MSTRG.12309.3.p1 (mRNA) -

Overview
NameMSTRG.12309.3.p1
Unique NameMSTRG.12309.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000092_pilon:821459..824465+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12309.3.p1 ID=MSTRG.12309.3.p1|Name=MSTRG.12309.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3007bp|location=Sequence derived from alignment at sc0000092_pilon:821459..824465+ (Clytia hemisphaerica_ch_hm2_pilon)
TggtcaatattttctttgataatTTGACCTCTGGTACTCTCAGGAAACGG
TTTTGTATGCATCaaagaatgggctcttccagaaaaaaattggatgGGTG
GAGGATTACttcccggacattgtgacttttgacccccggacaacagATCT
AACCctccggacaagcatcagttaaCCCCCTCCCATTATATTCAtaatta
cccctaaacagagcagTTTTGCCCCCAAACAAgacaaattttgcagattt
ttcactatccCCCGGACATAATATCCAATATATCTTCCActccccccccc
atgtacaacaaaaattttctggaagagcacaATATACATTTATGGGACAT
TTATACAATAACACTAAACACAGGGAGTAGGCTCGAGTTTACTAGGATCA
AAAAACTATATTAAGCTTAAATATGTGATTGTGTAGGTGTAAATAAAAAG
GATATATGACGCCATTCGACCCTGGTAAACTCAGACCTAGTCCTTATTTT
TACAAGGTTTTCTTGATACATTTGATTATTGAAGATGCGGTTCACACGAC
AAGGCGATGTGGTGATTGGTCTGTCCATGGTTTTATTTTCACTCATCTGT
TCATCCATGTTCTTCATACAAGGTATTATGGGttttttttATTACAAGGT
ATAATGggtatttttcattacaaggtattatgggtatttttcattacaag
gtattatgggtattttttattacaaggtatAATGggtatttttcattaca
aggtattatgggtatttttcattacaaggtattatgggtattttttatta
caaggtataatgggtatttttcattacaaggtattatgggtattttttCA
TCACAAGGTATTATAGGTATTATTTCCActcaaaaatccagggggtcacc
tTTTCCAAAAAAGACCTCCCCAATATGACACCCCttcccttgtacgcaga
gaacaataggaATGGCATCATTCAAACAAACACTTCTCCCTTCATTGCGC
ACGTACTATTTATAATATTTACTATTTCAATGTCTtccacagacccaaca
gctgattggttgtaagtgacgtaaactCAGTTAATACGTCACATTTAACC
AattagctgttgggtccgttgaagcgttgaagacattgcaatgGtgAAGA
TTGAGCGTtgAagacattgcaatggtgaatatcaagaatagaaGACTCCT
TAAATAGGAACAACCCTTATATATTGTTCTTACTACAGTACCAAATTGCT
CCAACGAAGACGACCAATTTATGAATGAAGTCGTTGCTTATGATCGGATA
GGTAATGAAATCCAACGTCGCGATGCTTTCATCACTGGTAAAACCATGCA
TCAAGAAAAAGGTACGGTTTAAGATATCTCaagctttaaaggttttgttt
ttaatacgTAAGAGTGatatatcgtttgcttaccTaaaaaaatatggagc
aagattggtcaaaaggggaaaagaaaataatctttttgtttgtatcagca
caatataacaatagtcAGAccctgtcctgatatgaaacatgtgtctgata
ggaaacgggaatacttatgtaaaaatataacctttaaatcattaaaataa
tttttggcaTACTTGAAGTGATAGTATGATAATGATAAAGTTTCCCACCT
CTCCGGTGTTTCATATTGAGCTGAAAGGAAAACACAATGTCCTATGCCCA
CTCTGGCTagaaaaatcctaccaggtctgtgagaaggggtcccAATACTT
GTACAATCAACCCTCTAGAAGCTAAAGAGGCTTGCTTGGTCAATCTCTCT
TATGAATTTTATTTCAgggattttccgatttttcatgCACCCTTTCTAAT
TCATTGTCccatttctcttttttcagtCCCGCTACTAATCGGAGTACCCA
CAGTTTATcggtcatacaaaaacaaaacgaGCTTCTACTTGGATCGTACA
ATCAAGTCCTTGATCCAACCTCTCTCAAAAGAAGATAAAAGACAAGTCAA
CATTCTTATAATTCTTGCTGATAGTGATAAAACGAAAAAGACATTCATGT
ACCAAAAGCTAAAAGACCAGTTCCCAAACGAAATCCGATCGGGTTTAATC
GGGATAATTGGAATCCCGAAACGGTTTTATCTTCCTCTTCACAATTTAGC
ACCAACATTTAATGAcacaaataaaagaatgtattGGCGCTCGAAACAGA
GTTTAGATTACGCCTTCATTTTTCAATACGCTCAAAATCTGTGCGACTAT
TATCTACAAATTGAAGACGATGTTTTGGCCAATGAACAATATTTTGACAC
AATCATGGAAGATATGAATCGTTTGAACAGCGCTCGAAATAAAGAACCAG
TTATCTTTAAGAATGAGAAAGAAACAAGGCCGAAATATAAACCATGGATA
GTGTCCGAATATTACAAGATGGGTTTTATCGGACGGTTGATTCCGGCTCA
CTATTTACCGCTTTTTGCCGGctttattaaagtattttataaTGAGCTAC
CGGTAGATTGGGGTTATACTCATATGCTTGGATTGATGGGTGAATACAAA
GCAGATCATAATCCATCACTTTTTAAGCATATTGGAAAACAGAGTTCGTC
CCTTGGGACATAATAATAAAGACAAATCACGTCATTTTAGTGTATttaaa
cgtttttcagaatttaaagttcgggtgagagttgctattttagcacttcc
actttctttcattgaatatttcgattttggagagGTTCGGTGGCTTATAG
TCTacattccaagccttattggagcaaaaatttgagcttttaaatcctga
gatcctaaggtcgtaggTCTTACTTATGTTAAAACTCTATTTTCCAACTG
TAGTTAAAAAGGTGGTTAAAAATCCTTTGTCATGATTGTAGCAAAGACGC
ttttttttGTTATTGCTCTTTAAAATCTCATACTGTTGtctattgaaaat
ataaaatctacAGTAGGTCAAAACTTTACgatcaaaacattttcatacCT
TAGAAGG

Coding sequence (CDS) from alignment at sc0000092_pilon:821459..824465+

>MSTRG.12309.3.p1 ID=MSTRG.12309.3.p1|Name=MSTRG.12309.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2844bp|location=Sequence derived from alignment at sc0000092_pilon:821459..824465+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCGGTTCACACGACAAGGCGATGTGGTGATTGGTCTGTCCATGGTTTT
ATTTTCACTCATCTGTTCATCCATGTTCTTCATACAAGTACCAAATTGCT
CCAACGAAGACGACCAATTTATGAATGAAGTCGTTGCTTATGATCGGATA
GGTAATGAAATCCAACGTCGCGATGCTTTCATCACTGGTAAAACCATGCA
TCAAGAAAAAGtCCCGCTACTAATCGGAGTACCCACAGTTTATcggtcat
acaaaaacaaaacgaGCTTCTACTTGGATCGTACAATCAAGTCCTTGATC
CAACCTCTCTCAAAAGAAGATAAAAGACAAGTCAACATTCTTATAATTCT
TGCTGATAGTGATAAAACGAAAAAGACATTCATGTACCAAAAGCTAAAAG
ACCAGTTCCCAAACGAAATCCGATCGGGTTTAATCGGGATAATTGGAATC
CCGAAACGGTTTTATCTTCCTCTTCACAATTTAGCACCAACATTTAATGA
cacaaataaaagaatgtattGGCGCTCGAAACAGAGTTTAGATTACGCCT
TCATTTTTCAATACGCTCAAAATCTGTGCGACTATTATCTACAAATTGAA
GACGATGTTTTGGCCAATGAACAATATTTTGACACAATCATGGAAGATAT
GAATCGTTTGAACAGCGCTCGAAATAAAGAACCAGTTATCTTTAAGAATG
AGAAAGAAACAAGGCCGAAATATAAACCATGGATAGTGTCCGAATATTAC
AAGATGGGTTTTATCGGACGGTTGATTCCGGCTCACTATTTACCGCTTTT
TGCCGGctttattaaagtattttataaTGAGCTACCGGTAGATTGGGGTT
ATACTCATATGCTTGGATTGATGGGTGAATACAAAGCAGATCATAATCCA
TCACTTTTTAAGCATATTGGAAAACAGAGTTCGTCCCTTGGGACATAAAT
GCGGTTCACACGACAAGGCGATGTGGTGATTGGTCTGTCCATGGTTTTAT
TTTCACTCATCTGTTCATCCATGTTCTTCATACAAGTACCAAATTGCTCC
AACGAAGACGACCAATTTATGAATGAAGTCGTTGCTTATGATCGGATAGG
TAATGAAATCCAACGTCGCGATGCTTTCATCACTGGTAAAACCATGCATC
AAGAAAAAGtCCCGCTACTAATCGGAGTACCCACAGTTTATcggtcatac
aaaaacaaaacgaGCTTCTACTTGGATCGTACAATCAAGTCCTTGATCCA
ACCTCTCTCAAAAGAAGATAAAAGACAAGTCAACATTCTTATAATTCTTG
CTGATAGTGATAAAACGAAAAAGACATTCATGTACCAAAAGCTAAAAGAC
CAGTTCCCAAACGAAATCCGATCGGGTTTAATCGGGATAATTGGAATCCC
GAAACGGTTTTATCTTCCTCTTCACAATTTAGCACCAACATTTAATGAca
caaataaaagaatgtattGGCGCTCGAAACAGAGTTTAGATTACGCCTTC
ATTTTTCAATACGCTCAAAATCTGTGCGACTATTATCTACAAATTGAAGA
CGATGTTTTGGCCAATGAACAATATTTTGACACAATCATGGAAGATATGA
ATCGTTTGAACAGCGCTCGAAATAAAGAACCAGTTATCTTTAAGAATGAG
AAAGAAACAAGGCCGAAATATAAACCATGGATAGTGTCCGAATATTACAA
GATGGGTTTTATCGGACGGTTGATTCCGGCTCACTATTTACCGCTTTTTG
CCGGctttattaaagtattttataaTGAGCTACCGGTAGATTGGGGTTAT
ACTCATATGCTTGGATTGATGGGTGAATACAAAGCAGATCATAATCCATC
ACTTTTTAAGCATATTGGAAAACAGAGTTCGTCCCTTGGGACATAAATGC
GGTTCACACGACAAGGCGATGTGGTGATTGGTCTGTCCATGGTTTTATTT
TCACTCATCTGTTCATCCATGTTCTTCATACAAGTACCAAATTGCTCCAA
CGAAGACGACCAATTTATGAATGAAGTCGTTGCTTATGATCGGATAGGTA
ATGAAATCCAACGTCGCGATGCTTTCATCACTGGTAAAACCATGCATCAA
GAAAAAGtCCCGCTACTAATCGGAGTACCCACAGTTTATcggtcatacaa
aaacaaaacgaGCTTCTACTTGGATCGTACAATCAAGTCCTTGATCCAAC
CTCTCTCAAAAGAAGATAAAAGACAAGTCAACATTCTTATAATTCTTGCT
GATAGTGATAAAACGAAAAAGACATTCATGTACCAAAAGCTAAAAGACCA
GTTCCCAAACGAAATCCGATCGGGTTTAATCGGGATAATTGGAATCCCGA
AACGGTTTTATCTTCCTCTTCACAATTTAGCACCAACATTTAATGAcaca
aataaaagaatgtattGGCGCTCGAAACAGAGTTTAGATTACGCCTTCAT
TTTTCAATACGCTCAAAATCTGTGCGACTATTATCTACAAATTGAAGACG
ATGTTTTGGCCAATGAACAATATTTTGACACAATCATGGAAGATATGAAT
CGTTTGAACAGCGCTCGAAATAAAGAACCAGTTATCTTTAAGAATGAGAA
AGAAACAAGGCCGAAATATAAACCATGGATAGTGTCCGAATATTACAAGA
TGGGTTTTATCGGACGGTTGATTCCGGCTCACTATTTACCGCTTTTTGCC
GGctttattaaagtattttataaTGAGCTACCGGTAGATTGGGGTTATAC
TCATATGCTTGGATTGATGGGTGAATACAAAGCAGATCATAATCCATCAC
TTTTTAAGCATATTGGAAAACAGAGTTCGTCCCTTGGGACATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12309MSTRG.12309Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12309.3.p1MSTRG.12309.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12309.3.p1.exon1MSTRG.12309.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12309.3.p1.exon2MSTRG.12309.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12309.3.p1.exon3MSTRG.12309.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12309.3.p1.exon4MSTRG.12309.3.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000092_pilongenomesc0000092_pilon:821459..824465 +