGTCAT
TCCTGGTAATCCTGGTTTGGTTGAATTTTATGAATTGTTTATGGAATGTT
TGTACAAGTTAAAGGGGATTCCAATTATCGGTTTTTCACATGCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12394MSTRG.12394Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12394.1.p1MSTRG.12394.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12394.1.p1.exon4MSTRG.12394.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12394.1.p1.exon3MSTRG.12394.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12394.1.p1.exon2MSTRG.12394.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12394.1.p1.exon1MSTRG.12394.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093_pilongenomesc0000093_pilon:887481..892821 -