MSTRG.12387.1.p1 (mRNA) -

Overview
NameMSTRG.12387.1.p1
Unique NameMSTRG.12387.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000093_pilon:767029..769899+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12387.1.p1 ID=MSTRG.12387.1.p1|Name=MSTRG.12387.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2871bp|location=Sequence derived from alignment at sc0000093_pilon:767029..769899+ (Clytia hemisphaerica_ch_hm2_pilon)
gatttttcattgttGAAAAAGAACACGACAAGCCTAGTTGAAGAAACATT
TGACTCAAACATCACAAGAAGTTGCATCGCTTTTTACGCACAAGATTcag
aaaaaatgatgaaatttttgttcGTTATTGTTGCCTTAACAGTAATTTAC
GGTAAGGAAAACATTGATATAAATTTTATGCCATATTAAAGGAAACAATC
TTGGCGGGATTTTGATTTGTTAGGTCAAAGTtctttcagagggaatttaa
ttagGCGGAtggtataaaaaaattgaatttggctGGATTTAAATTTGACG
TATGAGATttctttgattgaaaaaaaagcttATTTTGGCGGGTTTTGTTT
GGCATATCCACCAAACTTCTATACCGCCGAAGTATCTTCGTTTTAGATAT
GTTTTATGAGAGAGTAAATCTCGTACAAACAGAACTGCAAAGATCGGATA
AATATTCGCTAGATTCTATTTCGTGAGCCAATTAAATGatataatttgat
gaatttattACAGGCAGCGATTCGAAAATTTTGGGTTATGGGTTCAATAT
TCCGAATCAATAAATAGCCATTTAGTGATGGCCGTAAAAGCATCAATTTT
CGTTAAAAATTGCTAATTTCTTATTCCCAAAATCTGATTTTAAAGGTTTC
GCGTGGAATTATTTTCGCGAGTCAGCGATCTCAAAAGATTTTTGCGACAT
TTAAAAATACCGGTTAAAGGTAgttgaaaactaaattttggaATACTAGA
GGCCTAATGAAtatcagaaaaatatatatactcTTCATTTGCTTTGGAAT
TTCAGGATCGGCATTGGCAAAGCCTACATACGAAGATGGTAAGAATTTTC
ATAACACATTTCTTTTTCATATGAGAATATAAGAGCACAattggctcttc
cagaaaatgtccgtacatgccTTGTCCGGTAGGTAAATTTTCtctgtcca
ggggtaatttgggttgtccggggggtcaactgatgcttgtcggaggtaaa
acccgttgtccgcgggggcaaaagtcactttgtccggttaaatcactgaa
aaattttatatcctccacccccatattcaatttttttctggaaaagccca
atgcttCGGTGTCAAATATTAAAGACCATTTTAGGAACAGTTTAAGGCTT
TGCGCGGGCTCTAGAACAGGCAGTTTCTGAAGTTTCTGAGGACAGGATTG
TTGTTCTTAGGATTTGATCAAGATTGAGGGCGATGTTCTTTTAAAGAGTG
TAATATCTATCGTTTGCATCTTAAATGGTAGAATCTTACTCGGGTTAATT
TCGTTTCTAGAAACACTGATGAATGGGCTTCCTCAAGGTAGGACTCAAAA
AGTAACATTCGAATATGGTCAATAACAATACGTTTTCGTTCACTTTCAAA
TAATCAGCGCCCTACGCTATCAAGGGTGCAGCAAAGCAATGGCCcctcac
ttttttttcaaataaaaagtcattttcaaaaGTATCACGATTTTATACTT
TAAATGACTTCATTTTTGGGCAAATCATCCTGAAAAGTGGCCGTTTTAAT
GCAAATTAGGGGGtaacaatcaaaatttattttctctcGCTGGTGCAAAA
AATGGCTGCGCTTCCTTTGTCACTATAATTTTCAGATTAAGACATGGGCA
CAAATTTCAGTAAAGCCCGAAAgactagatggagtgctttgaCTGAAGAG
TTTGCCGTggtgacattacaatataattttagcagttgaccaataagaag
ctttgcGGATTtccgaaaacaatagcaacaatattttttgagaTATTCAC
TTTTGCTTGTTTGGAAAAGTTTAAAGTACTCTATTTAGCCATTCGGGCCT
TACAGGAACTTGTAGGCATAGGCACTGTTAattattcttttgtttacttt
caatCttatttacattatgatgaattattgaaaatcattttttgatttat
tttatcaatattattgatcattgatACAGCCCGTGTATGGTAATAAAGGT
CATATGAACATCATTGATACACATTGACTTAACATTCAAATTGAATGCTG
TCTGATCTGCTAgtgtaaggcgagaccaatttgattagttgatATACGGG
CCCAACCATCCCTGAAattctaaatatcaaaataaaaataaaaataaaat
cgattttgtactaccatttctattttcattgctttacagactcccaaatt
ttaaaattttggtagttttttcaaggttttgagaattttatttccagttt
ttcattttatccatgaattcgaaattttattttctatttcgcatttttgt
caagatttaGTAGGTGAAAatctacttttattttatctttttcgccgatc
gaccgaccctcttttttgggtagcttgacccctaaaacaacaaattaaat
tggcctcgcctgataaaaattttttacctTAATATTTTTAGAATATGGTT
ACATGAATGTTAACACGAACGATATTAttcgacaacaacaacaaaaagat
cCATCATGCGGCGACAAAGCCCCAAATTTTGTTTGCAATATGCAGTTCAA
TATTCATGATTTCTCGTGTCCTCAAGATGGTAGTTTCAATTTCGCTGAGA
ATTGCCGACATTTTTGTCGAAtgtgttgatatttttttttcaactgaaat
ttaaaaatattgaacatACTTTGTATTATATAAATGGAACAAAAAATTAT
TActaatattatttttcaataattaataGCATAGCCCTTGATAATTTAAG
TTTCAATTTCAACTAAACTTCAAATTGCGAACTAATATCCAATATTTCTT
GAGGACACAACTGTACTTActtcttttatctttttatttagaaaatataa
aaatatttcaaaaagatctaT

Coding sequence (CDS) from alignment at sc0000093_pilon:767029..769899+

>MSTRG.12387.1.p1 ID=MSTRG.12387.1.p1|Name=MSTRG.12387.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1116bp|location=Sequence derived from alignment at sc0000093_pilon:767029..769899+ (Clytia hemisphaerica_ch_hm2_pilon)
gatttttcattgttGAAAAAGAACACGACAAGCCTAGTTGAAGAAACATT
TGACTCAAACATCACAAGAAGTTGCATCGCTTTTTACGCACAAGATTcag
aaaaaatgatgaaatttttgttcGTTATTGTTGCCTTAACAGTAATTTAC
GGATCGGCATTGGCAAAGCCTACATACGAAGATGAATATGGTTACATGAA
TGTTAACACGAACGATATTAttcgacaacaacaacaaaaagatcCATCAT
GCGGCGACAAAGCCCCAAATTTTGTTTGCAATATGCAGTTCAATATTCAT
GATTTCTCGTGTCCTCAAGATGGTAGTTTCAATTTCGCTGAGAATTGCCG
ACATTTTTGTCGAAtgtgttgagatttttcattgttGAAAAAGAACACGA
CAAGCCTAGTTGAAGAAACATTTGACTCAAACATCACAAGAAGTTGCATC
GCTTTTTACGCACAAGATTcagaaaaaatgatgaaatttttgttcGTTAT
TGTTGCCTTAACAGTAATTTACGGATCGGCATTGGCAAAGCCTACATACG
AAGATGAATATGGTTACATGAATGTTAACACGAACGATATTAttcgacaa
caacaacaaaaagatcCATCATGCGGCGACAAAGCCCCAAATTTTGTTTG
CAATATGCAGTTCAATATTCATGATTTCTCGTGTCCTCAAGATGGTAGTT
TCAATTTCGCTGAGAATTGCCGACATTTTTGTCGAAtgtgttgagatttt
tcattgttGAAAAAGAACACGACAAGCCTAGTTGAAGAAACATTTGACTC
AAACATCACAAGAAGTTGCATCGCTTTTTACGCACAAGATTcagaaaaaa
tgatgaaatttttgttcGTTATTGTTGCCTTAACAGTAATTTACGGATCG
GCATTGGCAAAGCCTACATACGAAGATGAATATGGTTACATGAATGTTAA
CACGAACGATATTAttcgacaacaacaacaaaaagatcCATCATGCGGCG
ACAAAGCCCCAAATTTTGTTTGCAATATGCAGTTCAATATTCATGATTTC
TCGTGTCCTCAAGATGGTAGTTTCAATTTCGCTGAGAATTGCCGACATTT
TTGTCGAAtgtgttga
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12387MSTRG.12387Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12387.1.p1.exon1MSTRG.12387.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12387.1.p1.exon2MSTRG.12387.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12387.1.p1.exon3MSTRG.12387.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12387.1.p1MSTRG.12387.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093_pilongenomesc0000093_pilon:767029..769899 +