MSTRG.12313.3.p2 (mRNA) -

Overview
NameMSTRG.12313.3.p2
Unique NameMSTRG.12313.3.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000092_pilon:885036..892301-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12313.3.p2 ID=MSTRG.12313.3.p2|Name=MSTRG.12313.3.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7266bp|location=Sequence derived from alignment at sc0000092_pilon:885036..892301- (Clytia hemisphaerica_ch_hm2_pilon)
TGTATTGATTAGCGTGAATATGTACTTGCGGCGAATTTTTAGATCGGCGA
ATTATCATATTTTCTTGCCTTGGACCGGCGAAATTCACCGTTCGCCGGGC
CTAGGTGAATTTGGATCAATTTTTCACAAACTAATTTTTGGGTTGCTTAG
CTGGCTTGAGCTTATTTGGCTTTGAAGTAAAGTATAGGACATCGATTTAA
GGCTGCCTGGAGATCATAGTGATCTGGTGTGTTAATTACAGTACACTCTA
GTTAACTCGAACCTCGATGACTCGAATGTGTTATGAACTAATCGCATTCC
GTGCCATGAAAAAAATTCTAATAAACTTTGGTGAAATCGTGTCCCCACAA
CTGAAAATCCGAGCAGAGCTGACCTCTAACAAACCCTGGAGTAAGCTATT
TTTGCCATCTTTGATCGGTACCCTCAAACCTCAAACAAGCCGTTGCAGTT
TTCAGATTTTGCCAAATGCTCAACGGTGCTACAGCACAAGAAGTATTGAA
GGAGAAGTAGATCCAGCACTCTCGATGCATTACACTGCTATTACAGTAGT
ACAGTTGAGTCTCTTTAACTCGATCTTCTATAACTCGATGTCTCCTTAAC
TCAACCATGTTTTTTCTCCCCTTAAGTTTGAGTCTATGGAGACTCCAATG
TATTTCCATTAGAGTACCACTTCAAAAAAACTCCGAAAAAAAGATACTGC
TTGTCTGGGTTTGAGCAACTGCTTTCATGGTTTCAAGCTTAAGTGGATTA
GAAAAATTTTGTGTTTTGTGAAAATAAAGAATACTACCATTTAAAATCAC
TTTCATTTTGAAAACAAATTTGAACTGCTGGGTATATACGATAAACGTTT
GCTGTAAAAATAAGAGGCGGGTCTACTTCTTGAGAGTTTTATGGAGCATG
TTTGCACAGTGATATGGTTTCTTCAGAAAATTCTCATATTTTGTCAAATC
CAAAAATAATTTTGAGAGAGATTTACAAACTGTAAAAGATTAGTTTAGTA
CTTTTCCTATTGGATTGACCTCTATTCAAAATCTGATTGAAGGGTCAAAA
GTTTGAGATCGTTTTGGAAGAGCTTTTCACGATTTCTAGATCTAGATTAT
TATGAGCTATTGTGATACGAAGGAGATACATGTTTTTTTATAAGAACACT
CAAAATCTTTGAAGCATTTGGATTTCTTAACTTTCTGAGTTTTAAGCCTA
AAAATGTTCTTAACATGTTCTTATTTTCACCATTGTATGAACATTTTTAA
GCAACCGGGAGTTTTAAAGTTTGAAAAGCCTTAAAATGTTTTTAACTTGT
TCTTAAAACTTTGGCCATCGAAGTCTAATGTTCTTATATGATTGTTCTTA
TAAAAAAACGTGTAGACCGAGGTCATGGGTTTTTTCTTAAAATCTCTACT
CAAAAGTTGTAATCTAAAAAGACTTTTGTCAAAGATGATTTTAGAGGGTC
AATTTTGATTATGATACTTCAGGGTGTGTGATCTTTTACAGTTTTAATCG
ATAATCAAAATCCTTATTTTGCTCTATCTAGTTTATTTGTACATTAAGGT
TAAAAAAAGAATACTAGATTTGAAAGAGACTATGTCCCAGGCTCTTTAGA
CATGAAATTGTTTGAATTTTAATCAAGTCCCAAGCTGGCACACAACGTTG
TTTCAACATTCATCTAACGTTACATATGAACGTTGTAAACATTAGAAAAT
GTTGAAACAACGTTATGTGTCAGCTGAACGCAAAAATAAATGGAAATTTT
GAGTATTTATGAGCTTTTAGATCCTGAGATCCTGAGATCCTAAGTCTCAT
GTTAAAAATCTACTTCCCAACCGTACTTCAAAAAACGTAAGAATCACTTG
AAGGAATTCCCCTTTTGTGCCAAATATTATGGCAGTGATCATGAACTAGG
AATAAGAGACTTAAAGGTTTTGTTTTTATATAAGAGTAATATATTGTTTT
GCTTACTCATCAGTTTTAATTACAAGGTTTTTCACATTGGATTGATGCGG
ATGTGGAGCAAGATTGGTCAGAAAGAGGAAAAGAAAAACATTTTTTTGCT
TATATCAGCATAATATAACAATAGGCAGACACTGTCCTGATACGAAATAT
ATGTCTGATATGAAACGGGAACACTTATGTAAAAATAAAGCCTTTAAGTT
ATCGAAATAACGGAGGGGCAATACAAATTCTCAACAAATTCACCTTTCTT
TAATTCCTTATTTCCAGGATGATATTGGAGATTGTGACGGTTCGCTTGGA
GATAAAATTTACTTTGTCGCGCGGTCGAACCACGGCAAATTCATAACAAT
AGACACTATAATGTCCATCTCGCGAGGAAAGTTTCAACGAATGTCCAATT
TGTTCGCTTCTGCATCCTTAGAGGACTTAACCAGACCTGGTAAAAATCCT
CTACGGAAACGTACCAAATCACAAACGCACTTATTAGCTTTAGCCGGAAC
TGAAAGTTCGGAATCAACGGAAAATAGTCCGGTCGTGTCAAAGAAAGAAC
CAATTGTTGATTTAATTAAAATGACTTCAAGCCCCCTTTTATCAAAAGTC
GGGTTCAGCTCTCTGAGTGAAACACGGAAAACAGATAATGTGAAAATGAG
ATTGAACTACGAAAGTGCGAGGACGGCAGGACATAAAAATCGGAACTCGA
ATTCAAGTTCAGGCTTACGTGGAATGAACCTAAAACATTTAGAAGCGGTT
GCTTCACAGTCTAACAGAAGAGAAACTAGCCCGGATAGTCTAAATAGCTC
AAACCCAGACTCTTCAAACCTCATGAGAAACTCGAAAACTACTCTTAAAA
CGGATAATGATAAAATTGAACTTCAACATCGCGAATCTGGCGCTAGATCG
CTAGAAGACGAAAGACCTAGCGCAAACGCTGCTTCAAATTCTTCCTCGCA
AAGCAACAACGCTTCTTCTTACCCAGGATGCAACAATGAAGACGCCGAAT
CGCTTTCAAGTGATCTACACGTGGATTCGCGGGTTGTCTTTTTTGACGAT
TCTGGGATACCTTTGCATGGTACTATCAAATATATCGGAACTTTTGATGA
CGTCATTCAAGTAGGCGTCGAGTTGGTGAGTGTATTTCTGTTGCTAGTTA
TGTTGATAAATGTATGGTTTATTTTTCAAGCTTTTGCTAACGGTACAAGA
TGAATGGAAATTTGGTAGCTTAATTCTCAGTTTGTGAAAGAAAAATTGAA
ACAAGTCGGTGTATGGACGAGGCATTGTAAGACTTTTCCAGAAATTTTCT
GTATCCCCCCCCTGTAGAGGATATCCATTTTTCGATTTCCACAGCCCTTT
GGATGTCTGGCTAAAGATAAAGACCCCCTAGATATCCTGGATGTCCAAGT
TGATAAAAGGATCGAGGATGTCCAGACATTTTGTCCTGTACACCCTAGAT
ATCCTCTATCTCTTATAAGGTCCTACCCCCTGAATATCAAGATAGCATTG
AACCCCCTGGATGTCTGATATACTCAATATGAGGGAGCACTGACTATTTC
TGGAAAAGCTCATTGGCATAGTTCAGAAATTAAAATTCTGTCTATTTTTT
GTCAACAGTCAAAAGCTGCTTACATTATCTCTGAACTTCTCTCTTATAGG
ATGCTCGCATCACAGAATCGGATGGCAATTTCAGGGATGGGAAAAAGGTT
TTTGATTGTCCTTCGAACAAAGGGCTACTTTGCAGACCAGAAGAATTGAT
CAAAGAGGACTTGATGGAAATGCAGATGAATCAAGGCATGGGGAAAATCA
TTGTTGATACGCCTTGTAAGTTTTTTTTCAATGGAACAAAGTGAAACTTA
CTAAAATTGCAATCCTCACCCGACCTTATTAAACGTTAAAATACCCAAAA
TTGCCAATATATTTCGGCGCTGACTGTAGAAGCTATTTCAAAAGAACATT
TTGCATCATATTTGACATCCTCTATTTTATTATGATTTCAGTTTACAGTG
CACCAGAGGTTGATCAAAATCAAAATGTCGTGATGGTTGAAAAATCAGGT
AAGCATTATCATCTGATCTCTAACTTCTCAACTGGATCGGGTTTGTTATA
ACAATGAAAGTGTGAAATCATGATGTGTCTGAGCTGTTTTCATTTCTGAT
CGTCAACAGCGCGATTCGAATGTTTTGAAATTCGAACATTCGAAAATCTA
AGGTAAATTAAAAAACAATATGGCGGGTGGACTAGTCGACTTTATCAATG
GATACACTTTCAAGGGAAATATGTGGGCAGTTATATTATAATCTAGTGTG
TAGATGAAGATGATATCTGTGTGGTATCTACACTTAACGAGAGGATTGGG
ATCTAGTTTATCAGGTTGCGTAAAGGCGTATTCAATATTATTGCATTATT
AGGGACTTTCTACAGGCCGGTCTCCCCTTGCGCGCGCTTCGATCGCACTT
TTTCGGGCAAAGCTACCACGCTATTGGTCAAAAGAAAAATGAAGCAACTC
CATTGGCGCAATCTGACGTAACGGGCTACATTTTTAAGATGTAATCTTTT
TTCCAAGTAAAAAGGATTGAAGCCAAAAAGTACGATCACAGCGCGCGCAA
GTAGAGACCGGTCTTACGTCGGCCTTTAATCCGCTTGAACTCACTTGTGT
TTCCCTTTAACAGCTAATTTCCAAAAATAGCATTTTCATTTCAAAATGTC
TCAAAATTTTTGCATAAAATTGAGAATATCCAGGAGTGAAGACAAGAGGG
GCGCAAAATTCCTTTGGAAGGGCAAATTTTTATAAAGCTATCATTATCCA
TTCATAACATAAAAAGATAATTACTGTTTTATAAAAAAATATGCTCTCCA
ACACACATTTTGTGTTTTTCGTGCGTTAAAAAAATTCGCTAAGAAATTCG
CTAAGCGATTTCAGTTTCATTCTTATTTCTCTAGACGATGATTCTTCATC
CGCGCGGAAGAAGAAAGAGAGAAGCAAATCATCAGGTAAGGAAAAGACTT
TGAAAAAAAATTTAAAGTTCCTTTCTGTCTGCTGGTTTTTTGCCCTGCCC
TTATTTTGTGGACTTTTTGAATTTACATCCTACCTTTTAAATGAAGATGA
GCTGGTGTCTAGCAGTGCGGTGTGTGGTTGGGAAAATTCGATTTATATAT
ACCACTTGAATTTAATTTATGAGATAGAATGACCGTGATCAGAAATATTG
AAGCCACTTATTTTCAACCTCTCTTAGCTTCGACTCGAAACCTGGATTTC
GATTCAATGCATGTACCTTAAGGGAAGAAATTTTCGCGTAATGTAATTTC
GCGAATCAGCGTTTCAAAATGGCAAATTTCGCGAATCAGCGTTTCAAAAT
GGCAAATTTCGCGGAATTTAATTTCGCGAATGAGCCGATTTCAAAAGTCT
CACGGAATTTAATTTCGCGATTGAGAAATTTCAAAAGAATTTTTTTTACA
GAGAAAATGTTTTTCATATTTTTCATCGATTTCAAGACATATTTCAGTCA
CATTAACAAACTTTAACAACAAAATAATAACATCAAATATGAATGTTTCT
ATGATAAGTCATGGTCTTCATGGTAGTCTTCATGGTAGTCTTCCTCCAAA
AATCGAAAATATTTTGCACTACTTCACCTTTCGCGAATTACGCCCAAATT
CGCGAAATTAAATTCAGCAAAAATTTCTTCACTTAAGGTACCCTTTAAAT
TTGAGTGATCGTAGTGCAATGATCGAGAGGATGTGGGTTCAATCCCTGAC
CCGGTCATACTTAAGACTTCGTACTTAGTACAAAAATAGTACTTGATGCC
TACAATTAAGGGAAAGAGCAAGAGTGATAGGAGCAATCCAGGGAGAAAGG
AGACCTCGCTTACATTCGGGTAGATAGCTATCGAAGGAGGAGCCTTCGGG
GCGCGTTTGACTGTGTTCGCGGACTTTAAAGGCTTTGGGACACGAGAAGT
TTTTTTCACGTTAGTGCAATGCAACATACTCCAACCCACCAACAAAAAAA
AATGCGTGTCCCATGGTTTCTTTTTTTGTTTCATGGGACAAAAAGTGAGG
GAAATACCCAAAAGACACGCTGATTTTCTCCCAGGGACAAAAGTGAGATT
TAACTTTTATTGGTAGAAAGAAAAATGGGGCGGAGACACGAGAAAGCGTT
TCAGGTTAGTGGGATGGAGCATGTTGCATTGCACTAACGCGAAAAAAACT
TCTCGTGTCCCCAAGCCTTAATAACTTTAAATTTATTTGATTTCCAATTT
TTCTTTTGTTTCAGTGGGTGAAGAACATTTCTCATGTCCAATATGTCTTG
ATACCGTTGAAGAAGCTGTTGAAACGACGTGTTGTCATCAAATTTTCTGT
GAAAAGTGCATACGTAAGCATCGAGAAATATCATGCCCCAAATGTCGAAA
ACAACCTTTCACCATTATTGTGAGTCACTTTGTTCGGAAACTGGTCGGTA
ATTTCTACATGGAATGTACGAATGACGGATGCTATCATATATTAACTCGA
TCAGATATGAAATATCATAAAGAGAAATGTGCTTTCGAGAAAATTCGATG
TCCAAATGATGGATGTAAAGCGAAAGTTATTCGTTCTTCTTTGGACGAAC
ATTTGAAGATGTGTAGTTATTCTTTAGTGAAATGTCGGAATAAGGGATGC
CTGTTGAGAGTGACGCGGCAAGATTTGGTTGAACATAACCGGCGTTGTGA
TTACATGGAAGTCACGTGTTCAAACGAAGGCTGTCACGTGACGATGATTC
GATTAAAGTTATCGAGACATTTACGAGAGTCGTGTCGCTACATGATTGCA
TCATGTCCCGTACCTGGTTGTAGGTATAAATCCACTGGGAGCACGTTAGG
CGAACACTTAAGTTCGGAGCATTATGAAATGTTTATGAGACATTTGGATG
AGCTGAAAGCTTTGTACGCTAAAGATCAGGACGCTATTTTCACTGTTAAA
TGGAGCTCAACTTTGAGTGGAGATAAATATTAAGAATAAAACGGTTGATT
GGTTTGGTGAGTATCATAAGGCCAACCCCTGTACCACAGACCCGTTTGAA
TCGCCGCCCCAACCCGAAAATTTGACCAATGCTTTGTTAGCTTTGAGTTT
TCAAATAGCTTGTCTATCTTGAGTTTTGGCAGGGAAGTTGGCGGTTAGTA
TTTACATTCTTAAGTTCCATAGGACAATAATTTATCAACGCTTTCGACCG
TCATGGATTTTGTGGGTCTTAAGTTTGTTTAAGATCTTTCTAATGGGCTT
TCTTATTATTAAAAGCGCAATTCCAAAAAAATAGTAAGAATGTATCTATA
CTCTTGTCTCGGGGGG

Coding sequence (CDS) from alignment at sc0000092_pilon:885036..892301-

>MSTRG.12313.3.p2 ID=MSTRG.12313.3.p2|Name=MSTRG.12313.3.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=732bp|location=Sequence derived from alignment at sc0000092_pilon:885036..892301- (Clytia hemisphaerica_ch_hm2_pilon)
GATGATATTGGAGATTGTGACGGTTCGCTTGGAGATAAAATTTACTTTGT
CGCGCGGTCGAACCACGGCAAATTCATAAATGACTCGAATGTGTTATGAA
CTAATCGCATTCCGTGCCATGAAAAAAATTCTAATAAACTTTGGTGAAAT
CGTGTCCCCACAACTGAAAATCCGAGCAGAGCTGACCTCTAACAAACCCT
GGAGTAAGCTATTTTTGCCATCTTTGATCGGTACCCTCAAACCTCAAACA
AGCCGTTGCAGTTTTCAGATTTTGCCAAATGCTCAACGGTGCTACAGCAC
AAGAAGTATTGAAGGAGAAGTAGATCCAGCACTCTCGATGCATTACACTG
CTATTACAGTAGTACAGATGATATTGGAGATTGTGACGGTTCGCTTGGAG
ATAAAATTTACTTTGTCGCGCGGTCGAACCACGGCAAATTCATAAATGAC
TCGAATGTGTTATGAACTAATCGCATTCCGTGCCATGAAAAAAATTCTAA
TAAACTTTGGTGAAATCGTGTCCCCACAACTGAAAATCCGAGCAGAGCTG
ACCTCTAACAAACCCTGGAGTAAGCTATTTTTGCCATCTTTGATCGGTAC
CCTCAAACCTCAAACAAGCCGTTGCAGTTTTCAGATTTTGCCAAATGCTC
AACGGTGCTACAGCACAAGAAGTATTGAAGGAGAAGTAGATCCAGCACTC
TCGATGCATTACACTGCTATTACAGTAGTACA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12313MSTRG.12313Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12313.3.p2MSTRG.12313.3.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12313.3.p2.exon6MSTRG.12313.3.p2.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12313.3.p2.exon5MSTRG.12313.3.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12313.3.p2.exon4MSTRG.12313.3.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12313.3.p2.exon3MSTRG.12313.3.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12313.3.p2.exon2MSTRG.12313.3.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12313.3.p2.exon1MSTRG.12313.3.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000092_pilongenomesc0000092_pilon:885036..892301 -