MSTRG.12289.1.p1 (mRNA) -

Overview
NameMSTRG.12289.1.p1
Unique NameMSTRG.12289.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000092_pilon:555953..557927+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12289.1.p1 ID=MSTRG.12289.1.p1|Name=MSTRG.12289.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1975bp|location=Sequence derived from alignment at sc0000092_pilon:555953..557927+ (Clytia hemisphaerica_ch_hm2_pilon)
GTAtatatgtacggcattcgggttcaaaaggttaagaacaatAGATTAAT
AATGATCATCCCCAGATTATCTAGAAGTTGAGAAAAATGTAACACTTACT
CTTACAGACTCTTGTTAGGTTCAATAAAAATGGAGGCTTCACCTTCTAAA
CGAATTCATAAAGAGGTGAGTCTTCAAACAAAATATATGGCGCTGTTGGA
GCTTGAAAGtggaaaaacaaacaaagaagtTTGCTTAATGTTTGAAGTTC
CCTCAAACACGATATCTACCTGGAAGAAGAAcaaatccaaaatctttgaa
gctcTTCAGAAATGGAAGTCCTGCAAGTAAGAGGCTCAGAGTTGGACAAA
TTTGATCAAATCAACAAAGCTGTTCTACAATGGTTTCACCAAATGCAACT
AGATAATGTTATAATTAACAGACCCATGGTCAGGGAAAAGGCTCTATCAT
TTGCAAAAGAGATGggagttgaaaattttcatgctTCTAATGGTTGGCTT
GAGAAATGGAAGAAAAGGTAGATATCAAAATTCCATTAGTCAATTTTTAA
ACGTTAGTCACATGAGAAGAGTATAATTGTTGCCAAAGAGCTGATTGGTG
TCTTTtgatctttgaaaatttattgtcaaaatcttctttgttgttgtttt
tactaAACTTTGTTTCAGATACAACGTCTCATTCAAAACTGCATCAGAGG
CAGCAAAAGCTGAAAGAGATGGAATGATGCCTCCAAGTATTGAAGCAACT
CTACCAATGCTCCTATCACGATATACTTTGAAAGACATTTTTAATGCTAA
AGAATTTGGCTTGTTTTACCAGTGTCTTCCTGGGACGATTAGCCATCTGG
CAGAAGAGAACTGTGCAGACGGAAAACATAGTAGCTCTCGTTTGACAGTC
GTTGCGGTTGCTAATGCATTTGGTGAAAGAATGGAAATCTTTGTTATAGG
TAAGCCTGCCAATCCTAGTTCCTCAGAAGATGTTAAAAATATTCCATGTC
GCTATCGATCTCAAAggaaaagttggatggattcaaGTTTATTTGAAGAG
TGGGTTAGGGAACTGGATACCAAGTTTGGCGAGTCAGGTAGAAAAGTTGC
TTTGATTGTTAGCGATTCTTCTGCTCACCCTGATATAGATGGTTTACAAT
GGGTTGAGCTCATCTTTGTTCCTCCAAAAACTGACTCAATGACACAGCCC
ATGGATCAAGGTATTGTCAAAtatctcaaaacaaaattccgCTCACTTCA
AGTCAAGAAACAGATCCTGGATTGTGAGAAATTCAATGAGCTTTCCAAAC
TTTCTATCCCTGCTATTATGGCAATGCTTTTACAGGCTTGGCATTCTATt
ccttttcaaacttttaccaGTTCATTTCAAGAAGGCAGGTTTGCTAATTG
AAGCTACAGAGAGAATATCAAATGATCATGATGATGAGTTTGTTATAACC
ATCTTGAATGAATTAGAAGCAAATCTCCTGTTATTAAAGGAGAAATTTGG
ATTGGATTACAAATTAACTGCTGAACAACTTATCAACATTGACTCCCAGG
TATCTGTCACTGGAACCTTATCAGATGCTGACATCATTGCTGGAGTTTAT
GGCAACTCTGTAGATTTGAGTGATGATGAACCTGACCAACCGCAACTgga
ggaaaaaattgttttaagacCATCTAAAAATTCAGTGTCAAATGCAATTA
AAACTTTAGAGGATTATAGTGTGTTTTCCAAGTTTGGCACTGATATAATA
ACTGCCTTAAAACAAATACAAAGAGCTGTTGATTTGGACAACCAACTTAT
TAATAGTGGCTCCaaaaaaaTCGAAGAGTAAAACCTGTGAGACAGTGACA
TGGTTGTCTCttatttgtaatatattttgtaGTCTATTTTAAAGGTAGAT
aaaaaaaCAGTCTTCTTTCTATCTGCTGAATGTTTCAACCATTATCTCCA
AGAAGATTGCAACAGGGCATTTTAC

Coding sequence (CDS) from alignment at sc0000092_pilon:555953..557927+

>MSTRG.12289.1.p1 ID=MSTRG.12289.1.p1|Name=MSTRG.12289.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1878bp|location=Sequence derived from alignment at sc0000092_pilon:555953..557927+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAAGTCCTGCAAGTAAGAGGCTCAGAGTTGGACAAATTTGATCAAAT
CAACAAAGCTGTTCTACAATGGTTTCACCAAATGCAACTAGATAATGTTA
TAATTAACAGACCCATGGTCAGGGAAAAGGCTCTATCATTTGCAAAAGAG
ATGggagttgaaaattttcatgctTCTAATGGTTGGCTTGAGAAATGGAA
GAAAAGATACAACGTCTCATTCAAAACTGCATCAGAGGCAGCAAAAGCTG
AAAGAGATGGAATGATGCCTCCAAGTATTGAAGCAACTCTACCAATGCTC
CTATCACGATATACTTTGAAAGACATTTTTAATGCTAAAGAATTTGGCTT
GTTTTACCAGTGTCTTCCTGGGACGATTAGCCATCTGGCAGAAGAGAACT
GTGCAGACGGAAAACATAGTAGCTCTCGTTTGACAGTCGTTGCGGTTGCT
AATGCATTTGGTGAAAGAATGGAAATCTTTGTTATAGGTAAGCCTGCCAA
TCCTAGTTCCTCAGAAGATGTTAAAAATATTCCATGTCGCTATCGATCTC
AAAggaaaagttggatggattcaaGTTTATTTGAAGAGTGGGTTAGGGAA
CTGGATACCAAGTTTGGCGAGTCAGGTAGAAAAGTTGCTTTGATTGTTAG
CGATTCTTCTGCTCACCCTGATATAGATGGTTTACAATGGGTTGAGCTCA
TCTTTGTTCCTCCAAAAACTGACTCAATGACACAGCCCATGGATCAAGGT
ATTGTCAAAtatctcaaaacaaaattccgCTCACTTCAAGTCAAGAAACA
GATCCTGGATTGTGAGAAATTCAATGAGCTTTCCAAACTTTCTATCCCTG
CTATTATGGCAATGCTTTTACAGGCTTGGCATTCTATtccttttcaaact
tttaccaGTTCATTTCAAGAAGGCAGGTTTGCTAATTGAATGGAAGTCCT
GCAAGTAAGAGGCTCAGAGTTGGACAAATTTGATCAAATCAACAAAGCTG
TTCTACAATGGTTTCACCAAATGCAACTAGATAATGTTATAATTAACAGA
CCCATGGTCAGGGAAAAGGCTCTATCATTTGCAAAAGAGATGggagttga
aaattttcatgctTCTAATGGTTGGCTTGAGAAATGGAAGAAAAGATACA
ACGTCTCATTCAAAACTGCATCAGAGGCAGCAAAAGCTGAAAGAGATGGA
ATGATGCCTCCAAGTATTGAAGCAACTCTACCAATGCTCCTATCACGATA
TACTTTGAAAGACATTTTTAATGCTAAAGAATTTGGCTTGTTTTACCAGT
GTCTTCCTGGGACGATTAGCCATCTGGCAGAAGAGAACTGTGCAGACGGA
AAACATAGTAGCTCTCGTTTGACAGTCGTTGCGGTTGCTAATGCATTTGG
TGAAAGAATGGAAATCTTTGTTATAGGTAAGCCTGCCAATCCTAGTTCCT
CAGAAGATGTTAAAAATATTCCATGTCGCTATCGATCTCAAAggaaaagt
tggatggattcaaGTTTATTTGAAGAGTGGGTTAGGGAACTGGATACCAA
GTTTGGCGAGTCAGGTAGAAAAGTTGCTTTGATTGTTAGCGATTCTTCTG
CTCACCCTGATATAGATGGTTTACAATGGGTTGAGCTCATCTTTGTTCCT
CCAAAAACTGACTCAATGACACAGCCCATGGATCAAGGTATTGTCAAAta
tctcaaaacaaaattccgCTCACTTCAAGTCAAGAAACAGATCCTGGATT
GTGAGAAATTCAATGAGCTTTCCAAACTTTCTATCCCTGCTATTATGGCA
ATGCTTTTACAGGCTTGGCATTCTATtccttttcaaacttttaccaGTTC
ATTTCAAGAAGGCAGGTTTGCTAATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12289MSTRG.12289Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12289.1.p1.exon1MSTRG.12289.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12289.1.p1.exon2MSTRG.12289.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12289.1.p1MSTRG.12289.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000092_pilongenomesc0000092_pilon:555953..557927 +