MSTRG.12309.1.p1 (mRNA) -

Overview
NameMSTRG.12309.1.p1
Unique NameMSTRG.12309.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000092_pilon:821176..827038+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12309.1.p1 ID=MSTRG.12309.1.p1|Name=MSTRG.12309.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5863bp|location=Sequence derived from alignment at sc0000092_pilon:821176..827038+ (Clytia hemisphaerica_ch_hm2_pilon)
GCAGGTAGGACATCTGTAAAACAGTGCCTACAGTGCGTAGACGAAGTagg
aaaaagatttgaaaatcatGGATTTAGAGTTCGGGTGAGAGTTGCTATTG
CacttcaaaaatgaaagaataaatttgacGTTTCAGAGGAATTTGaatat
tccaaaaatttgaagcgTTGATTTTTAACAtcattcgatttttttaaagt
tggaTTATTGTTGAGTATTATAATTATATCGTGCAATACTTTCTTCTGAT
TGGCTGGAACGGAAAACCTTATCCCTTCACCAGTggtcaatattttcttt
gataatTTGACCTCTGGTACTCTCAGGAAACGGTTTTGTATGCATCaaag
aatgggctcttccagaaaaaaattggatgGGTGGAGGATTACttcccgga
cattgtgacttttgacccccggacaacagATCTAACCctccggacaagca
tcagttaaCCCCCTCCCATTATATTCAtaattacccctaaacagagcagT
TTTGCCCCCAAACAAgacaaattttgcagatttttcactatccCCCGGAC
ATAATATCCAATATATCTTCCActcccccccccatgtacaacaaaaattt
tctggaagagcacaATATACATTTATGGGACATTTATACAATAACACTAA
ACACAGGGAGTAGGCTCGAGTTTACTAGGATCAAAAAACTATATTAAGCT
TAAATATGTGATTGTGTAGGTGTAAATAAAAAGGATATATGACGCCATTC
GACCCTGGTAAACTCAGACCTAGTCCTTATTTTTACAAGGTTTTCTTGAT
ACATTTGATTATTGAAGATGCGGTTCACACGACAAGGCGATGTGGTGATT
GGTCTGTCCATGGTTTTATTTTCACTCATCTGTTCATCCATGTTCTTCAT
ACAAGGTATTATGGGttttttttATTACAAGGTATAATGggtatttttca
ttacaaggtattatgggtatttttcattacaaggtattatgggtattttt
tattacaaggtatAATGggtatttttcattacaaggtattatgggtattt
ttcattacaaggtattatgggtattttttattacaaggtataatgggtat
ttttcattacaaggtattatgggtattttttCATCACAAGGTATTATAGG
TATTATTTCCActcaaaaatccagggggtcacctTTTCCAAAAAAGACCT
CCCCAATATGACACCCCttcccttgtacgcagagaacaataggaATGGCA
TCATTCAAACAAACACTTCTCCCTTCATTGCGCACGTACTATTTATAATA
TTTACTATTTCAATGTCTtccacagacccaacagctgattggttgtaagt
gacgtaaactCAGTTAATACGTCACATTTAACCAattagctgttgggtcc
gttgaagcgttgaagacattgcaatgGtgAAGATTGAGCGTtgAagacat
tgcaatggtgaatatcaagaatagaaGACTCCTTAAATAGGAACAACCCT
TATATATTGTTCTTACTACAGTACCAAATTGCTCCAACGAAGACGACCAA
TTTATGAATGAAGTCGTTGCTTATGATCGGATAGGTAATGAAATCCAACG
TCGCGATGCTTTCATCACTGGTAAAACCATGCATCAAGAAAAAGGTACGG
TTTAAGATATCTCaagctttaaaggttttgtttttaatacgTAAGAGTGa
tatatcgtttgcttaccTaaaaaaatatggagcaagattggtcaaaaggg
gaaaagaaaataatctttttgtttgtatcagcacaatataacaatagtcA
GAccctgtcctgatatgaaacatgtgtctgataggaaacgggaatactta
tgtaaaaatataacctttaaatcattaaaataatttttggcaTACTTGAA
GTGATAGTATGATAATGATAAAGTTTCCCACCTCTCCGGTGTTTCATATT
GAGCTGAAAGGAAAACACAATGTCCTATGCCCACTCTGGCTagaaaaatc
ctaccaggtctgtgagaaggggtcccAATACTTGTACAATCAACCCTCTA
GAAGCTAAAGAGGCTTGCTTGGTCAATCTCTCTTATGAATTTTATTTCAg
ggattttccgatttttcatgCACCCTTTCTAATTCATTGTCccatttctc
ttttttcagtCCCGCTACTAATCGGAGTACCCACAGTTTATcggtcatac
aaaaacaaaacgaGCTTCTACTTGGATCGTACAATCAAGTCCTTGATCCA
ACCTCTCTCAAAAGAAGATAAAAGACAAGTCAACATTCTTATAATTCTTG
CTGATAGTGATAAAACGAAAAAGACATTCATGTACCAAAAGCTAAAAGAC
CAGTTCCCAAACGAAATCCGATCGGGTTTAATCGGGATAATTGGAATCCC
GAAACGGTTTTATCTTCCTCTTCACAATTTAGCACCAACATTTAATGAca
caaataaaagaatgtattGGCGCTCGAAACAGAGTTTAGATTACGCCTTC
ATTTTTCAATACGCTCAAAATCTGTGCGACTATTATCTACAAATTGAAGA
CGATGTTTTGGCCAATGAACAATATTTTGACACAATCATGGAAGATATGA
ATCGTTTGAACAGCGCTCGAAATAAAGAACCAGTTATCTTTAAGAATGAG
AAAGAAACAAGGCCGAAATATAAACCATGGATAGTGTCCGAATATTACAA
GATGGGTTTTATCGGACGGTTGATTCCGGCTCACTATTTACCGCTTTTTG
CCGGctttattaaagtattttataaTGAGCTACCGGTAGATTGGGGTTAT
ACTCATATGCTTGGATTGATGGGTGAATACAAAGCAGATCATAATCCATC
ACTTTTTAAGCATATTGGAAAACAGAGTTCGTCCCTTGGGACATAATAAT
AAAGACAAATCACGTCATTTTAGTGTATttaaacgtttttcagaatttaa
agttcgggtgagagttgctattttagcacttccactttctttcattgaat
atttcgattttggagagGTTCGGTGGCTTATAGTCTacattccaagcctt
attggagcaaaaatttgagcttttaaatcctgagatcctaaggtcgtagg
TCTTACTTATGTTAAAACTCTATTTTCCAACTGTAGTTAAAAAGGTGGTT
AAAAATCCTTTGTCATGATTGTAGCAAAGACGCttttttttGTTATTGCT
CTTTAAAATCTCATACTGTTGtctattgaaaatataaaatctacAGTAGG
TCAAAACTTTACgatcaaaacattttcatacCTTAGAAGGGAAAACTAAT
AGTAACAGCTCGTTGGAAAgagaattttgaatgaaaaaaagtttcacgGC
TCTAAAATCTTTAAGATGAGAAAAAATGATAGAATATTTCCATAAGGCAG
AGATATTAACGACTTATACTTAAGAAACTGAGCTAAATATATTTCTGAGG
ACTATGGTGAAATTTACAGTTTTAGAAGAATATGTATTTAAAGTTATAAG
ATTTGTTCCTGAAGAAAAATCTCTTTAGAATATATTTAAATCAACTTTCT
TAAACGCCCATCCACTCAAAATTATCTATCCAACAAGATCCAATCTTGCG
AACTCTTCTTGGTATAGAGCTTGTTTACTTATTAGGCAAACCTTCGATAC
GCAGGCGTTCGAAgaaattaaatataaaaaatttagGGATTGAATTTTCT
GAATAAACTTCTTGTTAATAAAAATGTGGATATATACTATATACTTCTAT
TTAACATCTCAATACATtatcttaaaaacaaaacaataatgCTTGCTCTA
AAATCAAATCACGGATAGGGTTTATGCCACCCGTATAAATGCGACATTTA
GTTTCTGATGGTTTAACAGTCCTTTGGAATTCATACGAACAAGTCTACTT
TTTGCCAGGATTTACTCTACTTAAGGGAACCTAATCAAAATGGAAATAAT
TTTGTTCGCAAataattttagcgaaaattctttctttttctcagGTTTCT
ATGTAAGTTGTACCCCgcagaatacaccttttcgaccgtagccaccaatt
accacgcgggcattttttgtccgtttcaccaccctaaaaccgtcccagtt
tCTTTTGTCTATAGGTCTTTTGTCTAATGGGACGGTTTTAGGATGGTAAA
ACGGACAGAATAAtgtccgcgcggcaattggcggctacggtcgaaaaggt
gtattaatgTTTGAAGTAGACATccaaattagttcccttaaagaTGCGGT
TTCACAAAGCCAATATCTCCGAGCAGAGCTTGATTGTTATGCACAGGCCA
TGGAAATGACACCGTGGAGTAACCAGGACCTGCTCGGAGACTACAATAAA
GCGTGTTACACAGTGTCTGTGGTTTAAACGGTGTTGATAAAACAATAACT
ATTTACAATCTCTCTTTAATATGTTGAGCAGgggtaaaataaataaattc
ttgcGAGTATAATATATGTACGAACGGaaaaaaaTActatttatttatga
tatttatgacgtaatgttatataCGGTATCACCCAAAAAATAGCCTGGAC
GTTTGCCAATAGTTTTATCCTTAATATgtgtaagtcaagattacgtcatt
ttccaTAACAGAAACACCCGAAACACCGGAGTTTGACCCCTgagtgttac
taaaaatagcaaCACAGGGGTTAGATTTCGtttttttCGGGTGCTTCCGA
TATGAAAAATGACATAATCTTGACTTACACATATCAAGAATTCCCAACTA
GTGGTTAACATCCGGTCTAATccgggtgtttccgtataaaacataAATCA
TAAATCCATGAAATGTGTAAGTCAAAActgtttcttttttcagatcagaa
aagtccaaaaacgaggATTTTCCTCTAGAGTCGATATAGAAAATGGACAA
AGTCAAGTCGAAAGAGGATCTAGCCAAAGCATCGAACTATTGAACAAAAA
TACCCAGTGTTTTCTGATGTTTCCGATGAAAAATGGTTTGACTTAATGAT
TTCATAAATCActataaaaattatcaaaactatAGATTTATgaaatatct
tttatttttttaaacttttagatTGATTAATTTATTCAGCAGGAAGTGTT
GGTAAGAGATTTCATCACCAAATCTACACAGTATATGGTAAATTATGCAT
CTTGAATCAACCAACCAAGGAAGAATCCCAGCTGGCAAACGTCACCTTAA
CGTTCActtaacgttcatttaacgttatatgagCTTTAGGGACGTCAAAT
GTTCTGTGCCAGTTGGGATTACAAGTTTCATAGCAACGAAAACTCCAAAG
CACCAAAATTAGGAAAAGGTATATAGCGAGTGTTAAAAgtcattttcgat
tttcaaataTGTATAAAGaacatctttttcttttttttctttctatatGA
AGATTTTGCAGCCAAAACTTCATCCACCACCAGCAGTATCAtccaatttc
tttaaaaatggcTTTAAAACCTTTCCCACTCATAGTTTCATCTGAGtgaa
atttcactttaaaataAGACCGCCCTCCATCAATAATCATTTTGGGCGGA
TTCTTATTTCCACAAAAGCGCCCGATTAGTTTCACGGCTGGcatattata
aaaatgttcttcaacGATGACGTAATCATACTGACACTCTTTATGTGCTT
CGAGTCCGAAATGAACAAAACGTAGCTTCATACGTTGACGCTTAGGTGAA
TGTAACGTCCATACGCAGCTCTGTGAATCCGGATAACGGAACGGATAACC
GGGCGTACGGAAACGGCCGTGCGTTATGTTAAATGTACGACCACAATGCT
GCTCTTTTGACGAGacgctatggtaattgatttcAATGGCTTTCGGGAAA
GGGTACTGGAAAA

Coding sequence (CDS) from alignment at sc0000092_pilon:821176..827038+

>MSTRG.12309.1.p1 ID=MSTRG.12309.1.p1|Name=MSTRG.12309.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4128bp|location=Sequence derived from alignment at sc0000092_pilon:821176..827038+ (Clytia hemisphaerica_ch_hm2_pilon)
GCAGGTAGGACATCTGTAAAACAGTGCCTACAGTGCGTAGACGAAGTagg
aaaaagatttgaaaatcatGGATTTAGAGTTCGGATGCGGTTCACACGAC
AAGGCGATGTGGTGATTGGTCTGTCCATGGTTTTATTTTCACTCATCTGT
TCATCCATGTTCTTCATACAAGTACCAAATTGCTCCAACGAAGACGACCA
ATTTATGAATGAAGTCGTTGCTTATGATCGGATAGGTAATGAAATCCAAC
GTCGCGATGCTTTCATCACTGGTAAAACCATGCATCAAGAAAAAGtCCCG
CTACTAATCGGAGTACCCACAGTTTATcggtcatacaaaaacaaaacgaG
CTTCTACTTGGATCGTACAATCAAGTCCTTGATCCAACCTCTCTCAAAAG
AAGATAAAAGACAAGTCAACATTCTTATAATTCTTGCTGATAGTGATAAA
ACGAAAAAGACATTCATGTACCAAAAGCTAAAAGACCAGTTCCCAAACGA
AATCCGATCGGGTTTAATCGGGATAATTGGAATCCCGAAACGGTTTTATC
TTCCTCTTCACAATTTAGCACCAACATTTAATGAcacaaataaaagaatg
tattGGCGCTCGAAACAGAGTTTAGATTACGCCTTCATTTTTCAATACGC
TCAAAATCTGTGCGACTATTATCTACAAATTGAAGACGATGTTTTGGCCA
ATGAACAATATTTTGACACAATCATGGAAGATATGAATCGTTTGAACAGC
GCTCGAAATAAAGAACCAGTTATCTTTAAGAATGAGAAAGAAACAAGGCC
GAAATATAAACCATGGATAGTGTCCGAATATTACAAGATGGGTTTTATCG
GACGGTTGATTCCGGCTCACTATTTACCGCTTTTTGCCGGctttattaaa
gtattttataaTGAGCTACCGGTAGATTGGGGTTATACTCATATGCTTGG
ATTGATGGGTGAATACAAAGCAGATCATAATCCATCACTTTTTAAGCATA
TTGGAAAACAGAGTTCGTCCCTTGGGACATAAGCAGGTAGGACATCTGTA
AAACAGTGCCTACAGTGCGTAGACGAAGTaggaaaaagatttgaaaatca
tGGATTTAGAGTTCGGATGCGGTTCACACGACAAGGCGATGTGGTGATTG
GTCTGTCCATGGTTTTATTTTCACTCATCTGTTCATCCATGTTCTTCATA
CAAGTACCAAATTGCTCCAACGAAGACGACCAATTTATGAATGAAGTCGT
TGCTTATGATCGGATAGGTAATGAAATCCAACGTCGCGATGCTTTCATCA
CTGGTAAAACCATGCATCAAGAAAAAGtCCCGCTACTAATCGGAGTACCC
ACAGTTTATcggtcatacaaaaacaaaacgaGCTTCTACTTGGATCGTAC
AATCAAGTCCTTGATCCAACCTCTCTCAAAAGAAGATAAAAGACAAGTCA
ACATTCTTATAATTCTTGCTGATAGTGATAAAACGAAAAAGACATTCATG
TACCAAAAGCTAAAAGACCAGTTCCCAAACGAAATCCGATCGGGTTTAAT
CGGGATAATTGGAATCCCGAAACGGTTTTATCTTCCTCTTCACAATTTAG
CACCAACATTTAATGAcacaaataaaagaatgtattGGCGCTCGAAACAG
AGTTTAGATTACGCCTTCATTTTTCAATACGCTCAAAATCTGTGCGACTA
TTATCTACAAATTGAAGACGATGTTTTGGCCAATGAACAATATTTTGACA
CAATCATGGAAGATATGAATCGTTTGAACAGCGCTCGAAATAAAGAACCA
GTTATCTTTAAGAATGAGAAAGAAACAAGGCCGAAATATAAACCATGGAT
AGTGTCCGAATATTACAAGATGGGTTTTATCGGACGGTTGATTCCGGCTC
ACTATTTACCGCTTTTTGCCGGctttattaaagtattttataaTGAGCTA
CCGGTAGATTGGGGTTATACTCATATGCTTGGATTGATGGGTGAATACAA
AGCAGATCATAATCCATCACTTTTTAAGCATATTGGAAAACAGAGTTCGT
CCCTTGGGACATAAGCAGGTAGGACATCTGTAAAACAGTGCCTACAGTGC
GTAGACGAAGTaggaaaaagatttgaaaatcatGGATTTAGAGTTCGGAT
GCGGTTCACACGACAAGGCGATGTGGTGATTGGTCTGTCCATGGTTTTAT
TTTCACTCATCTGTTCATCCATGTTCTTCATACAAGTACCAAATTGCTCC
AACGAAGACGACCAATTTATGAATGAAGTCGTTGCTTATGATCGGATAGG
TAATGAAATCCAACGTCGCGATGCTTTCATCACTGGTAAAACCATGCATC
AAGAAAAAGtCCCGCTACTAATCGGAGTACCCACAGTTTATcggtcatac
aaaaacaaaacgaGCTTCTACTTGGATCGTACAATCAAGTCCTTGATCCA
ACCTCTCTCAAAAGAAGATAAAAGACAAGTCAACATTCTTATAATTCTTG
CTGATAGTGATAAAACGAAAAAGACATTCATGTACCAAAAGCTAAAAGAC
CAGTTCCCAAACGAAATCCGATCGGGTTTAATCGGGATAATTGGAATCCC
GAAACGGTTTTATCTTCCTCTTCACAATTTAGCACCAACATTTAATGAca
caaataaaagaatgtattGGCGCTCGAAACAGAGTTTAGATTACGCCTTC
ATTTTTCAATACGCTCAAAATCTGTGCGACTATTATCTACAAATTGAAGA
CGATGTTTTGGCCAATGAACAATATTTTGACACAATCATGGAAGATATGA
ATCGTTTGAACAGCGCTCGAAATAAAGAACCAGTTATCTTTAAGAATGAG
AAAGAAACAAGGCCGAAATATAAACCATGGATAGTGTCCGAATATTACAA
GATGGGTTTTATCGGACGGTTGATTCCGGCTCACTATTTACCGCTTTTTG
CCGGctttattaaagtattttataaTGAGCTACCGGTAGATTGGGGTTAT
ACTCATATGCTTGGATTGATGGGTGAATACAAAGCAGATCATAATCCATC
ACTTTTTAAGCATATTGGAAAACAGAGTTCGTCCCTTGGGACATAAGCAG
GTAGGACATCTGTAAAACAGTGCCTACAGTGCGTAGACGAAGTaggaaaa
agatttgaaaatcatGGATTTAGAGTTCGGATGCGGTTCACACGACAAGG
CGATGTGGTGATTGGTCTGTCCATGGTTTTATTTTCACTCATCTGTTCAT
CCATGTTCTTCATACAAGTACCAAATTGCTCCAACGAAGACGACCAATTT
ATGAATGAAGTCGTTGCTTATGATCGGATAGGTAATGAAATCCAACGTCG
CGATGCTTTCATCACTGGTAAAACCATGCATCAAGAAAAAGtCCCGCTAC
TAATCGGAGTACCCACAGTTTATcggtcatacaaaaacaaaacgaGCTTC
TACTTGGATCGTACAATCAAGTCCTTGATCCAACCTCTCTCAAAAGAAGA
TAAAAGACAAGTCAACATTCTTATAATTCTTGCTGATAGTGATAAAACGA
AAAAGACATTCATGTACCAAAAGCTAAAAGACCAGTTCCCAAACGAAATC
CGATCGGGTTTAATCGGGATAATTGGAATCCCGAAACGGTTTTATCTTCC
TCTTCACAATTTAGCACCAACATTTAATGAcacaaataaaagaatgtatt
GGCGCTCGAAACAGAGTTTAGATTACGCCTTCATTTTTCAATACGCTCAA
AATCTGTGCGACTATTATCTACAAATTGAAGACGATGTTTTGGCCAATGA
ACAATATTTTGACACAATCATGGAAGATATGAATCGTTTGAACAGCGCTC
GAAATAAAGAACCAGTTATCTTTAAGAATGAGAAAGAAACAAGGCCGAAA
TATAAACCATGGATAGTGTCCGAATATTACAAGATGGGTTTTATCGGACG
GTTGATTCCGGCTCACTATTTACCGCTTTTTGCCGGctttattaaagtat
tttataaTGAGCTACCGGTAGATTGGGGTTATACTCATATGCTTGGATTG
ATGGGTGAATACAAAGCAGATCATAATCCATCACTTTTTAAGCATATTGG
AAAACAGAGTTCGTCCCTTGGGACATAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12309MSTRG.12309Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12309.1.p1MSTRG.12309.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12309.1.p1.exon1MSTRG.12309.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12309.1.p1.exon2MSTRG.12309.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12309.1.p1.exon3MSTRG.12309.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12309.1.p1.exon4MSTRG.12309.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000092_pilongenomesc0000092_pilon:821176..827038 +