MSTRG.12245.1.p1 (mRNA) -

Overview
NameMSTRG.12245.1.p1
Unique NameMSTRG.12245.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000091_pilon:1108551..1111575+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12245.1.p1 ID=MSTRG.12245.1.p1|Name=MSTRG.12245.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3025bp|location=Sequence derived from alignment at sc0000091_pilon:1108551..1111575+ (Clytia hemisphaerica_ch_hm2_pilon)
GAACAACAATCTAAGGAAGGGAATTTTTTAATATCATAAACTAAAATATC
ACGCATTAAAGCATTTAATTACAACATTTAGCAGGGaatttttgtaaaga
tttttcaCTTTCTAAGAAAATAAGTCGAAAAATCAACAGCAATTATATAA
AGTGTGGTTTTGTCTGGTTAGAAAAAATCAGTTTGAAAAAGTGGACAACC
GCATCATATCATCTGTTAAAGATTTGAATctggaaaaaaacttttgacag
AAAAACGAGCAGTCTGTTGAAGTAGTAAATCAATCATAACATAATCATGG
ACGGATACAAACTAGCCTCGGTCCAAATCAacgttttggtgtttttctat
GTCGTTATCAAAAGgttcattcaaatttttcgaaaacatGAGAAACGAAC
AAAAATGGACAATTGTATATTGAAACCATTTCCATGTGAAGAAGTgacaa
gaatgaagaaagaaattCATGAAGAACATGCTAAAGCAAGAATGTAAGTA
AAATTGACAATACACGATTTTTTAAGAGCCTCCAAAAGTCTTCCAATgtc
ctttcaacttttttagttttgatccttaaaatgttcttatttcacTATTT
TGCGAgtgtttttgttcattttgttaagtctgaataattttttaacttgt
tctcgTGTATCCTTATATCTTATATAGTctattttcatagaaaaaacgtg
tattataaGTTTACTAAAAGACAACATTGTGCCGacgtagacgatgctat
cgtccgtataatatattattataatattatgatataacatagttgtatat
tataaaacgtaatatgtagcgcggcggaaaatagagtctgtgtttaagaC
ATTGAGCCCCTCCGATTATTTTTCGCCCGCGCGGACAAAATTTCCGCCCG
ACTGCTAATTTGCGTGTTTCagattattctttatttttcgaattcgtctt
agactatagcatagtctagtgCCAACGTTCCTCTAACGTGTCTACCCTTT
TGAGGGCGGCGGAGTGACCgaaaagatttgaaataatcTACAGTTCTGAC
TTCCAATCTAAATTGAGGaaggtaaaagtgctgatttgcctaagtcctca
gtcagtcaggatctaaaATAATGAAAGCTAAACATATATATGCCACAGTA
ACCACAGTATACATAAAATCGACAATACAAAGACTAAGGTTGCTTAGACT
CTCTAACCCTTTATTACCCAAAATAGCATGGTGGTTTAATATTATAAGAA
TTTTGTACATCGGTACTATAAATGATGTGCAATAtatcaaatgttttttc
attcagcgatccttattctatttttttctatatttcagGGTGGTCAACTC
AATCTCCAGTATCCTGATATTTGCAATGTCAATGGAAATCATATTTTGCA
CAGATCTTATCTCCTATCCTTTCATTGGAGTACATCAAAAACTCTACTTC
GGTTCAATCTCACTTATCAGTGTATGTGTCTTCAACTTAGTGTTAAGCTT
AGCAACATACAGAAACAAAACAGCAATGCTTCATCATCTATGTCGATACA
TTATTGGTCTAACAGTCTTGTTGACATCATTATACACAAATGAGATACCT
TTATGTTCTGCCATTGCTATGGTTACCGTTGGAAGTGTATTCACTGATGA
AATCAAAGAAGTTCTTAAACTGAACGAAACCAGAGGGAAATATTTCTCAA
TCTTCTTATTAGCTCATCTCATCATGAATTATTTCTGTCAACTCTTGTTA
CCTATCATGATCGTAGTATTCGCAATGTGGAACACTAAACAAAACTTCTT
CACTACTCATACAGTATCCatggtaatttttttcatagcatcAGCTTTTA
TGTTGGCCTACAGCATATGGCGACTGAGGAAGCTTACCATGGCTTACAGT
AATGAGAAACTAAGAATCAACACACGTAAAATAGTTGAACAATACGGCAC
AGATACAATCAATACTGCATCAGGATTCACCAACTTGTCATTGGTGACTG
ACTCCCAAGGAAGACGTACTTCAACCATTCCAATACCTTCTACTGCTGAA
TCACAAAAACTGGAAACaataaaagtcattaaaaaggGAGAAGATGATTT
TGTGCCTTCTTTTACATTCTAAGAACTTTATAGTTAAGCTTTTTCTAGAC
AGCGAACATTTTGGAAAGAAAGACACTCAAAATTACTCAATATTTTGGAG
AAGTCTTTTAGATGGAGCATGATTGGATTTTACTggattttttaaacgac
tttttTCTTACTGGGAAtagaacaaaattttcaaaagagtaaTGCAAAGA
CGAAACTTATAAGATTCAAAACTTAGGATATACCAAactcaaacaaaatt
tgtttgctCATAAAGATTTTTAACTATTTTGTGTGCGAGAAAGACAAAAA
TGAGAGGAATTGTGTtactttgaaagattttttgatgtCTTATAAAGGTA
TTGTTGGTTTAGtcgtttttttttagatattgtcTACATAGCCAAGTCGA
GTCAGGACTTGCAAGTTTCCTGTCCAGAATATGTCACGACTGTAGTTATT
TACTTTAAATGATTGCTTTCTTACACTGTAAaccatttaaaaacattttc
gttTTCATACGAAAGTTTATTTTAAACCTCCTTGAACGATACGTGTCTTT
GATTTATTTGAGccaattaaaattttgtttgaagaaaACTAACACCTCAG
GCACTTCCACTTTAGACCTAAATTTTGTGACCTAGtagtagtttttttta
attatgtgGAAAAGAGCTATCTCTACGTGTCTGACGTTTTGAGGTCATAT
TTGCATTTTATCAAAGTATACGATCAATTTCTGACACTtctgtcaatcaa
aatttcaattcataACAAGACTGGAAGTGTAACAATCTTTACTTTATTCT
TATAATCAATTATGttttttaatactttaaattgtagataatttcaaaat
tttgtatttcagattatattttgtattttctttttttaactgtaaatttt
aGAATATAAAAATCAAGAATCTAAA

Coding sequence (CDS) from alignment at sc0000091_pilon:1108551..1111575+

>MSTRG.12245.1.p1 ID=MSTRG.12245.1.p1|Name=MSTRG.12245.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1962bp|location=Sequence derived from alignment at sc0000091_pilon:1108551..1111575+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGACGGATACAAACTAGCCTCGGTCCAAATCAacgttttggtgttttt
ctatGTCGTTATCAAAAGgttcattcaaatttttcgaaaacatGAGAAAC
GAACAAAAATGGACAATTGTATATTGAAACCATTTCCATGTGAAGAAGTg
acaagaatgaagaaagaaattCATGAAGAACATGCTAAAGCAAGAATGGT
GGTCAACTCAATCTCCAGTATCCTGATATTTGCAATGTCAATGGAAATCA
TATTTTGCACAGATCTTATCTCCTATCCTTTCATTGGAGTACATCAAAAA
CTCTACTTCGGTTCAATCTCACTTATCAGTGTATGTGTCTTCAACTTAGT
GTTAAGCTTAGCAACATACAGAAACAAAACAGCAATGCTTCATCATCTAT
GTCGATACATTATTGGTCTAACAGTCTTGTTGACATCATTATACACAAAT
GAGATACCTTTATGTTCTGCCATTGCTATGGTTACCGTTGGAAGTGTATT
CACTGATGAAATCAAAGAAGTTCTTAAACTGAACGAAACCAGAGGGAAAT
ATTTCTCAATCTTCTTATTAGCTCATCTCATCATGAATTATTTCTGTCAA
CTCTTGTTACCTATCATGATCGTAGTATTCGCAATGTGGAACACTAAACA
AAACTTCTTCACTACTCATACAGTATCCatggtaatttttttcatagcat
cAGCTTTTATGTTGGCCTACAGCATATGGCGACTGAGGAAGCTTACCATG
GCTTACAGTAATGAGAAACTAAGAATCAACACACGTAAAATAGTTGAACA
ATACGGCACAGATACAATCAATACTGCATCAGGATTCACCAACTTGTCAT
TGGTGACTGACTCCCAAGGAAGACGTACTTCAACCATTCCAATACCTTCT
ACTGCTGAATCACAAAAACTGGAAACaataaaagtcattaaaaaggGAGA
AGATGATTTTGTGCCTTCTTTTACATTCTAAATGGACGGATACAAACTAG
CCTCGGTCCAAATCAacgttttggtgtttttctatGTCGTTATCAAAAGg
ttcattcaaatttttcgaaaacatGAGAAACGAACAAAAATGGACAATTG
TATATTGAAACCATTTCCATGTGAAGAAGTgacaagaatgaagaaagaaa
ttCATGAAGAACATGCTAAAGCAAGAATGGTGGTCAACTCAATCTCCAGT
ATCCTGATATTTGCAATGTCAATGGAAATCATATTTTGCACAGATCTTAT
CTCCTATCCTTTCATTGGAGTACATCAAAAACTCTACTTCGGTTCAATCT
CACTTATCAGTGTATGTGTCTTCAACTTAGTGTTAAGCTTAGCAACATAC
AGAAACAAAACAGCAATGCTTCATCATCTATGTCGATACATTATTGGTCT
AACAGTCTTGTTGACATCATTATACACAAATGAGATACCTTTATGTTCTG
CCATTGCTATGGTTACCGTTGGAAGTGTATTCACTGATGAAATCAAAGAA
GTTCTTAAACTGAACGAAACCAGAGGGAAATATTTCTCAATCTTCTTATT
AGCTCATCTCATCATGAATTATTTCTGTCAACTCTTGTTACCTATCATGA
TCGTAGTATTCGCAATGTGGAACACTAAACAAAACTTCTTCACTACTCAT
ACAGTATCCatggtaatttttttcatagcatcAGCTTTTATGTTGGCCTA
CAGCATATGGCGACTGAGGAAGCTTACCATGGCTTACAGTAATGAGAAAC
TAAGAATCAACACACGTAAAATAGTTGAACAATACGGCACAGATACAATC
AATACTGCATCAGGATTCACCAACTTGTCATTGGTGACTGACTCCCAAGG
AAGACGTACTTCAACCATTCCAATACCTTCTACTGCTGAATCACAAAAAC
TGGAAACaataaaagtcattaaaaaggGAGAAGATGATTTTGTGCCTTCT
TTTACATTCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12245MSTRG.12245Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12245.1.p1.exon1MSTRG.12245.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12245.1.p1.exon2MSTRG.12245.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12245.1.p1MSTRG.12245.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091_pilongenomesc0000091_pilon:1108551..1111575 +