MSTRG.12221.1.p1 (mRNA) -

Overview
NameMSTRG.12221.1.p1
Unique NameMSTRG.12221.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000091_pilon:776882..784928+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12221.1.p1 ID=MSTRG.12221.1.p1|Name=MSTRG.12221.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8047bp|location=Sequence derived from alignment at sc0000091_pilon:776882..784928+ (Clytia hemisphaerica_ch_hm2_pilon)
tttcagactaATCACTACTAAATCAACTAACAATTAATAAAACTAAGGAG AAGCAGAAgatgaaatttgcaaaaattataTAACTTAACTTGCAAGATTG ATCAATAAAATCAAGGTACGTAATAGTCAAGTTTATTTTAGGAGTAGAGA CATAACTTAAGTCTGCTTCAAAATTTTgcgttttttatttatatagttAC CGCACACTAGTTCTACATCTCACGATATTCATCACGTGatattttatacg gaagcaccagGTCCGGGTGTTCAGtacttattttgaatttaaacaataaa actagtgaCAAACGCCCGGAGCTAttttcgggtgcttccgtattgAATGT CATGTATAGAGAAACTTGCAGAGTCTATCTTTGCATATTTTTAACAAGCC TTGTAATACGAAGCTGACGAGGACGTAATGGTGTTTAAAGCTGGGAAAAA AGATCTTTTAGATATTCGTAAAAATGTGTATGGTCAAATATTGGTAGTAT TAGACTGGAGACGTTTATAATGCGTCTAATACAGTATTAtgggcgttata tgataataagACTATttttacgggatttagtttgtacactgtatttctac tatgtctgaattagtcgtctagttTGCTAGACTATGGTAGTATTAATTAT AAAAAGTATTTGTAAATTTGAtttaagaaaatgtttaaatgtCGATCGAG TCAAAATGGGAGTCAACACAAGTCACGAACGACACTTTAGTTAAAACGGA GCCATAGGTTTTCTTTGACGCATCTTCACTGtggaaaatggctaaaaatg aataaaataaaacatttagctaacgaaatacgaaatacaaataaaGTACG AGTCAAGatataaagatacatcagtTAGATTACAAAGACAAGTCAAAGAT ACAACATATAAAACAACAAATAGAAACTTACTAAAAACACTGTGGCTGAA CATACACGTACACGTCAACAGATACTCTCAACTAACACTCACAATTCCAA TACGTATATTTATAGCACATCACAACAACTCATACAACAACTAGACAATC CTCAAGGGACGAACACATAACTATACACACAATACTGCACTATACAATAC AATAAGCAACTCCCTAGACACATAATATAGACAATACACATGGGACTAAT ACAAATTATATAGTAATCATTTACAGTTTCACTACAAAAGTCCtatcaaa taataaatctaaGTACAAAGGAAACGATGAAAACAAACGTAAAACTAAAA GACAAATTAGCTGCATTTTGGCAGTTACAAAATGCGATCTTAGacttaaa aaacttaaatctCTGATACAATAAGTTTATAGGAGGCTTATGAAAAAAGG GTTGTGTCAAGTGCTGTGAACTTGTAATTCAAATGAAGCGATAAAAGTAA ACTTAACGCGtgactttaaattttcaacgtattttgtttgctatattttt tattgactttttttaggttttagttgtttgtttttccaaaatcaataTAT GGAGCTACAAATATTCGCATTCTCTATAAagatgatttttcaattttgac attttctggttgttggacctaccccggtggggtggaggtcctataaatta acccgtgttcgttagttagttagttcgttcgttcgttcgttagttaccaa cttttctcgagattggctcattcaatttttctgattttttgcacaaaggt gcattactataaaccctcgaatgtgacggagcccgattttcgaaaaaaaa atttttccggccggtagaaccggaaatgtcccgaaaaaagcggttttttg agattttctcgagattttatcattagttttttgcgattttttgcacatag atgcacattagtactgccgaaaaggtgtcgaaaaccgtttgcggaaaaaa aatttttccggtctgtagaaccggaaatgtgccggaaatcgtcgtttttt tcacatttccgtcacattttttcaacttaccgggtgacccacgaaaaagt tcggacgtttcccgacatcttgaggccgaacaaatgtcctaAAGTGCTCg gagtttagatatttagaaagtagatatcctaacttaaaatttgagctatc actttttaaatttgaccaatttgttctctatttatgagcttttaaagtca aaattcacttttcggaaagtgtaaaaaacacgtaaaaaagaggtattaaa tttatgcaatcaattagaaaatcacttacaaattgacttatttaacgaat gacattaataattaataaaaacacctttaaaagtaatttttgtttaaaac aagactagtttttataaaaattggcgcttttgtagatttttcagattttt tttaaaaactgtatatcaaaaacgtctaaaaataccaaatttgatacccc ttttttacgtgttttttacactttccgaaaagtgaattttgactttaaaa gctcataaatagagaacaaattggtcaaatttaaaaagtgatagctctaa ttttaagttaggatatctactttctaaatatctaaactccGAGCACTTta ggacatttgttcggcctcaagacgtcgagaaacgtccgaactttttcgtg ggtcacccggtaccgggtgacccacgaaaaagttcggacgtttcccgaca tcttgaggccgaacaaatgtcctaAAGTGCTCggagtttagatatttaga aagtagatatcctaacttaaaatttgagctatcactttttaaatttgacc aatttgttctctatttatgagcttttaaagtcaaaattcacttttcggaa agtgtaaaaaacacgtaaaaaaggggtatcaaatttggtatttttagacg tttttgatatacagtttttaaaaaaaatctgaaaaatctacaaaagcgcc aatttttataaaaactagtcttgttttaaacaaaaattacttttaaaggt gtttttattaattattaatgtcattcgttaaataagtcaatttgtaagtg attttctaattgattgcataaatttaatacctcttttttacgtgtttttt acactttccgaaaagtgaattttgactttaaaagctcataaatagagaac aaattggtcaaatttaaaaagtgatagctctaattttaagttaggatatc tactttctaaatatctaaactccGAGCACTTtaggacatttgttcggcct caagacgtcgagaaacgtccgaactttttcgtgggtcacccggtatttaa ttgtttctttacagaaaaatgttctttatgatgatgcccaaaacttagca ttatttgatttccaaaaaaatcatcctttgaatccggaactccttaaaaa tcgccggaacagtcgaaaaccggcgtaaaacggttttccttcattttttc aacttatactcgacagattttcatgattttttgcacaatgatgtaaaatg gcaatgcccaaaatgtgacagagcccaattttcgaaaaagaaatttttcc ggccgctagaaccggaaatgtcccgaaaaaagcggTTttttgagattttc tcgagatgaatgattgattaaagtgtcgatattatttttctttcaccgtt aaacatcgatgcgtttcttaattgctttctccgttccaatagatatataa atcgaaatttaaaattatacattacttccattaaattctaattattcgtt ttataaataggtaggtccattaaagtattacttgtttctAATTGATTAGC TTATACTCCTGTCTTGCATGAACTTTGCGGTTTGGTATATTGGAGGAACA AAaccgtacacgttttttaattagaatttaatgacaagccaaatttgttc aaaattatctgaaacttaaataatttcagtaattcttttactttcaaact tttgctATTCGGCTTGAGGACCATTTTCTTTATCTCAAGTTCTGTATATT CAAGTGAATTAATTTAcagaaaatacaaataaaaagattttagacTCAAA ATTGTCtctttttttcagataatttaaTGCAGAAGAACTCACCATGGGCG GTCAGACGACGATTGTGGAACCCATCTTATTCGCTTACATGTTCAACAAT TTCATTCTATCACCCGTCGAATAACAACTAGTCTTCAGAAAAACATGCTT TCAAAACTTCAACAAATCATACTGTCAAATTCTATTCGAATCGAAAAACG AAACTTATAAGGACGATCAGAATTTTTTACAAGAGAAAACTTCACAATGG GACATTTACTCTAATTTGGTTCAAATGTTACCAGCTATTATATCCACGCT GGTTTACACCAGTTGGTCAAATAGAATCGGTCTCAAACGGGTTATGATTC TACCCATGATTGGAGGGACAATACTAACAATAACACTTATCTTAAACTCA TACTTCGAGGAATGGCCTTTAGAGTTGTTACTTATTGGTTCTTTCCTAGA TGGTTGCTTTGGCCAATTTGTAGCAATCATAGCATCTATTTATTCATACG CTGCTGATGTGACGTCCATTGAAGGACGTACTAAACGAACAGTCATTCTT GAATCTATGATGTTTCTTGGTGGTGTCGTTTCAAGTGCAATCAGTGGTAT CTTATTACAGAAATATGGTTTCATACCAACTTTCCTACTGGTATTAGCAA TGTTTGCTTTTCAAATGATTTATTGGtgttttttacaagaatcaTATCCA CCAAGGCCTGACCAACCGAAGATTTCATTTTGTCAGATCTTGAAAGGTGA GCATTGACAGGTGCCGTTCGTGTTGTGTTTAAGAAGAGGAATGGTAACAA ACGAAGAACCATCCTTTTGTTGTATGTTGTTCTATGGCTCTTCACTTCGG GTAagattcttcctttttttctacCATAGCTATTTGAAAATGAAGCTGAC AGCAGTAATGATACTCCTCAGCGGTTTCAGTGTGATAGAGTGATCCAAAG TTCTTATTGCGTGGTAGTGTGATCAAGATTTTAGCATAATACATAATAGA GCAAAAATTTGAGATACAATGCGTGATTTTGgctattttggttattttta tgCGATAATAAATcttagcgattttcgtaatgTGTTACGGACAAAAAATA TTGCGTGATATTGAGGGTGCCTCTGGGGCCTCAGTAATGTTCTGGCGTTA TTACGGTCTTACAGGCTATTGCCAAGATTAACTTTGTTGGAAAATGAGTC GTTCCAAAAGAATTTTCGTAAATTCTTTCCAATTTAACTAcctattctaa aattttcaatttttttatttttcttccctAGTGTACACTGGATACGGTGA TGTGAGTGTTCTATACATCCTACATCCACCAATCAATTTCTCTTCTGCCA ATATTGGTTACATGTATGCACAGTTCAATGGTCTCAAATTTATTGGTGCT TCATTCATCAATTATGTCTTCTTGCACAAATTGGGTATTCCTGACATTCG AATATTGACCATTTTTCCGTTGGCTTTTATTGGTTTTTGTTTAACTTTGG CGTTTACAACGACGGCTTGGCAAGTCTTTGCATGTAAGTGACAGATTTAT GAAACTTCTTATTCCGTGTTCTTAAAACTTATccttaaggccggggaaaa ccgatccaacatttcatccaacatgccttttttctgatgttggatgaaat gttggaccagTTTGggtcaattcaaatttttggagaaaaattaaaattca aaaaaagaagaaaaaaatcgtgttggatggtgttggatgaagtttgatcg ccatcaaacatttcatccaacatttgcatttttcatttttttccaagtca tattggatgaaatgttgggtCGGTTTGCCCCGGCCTTGATTTTGGCTTCA TCCAACGcgttagaaaaaaaatgaaaattcaaaaagaaaagaaaaaagtc tttctgaccaatcttgctccatatccgtgtcaattcaatattaaaaagct tgtgaattagaaTTGATGAGTTAGCAAGcattatcactcttatttaaaaa caaaacctttaaagccgAGAAAACACCAGAGAATTCAGCAACTATTACCT TAGGAGAACTTATAttttagcgggaactaattttgacaagcggcaaaaat cctgaaaattttttattttagcgagaacttattttggcgattgatgaatt tttttaattttggcgggaactaattttggcgaatgacagtgtaaatctgt tctattttgccgtATTAGAAGCTTTTTTGTaaactcaagaagttatttat ttcaaaatagcaaaaattttaattttagtgggaacttattttggcgagtg agcaaaatatttaactttggcggaaactaattttggcgaattttgtctaa gggagtggtcataaagtatctactaggggggagtggaggatattttgaaa aatcccaaaatactttcgcaccccctcccctagcctggaaaaaaatttcg aaccccccctcataaggcccaatattttttcgcaccccccccccactaga aaaattttacgcaaaaaagaattcataccgcatttgtttgtatgacagtt ttttatgtcaaaattaggtaagggagatagtttagccctgtaaagttgag tatagtcctttaggagatctatcattttgattgacgtttacaccacggaa ttttttccgtcgatttccatggttacgacggaatttctctgaagtaaaca aaagaaaaaaacccgtggtgtaaacgtcaatcaaaatggtagatctccta tAGGAATAGTCCAGGGTTAAAATAGGAATCAACGAGTTATTTTCTCTGAG tttcccaaagttttgggagaaAATTACGGCTTATTTTTCCTGATACATAA TCTCCCTACATTACAGAGGCATTActcaattactcaaaatatcctgaggg gccaccatggttggccccgaagggagaaaatttagaagatcaggtactcg agaccctaaaatacaagctattccgttgttaaaaggagtctgaaaaataa cattctctgagtttgaaatttccctataaacctatattttcaggttttcc agggtctgtcaaagctctgtgtatataatttataagatattagtagagac aaggaggcacaaccatggtttgcgccgacgggagaaaatgtcgatgtttt tcaccaccattttagctaaaagacactttgttttgacaaatttctttcta aaaagtactttttcaaaccactctgatgagctgtgaaagCCACCAAGCTA CTTCCCTATTTAGCTCAGTgctacaaaccaaaagggcaaggcgatgatgc ccaaataatgttagtatgacatgtacacatatcaaataaaataaattctg agTTGTCGGCCGTTaggccgaaaaatttttgaaatcttgaaacgtaaaac tatgaaattagacttcctacattttctcttgcgttgcccaaaagatttgg aaccccccccccctaaaccctcaaaaaaaatttgaaacccccccctaaac cctcgaaaaaatttagaaacccccccccccctagaatcctccaccccccc tagtagatactttctgaccactccctaaattcgccaaattcgccaaaatt agttcccgccaaaataagttcccttaaggtaaattaCCTAGTTTCTGTAG TAATGTTCTGTCGTAAATAAGAACATTAATCCAAAATTTTGCGTTAAAGT attcaatttcaaacaaaaaaatgtttaaagtcACCAAATTTTCTACCCAT AAGGTAGTGTCAATGTCATAATAATATGCTTcgaaagttttcaaagaaag tccttatataaattttacaattattaatacactcttctcgagatgcataa atttattgttgtcctcgttttcaaacagatttcattgctatgaaattata catttaaaccaatttaaattcccaaaaggcaaatattaactctaaaacaa aagtacttgaaattcaaaatgtctcatgaggtgtaaacaacacaattatc attgtgaatatgtaattttatagcaacgaaatctgtttgaaaacgag

Coding sequence (CDS) from alignment at sc0000091_pilon:776882..784928+

>MSTRG.12221.1.p1 ID=MSTRG.12221.1.p1|Name=MSTRG.12221.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=483bp|location=Sequence derived from alignment at sc0000091_pilon:776882..784928+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTACCAGCTATTATATCCACGCTGGTTTACACCAGTTGGTCAAATAG
AATCGGTCTCAAACGGGTTATGATTCTACCCATGATTGGAGGGACAATAC
TAACAATAACACTTATCTTAAACTCATACTTCGAGGAATGGCCTTTAGAG
TTGTTACTTATTGGTTCTTTCCTAGATGGTTGCTTTGGCCAATTTGTAGC
AATCATAGCATCTATTTATTCATACGCTGCTGATGTGACGTCCATTGAAG
GACGTACTAAACGAACAGTCATTCTTGAATCTATGATGTTTCTTGGTGGT
GTCGTTTCAAGTGCAATCAGTGGTATCTTATTACAGAAATATGGTTTCAT
ACCAACTTTCCTACTGGTATTAGCAATGTTTGCTTTTCAAATGATTTATT
GGtgttttttacaagaatcaTATCCACCAAGGCCTGACCAACCGAAGATT
TCATTTTGTCAGATCTTGAAAGGTGAGCATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12221MSTRG.12221Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12221.1.p1MSTRG.12221.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12221.1.p1.exon1MSTRG.12221.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12221.1.p1.exon2MSTRG.12221.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12221.1.p1.exon3MSTRG.12221.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12221.1.p1.exon4MSTRG.12221.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091_pilongenomesc0000091_pilon:776882..784928 +