MSTRG.12310.4.p1 (mRNA) -

Overview
NameMSTRG.12310.4.p1
Unique NameMSTRG.12310.4.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000092_pilon:831020..834428-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12310.4.p1 ID=MSTRG.12310.4.p1|Name=MSTRG.12310.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3409bp|location=Sequence derived from alignment at sc0000092_pilon:831020..834428- (Clytia hemisphaerica_ch_hm2_pilon)
GAGAAGGCAAGCTTTTGATTTTGAAGGCGATGCGTCATTGGGAGAGCGAG
ACATGTATCAAATTTGTCAAGAAGACCAAACAAGTTGATTTTCTACACAT
TTATCCTGGCAATGGGTAAGAAATTCAATGAACATAAAAAAATTTTTCGG
ATGTTCTTAACATTTTGAGTTTTCAAGCCTTAAAATGTTCTTAAAATTTT
CCTATTTTCACCATTTTGTAAGTATTCTTATGCAATTTCCTGAGAAATCT
TGTGTTATCGAGTCCGCAAAGCCTTAAAATGTTCTTAACTTGTTCTTAAT
ATTTTGCCATTAATGTTTACACAAATTTCCGATTCTTTCAAAACTTGGTC
ACGCTTTTCTTGAAACTAGTCTGAATCGCAGACAAAACTGTGTTATAAAA
AGCTTTAAGGGCTCTGACCATAGTGAATTTTTCATAATTGCCATGTTTAA
AATATGTTTTCTGACTGATGTAACCAACAAAACTATGGCATGTTATACAT
TTTCTGTTAGACAAACTATTCCTGAATCTGAAAATTCAAAAATTGCATAG
AAAAAATTTGATGAAGAAGAAAATGAAGACTTTTGCGAGGAAGAGTATTT
CAACTTTGTAGAGCTTAGTTTCGGCGAAGAAAAAACATTTTGATAAAATT
TTCGCAGTAGATGGTGTATCTTTTACCGAACAATAAAAATTTTTGCGGAA
AATTTTTGTAAATGCTTCTTTGTCTCGAAATCTTCAAAATAGTGGTTTTT
TATCAATTTTTCACGTGGATTTTGCTTAAAAAAACAGTCATAACTTTTGA
CACATCTTTTTAGAAAAATTTTCCGCAAAATTTAAAATAGTTCAATTCTT
TGCGGACAGTGTAAAGAAATTTTGAAACAAAAAAGTTAATTACCCATTAA
AACTAAGCACTTTTTGTAAAAGAGGGTGATGCAACATATTATCAACATCT
TTTTAAAGTTCATAACGTCATTTTTGCGATTAAATTCTTAATTACTCTTA
AGGGATTCGATTAAAAAGCAATTTATAAAGGCAATTCTTTGTTAAAAGTG
TTAAGGAACCTGAAATATAACTTTTATGTTCAAATACCAAAATCAATTTT
TGGACTATGGTCAGAGCCCTTAAGTAGCATGAGGGTGCCAGCGGCTTAAT
TTTCAACAATCAAATAGTTATTTTCTGCTTCTTTCTTTTCCTCAGATGTT
GCAGTTACGTTGGTCGTCGTGGTGGTCGCCAATATTTATCGCTCGGCCGC
GGCTGTCTACGATTTGGTATCGTTACGCACGAGTTAGGACACGCTGTCGG
TTTTTGGCACGAACAGAATCGACCTGATCGCTCGATTTATATCGATGTTT
TATACGATAATGTCGATTCATCGAAATTCTTAAATTTCGATCCGAGAGGA
ATGAATGAAGTCAATACTTTTGATCAGGTAACTTTTTTTCTCTATTTTAC
CTGACCTATCAGATCACTTCAATCAAAGATCTAAACCAATCACTCTATTC
CATTCAGTTTTAAACATCAGCCAATCAAACCTCTCAAAGCCATGTTCTCG
ACCAACCAAATTAGTTTATTTTGAATTTATTGTTTTAACATTGACCAATC
AAATCACTTTATTCACAGATTTACGATTACGAATCGATAATGCATTACGG
CACGAGATTTTTCTCGAAGAATGATGGTAAAACAATTCGCGCAAAGGAGG
TTGGGAAAAACGTTAATGAAAACACGATCGGGAAATCTTATTACAAATTT
GACGGACCGGTTTTAAGCACACAAGATATTTTGGAAACAAATCTTCTATA
TAAATGCACCAAAATCACAGGTATGATTTATTGACGTTCCTTAGAATGAA
TAAATTCTAGCATAGACACATGAACATTGTGAGTTCTGACTGTTCATATG
TCTATGATTTTAGCATACACTTCATTCCCCCCTCTATGGTACACAATACA
AAATCTGAAATTATCTCGCACATCTCAGACGTGCACAAAGGTGCAATTTA
GAAAAGCCTATCCGAAACATAGACCACTAAATCACCGCTAAAACCCTTAA
CCCCGCTGGATAAGTCACTGGTACTAACATAAATTGTTATCTACAACTTA
AATTAACGGATAAAACTTTTCACTTTCATCTTAGATTGTGGTGGAACTCT
TTTCGCCGTCAAAGGCTCATTCACGTCAACCAATTTCCCGTCACGTTACC
CGATGGACGTCAAACGTGATTGCATATGGATTATCTCAACGACACAAACC
AAAGAACGGAACGGCAAGAAGACGTCATTGACGTTAATTTTCGATCAGTT
TCACGTCGGCAACGAGAAAAATCGTAAAACGGGCCAATGTGAGGATGATT
ACGTAGAAATACGTGAAGGCAAAGGCTTCTTATCGCCGTATATTGTACGT
TATTGCGGCAATACGTTACCGTCACCCGTCACAACGACGAGCGGCAGTTT
ATACGTCAGACTCCACACTTCGGGAAAAAATAATAATAAGAAATCATTGA
CACAACAAATGTTCACTGGATTTCAAGCTGACTTTAAAACTGACAGTGAG
TGATCGATTTTAATTTTTTCATCCTTGGTATACAGGGCGTGATTTTTTAT
ACGGAAACAACCAAAAACACTTCGAAACAAAATGGTCTTCAAGGTACCAA
GAATTCCCTTCGAATAATAGAAAGAATTACGGAGAGAGAGTGTTTTTATA
TGACATCCAGCGGAGCAGGCCAATGCTTTAGTTCGAATTACAGAGAGATT
CGAATAATAGAGGTTCGAGTTAGAGAGAGTTGACTGTATAAAACTTGTGG
CTAGTGCCCGGTGCTTTTCTGATGTCCTGTACATAATTCAGTGACGATTC
AGTGTTCTTAAACATGTTCTTATTTTCGCCATTTTGTGAGTTTTTCTAAG
AAATTGGGTGTTTTAAAGTCCACACCCTTAAAAGCCTTAAAACGTTCTTA
ACATTCTAAACATTTTGGCTATCGAAGCCTTATGTTCTTATATAGTTTGT
TCTTATAAAAAAAACGTGTGCAAATCCAACTTTTTCTTCTCTTTCAGTTT
GTTCACATCACATTAAACAATTTCCAACACGCATTCAGTCTCCTGATTTT
CCATTCGCTTACAAAAAAGGACAAGATTGTTTATGGGTTATCGAGTCTGA
CAAAGGAATGCAAATTGAACTCGATTTCCCATTCTTCTCACTCAGAGAAT
TGGACAAAGAACGTGGTTGCCTTGATTATATTGAAATTCATGAGGGCGAT
GGTAACAGTGAGAAATTTATCGGACGTTTCTGTGGTACAAATAGCCCGAA
GAAAATTATTTCCTCGTTAAACCAAATCAAGATACATTTTCATGCCAGCA
AAAAGAAAAGATTGGGATGGTATTTAGGATTCCAGGCTAACATCAAACAA
AAAGGTATT

Coding sequence (CDS) from alignment at sc0000092_pilon:831020..834428-

>MSTRG.12310.4.p1 ID=MSTRG.12310.4.p1|Name=MSTRG.12310.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5415bp|location=Sequence derived from alignment at sc0000092_pilon:831020..834428- (Clytia hemisphaerica_ch_hm2_pilon)
AGAATTGGACAAAGAACGTGGTTGCCTTGATTATATTGAAATTCATGAGG
GCGATGGTAACAGTGAGAAATTTATCGGACGTTTCTGTGGTACAAATAGC
CCGAAGAAAATTATTTCCTCGTTAAATTGTGGTGGAACTCTTTTCGCCGT
CAAAGGCTCATTCACGTCAACCAATTTCCCGTCACGTTACCCGATGGACG
TCAAACGTGATTGCATATGGATTATCTCAACGACACAAACCAAAGAACGG
AACGGCAAGAAGACGTCATTGACGTTAATTTTCGATCAGTTTCACGTCGG
CAACGAGAAAAATCGTAAAACGGGCCAATGTGAGGATGATTACGTAGAAA
TACGTGAAGGCAAAGGCTTCTTATCGCCGTATATTGTACGTTATTGCGGC
AATACGTTACCGTCACCCGTCACAACGACGAGCGGCAGTTTATACGTCAG
ACTCCACACTTCGGGAAAAAATAATAATAAGAAATCATTGACACAACAAA
TGTTCACTGGATTTCAAGCTGACTTTAAAACTGACAATTTACGATTACGA
ATCGATAATGCATTACGGCACGAGATTTTTCTCGAAGAATGATGGTAAAA
CAATTCGCGCAAAGGAGGTTGGGAAAAACGTTAATGAAAACACGATCGGG
AAATCTTATTACAAATTTGACGGACCGGTTTTAAGCACACAAGATATTTT
GGAAACAAATCTTCTATATAAATGCACCAAAATCACAGATGTTGCAGTTA
CGTTGGTCGTCGTGGTGGTCGCCAATATTTATCGCTCGGCCGCGGCTGTC
TACGATTTGGTATCGTTACGCACGAGTTAGGACACGCTGTCGGTTTTTGG
CACGAACAGAATCGACCTGATCGCTCGATTTATATCGATGTTTTATACGA
TAATGTCGATTCATCGAAATTCTTAAATTTCGATCCGAGAGGAATGAATG
AAGTCAATACTTTTGATCAGGAAGGCAAGCTTTTGATTTTGAAGGCGATG
CGTCATTGGGAGAGCGAGACATGTATCAAATTTGTCAAGAAGACCAAACA
AGTTGATTTTCTACACATTTATCCTGGCAATGGAGAATTGGACAAAGAAC
GTGGTTGCCTTGATTATATTGAAATTCATGAGGGCGATGGTAACAGTGAG
AAATTTATCGGACGTTTCTGTGGTACAAATAGCCCGAAGAAAATTATTTC
CTCGTTAAATTGTGGTGGAACTCTTTTCGCCGTCAAAGGCTCATTCACGT
CAACCAATTTCCCGTCACGTTACCCGATGGACGTCAAACGTGATTGCATA
TGGATTATCTCAACGACACAAACCAAAGAACGGAACGGCAAGAAGACGTC
ATTGACGTTAATTTTCGATCAGTTTCACGTCGGCAACGAGAAAAATCGTA
AAACGGGCCAATGTGAGGATGATTACGTAGAAATACGTGAAGGCAAAGGC
TTCTTATCGCCGTATATTGTACGTTATTGCGGCAATACGTTACCGTCACC
CGTCACAACGACGAGCGGCAGTTTATACGTCAGACTCCACACTTCGGGAA
AAAATAATAATAAGAAATCATTGACACAACAAATGTTCACTGGATTTCAA
GCTGACTTTAAAACTGACAATTTACGATTACGAATCGATAATGCATTACG
GCACGAGATTTTTCTCGAAGAATGATGGTAAAACAATTCGCGCAAAGGAG
GTTGGGAAAAACGTTAATGAAAACACGATCGGGAAATCTTATTACAAATT
TGACGGACCGGTTTTAAGCACACAAGATATTTTGGAAACAAATCTTCTAT
ATAAATGCACCAAAATCACAGATGTTGCAGTTACGTTGGTCGTCGTGGTG
GTCGCCAATATTTATCGCTCGGCCGCGGCTGTCTACGATTTGGTATCGTT
ACGCACGAGTTAGGACACGCTGTCGGTTTTTGGCACGAACAGAATCGACC
TGATCGCTCGATTTATATCGATGTTTTATACGATAATGTCGATTCATCGA
AATTCTTAAATTTCGATCCGAGAGGAATGAATGAAGTCAATACTTTTGAT
CAGGAAGGCAAGCTTTTGATTTTGAAGGCGATGCGTCATTGGGAGAGCGA
GACATGTATCAAATTTGTCAAGAAGACCAAACAAGTTGATTTTCTACACA
TTTATCCTGGCAATGGAGAATTGGACAAAGAACGTGGTTGCCTTGATTAT
ATTGAAATTCATGAGGGCGATGGTAACAGTGAGAAATTTATCGGACGTTT
CTGTGGTACAAATAGCCCGAAGAAAATTATTTCCTCGTTAAATTGTGGTG
GAACTCTTTTCGCCGTCAAAGGCTCATTCACGTCAACCAATTTCCCGTCA
CGTTACCCGATGGACGTCAAACGTGATTGCATATGGATTATCTCAACGAC
ACAAACCAAAGAACGGAACGGCAAGAAGACGTCATTGACGTTAATTTTCG
ATCAGTTTCACGTCGGCAACGAGAAAAATCGTAAAACGGGCCAATGTGAG
GATGATTACGTAGAAATACGTGAAGGCAAAGGCTTCTTATCGCCGTATAT
TGTACGTTATTGCGGCAATACGTTACCGTCACCCGTCACAACGACGAGCG
GCAGTTTATACGTCAGACTCCACACTTCGGGAAAAAATAATAATAAGAAA
TCATTGACACAACAAATGTTCACTGGATTTCAAGCTGACTTTAAAACTGA
CAATTTACGATTACGAATCGATAATGCATTACGGCACGAGATTTTTCTCG
AAGAATGATGGTAAAACAATTCGCGCAAAGGAGGTTGGGAAAAACGTTAA
TGAAAACACGATCGGGAAATCTTATTACAAATTTGACGGACCGGTTTTAA
GCACACAAGATATTTTGGAAACAAATCTTCTATATAAATGCACCAAAATC
ACAGATGTTGCAGTTACGTTGGTCGTCGTGGTGGTCGCCAATATTTATCG
CTCGGCCGCGGCTGTCTACGATTTGGTATCGTTACGCACGAGTTAGGACA
CGCTGTCGGTTTTTGGCACGAACAGAATCGACCTGATCGCTCGATTTATA
TCGATGTTTTATACGATAATGTCGATTCATCGAAATTCTTAAATTTCGAT
CCGAGAGGAATGAATGAAGTCAATACTTTTGATCAGGAAGGCAAGCTTTT
GATTTTGAAGGCGATGCGTCATTGGGAGAGCGAGACATGTATCAAATTTG
TCAAGAAGACCAAACAAGTTGATTTTCTACACATTTATCCTGGCAATGGA
GAATTGGACAAAGAACGTGGTTGCCTTGATTATATTGAAATTCATGAGGG
CGATGGTAACAGTGAGAAATTTATCGGACGTTTCTGTGGTACAAATAGCC
CGAAGAAAATTATTTCCTCGTTAAATTGTGGTGGAACTCTTTTCGCCGTC
AAAGGCTCATTCACGTCAACCAATTTCCCGTCACGTTACCCGATGGACGT
CAAACGTGATTGCATATGGATTATCTCAACGACACAAACCAAAGAACGGA
ACGGCAAGAAGACGTCATTGACGTTAATTTTCGATCAGTTTCACGTCGGC
AACGAGAAAAATCGTAAAACGGGCCAATGTGAGGATGATTACGTAGAAAT
ACGTGAAGGCAAAGGCTTCTTATCGCCGTATATTGTACGTTATTGCGGCA
ATACGTTACCGTCACCCGTCACAACGACGAGCGGCAGTTTATACGTCAGA
CTCCACACTTCGGGAAAAAATAATAATAAGAAATCATTGACACAACAAAT
GTTCACTGGATTTCAAGCTGACTTTAAAACTGACAATTTACGATTACGAA
TCGATAATGCATTACGGCACGAGATTTTTCTCGAAGAATGATGGTAAAAC
AATTCGCGCAAAGGAGGTTGGGAAAAACGTTAATGAAAACACGATCGGGA
AATCTTATTACAAATTTGACGGACCGGTTTTAAGCACACAAGATATTTTG
GAAACAAATCTTCTATATAAATGCACCAAAATCACAGATGTTGCAGTTAC
GTTGGTCGTCGTGGTGGTCGCCAATATTTATCGCTCGGCCGCGGCTGTCT
ACGATTTGGTATCGTTACGCACGAGTTAGGACACGCTGTCGGTTTTTGGC
ACGAACAGAATCGACCTGATCGCTCGATTTATATCGATGTTTTATACGAT
AATGTCGATTCATCGAAATTCTTAAATTTCGATCCGAGAGGAATGAATGA
AGTCAATACTTTTGATCAGGAAGGCAAGCTTTTGATTTTGAAGGCGATGC
GTCATTGGGAGAGCGAGACATGTATCAAATTTGTCAAGAAGACCAAACAA
GTTGATTTTCTACACATTTATCCTGGCAATGGAGAATTGGACAAAGAACG
TGGTTGCCTTGATTATATTGAAATTCATGAGGGCGATGGTAACAGTGAGA
AATTTATCGGACGTTTCTGTGGTACAAATAGCCCGAAGAAAATTATTTCC
TCGTTAAATTGTGGTGGAACTCTTTTCGCCGTCAAAGGCTCATTCACGTC
AACCAATTTCCCGTCACGTTACCCGATGGACGTCAAACGTGATTGCATAT
GGATTATCTCAACGACACAAACCAAAGAACGGAACGGCAAGAAGACGTCA
TTGACGTTAATTTTCGATCAGTTTCACGTCGGCAACGAGAAAAATCGTAA
AACGGGCCAATGTGAGGATGATTACGTAGAAATACGTGAAGGCAAAGGCT
TCTTATCGCCGTATATTGTACGTTATTGCGGCAATACGTTACCGTCACCC
GTCACAACGACGAGCGGCAGTTTATACGTCAGACTCCACACTTCGGGAAA
AAATAATAATAAGAAATCATTGACACAACAAATGTTCACTGGATTTCAAG
CTGACTTTAAAACTGACAATTTACGATTACGAATCGATAATGCATTACGG
CACGAGATTTTTCTCGAAGAATGATGGTAAAACAATTCGCGCAAAGGAGG
TTGGGAAAAACGTTAATGAAAACACGATCGGGAAATCTTATTACAAATTT
GACGGACCGGTTTTAAGCACACAAGATATTTTGGAAACAAATCTTCTATA
TAAATGCACCAAAATCACAGATGTTGCAGTTACGTTGGTCGTCGTGGTGG
TCGCCAATATTTATCGCTCGGCCGCGGCTGTCTACGATTTGGTATCGTTA
CGCACGAGTTAGGACACGCTGTCGGTTTTTGGCACGAACAGAATCGACCT
GATCGCTCGATTTATATCGATGTTTTATACGATAATGTCGATTCATCGAA
ATTCTTAAATTTCGATCCGAGAGGAATGAATGAAGTCAATACTTTTGATC
AGGAAGGCAAGCTTTTGATTTTGAAGGCGATGCGTCATTGGGAGAGCGAG
ACATGTATCAAATTTGTCAAGAAGACCAAACAAGTTGATTTTCTACACAT
TTATCCTGGCAATGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12310MSTRG.12310Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12310.4.p1MSTRG.12310.4.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12310.4.p1.exon5MSTRG.12310.4.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12310.4.p1.exon4MSTRG.12310.4.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12310.4.p1.exon3MSTRG.12310.4.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12310.4.p1.exon2MSTRG.12310.4.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12310.4.p1.exon1MSTRG.12310.4.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000092_pilongenomesc0000092_pilon:831020..834428 -