MSTRG.12218.1.p1 (mRNA) -

Overview
NameMSTRG.12218.1.p1
Unique NameMSTRG.12218.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000091_pilon:722534..727829-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12218.1.p1 ID=MSTRG.12218.1.p1|Name=MSTRG.12218.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5296bp|location=Sequence derived from alignment at sc0000091_pilon:722534..727829- (Clytia hemisphaerica_ch_hm2_pilon)
CTTAAACTGTTCACGTGACTTAAAGGGCGGTTTTTAAAAGCAATATTTTT
TTGAGATGGTCAGTCATCGACAGCTACTTATAAAGAAAGGTTCGAAGAAT
TGTTGAATAACAAATTTTACAGGCAAATTACATTTCCTATTTTGTCATAA
AATTTTTGATTTTTATCTAATCAAAAAATGGCTGGTCCCTTATCGAAAGG
TCACGCAACTGGAACTCTCGTCTTAGGCGTCTGTGAGTTATTATGTGGAA
TTTTGGTGATCATTTTGGCCATCGTTGCAGCAAACAAAGCTGATTTAGCT
GCTGGTTTATCACCATGGTGGGCTGGTGTTGTGGTGAGTTTATCTTCCTA
AGAGATTGGATAACTTTGTCTCCCATATGAAAACTGAAGTTTGAACAAAA
TTTAAGTAGGGTTGCCTTAAAAAATGGATTAAAAAACTGTAAATACTTCT
GTCCTCAAAAGCTCATAATTATCTCGACAAACTTGTACATTTTTCTGGCC
AGTCTGGTAAAAGGCACCTTTTTCACAGACCCGATAGAACTGAATATAAT
AGACTGAAACTCGGTGCGGATTGGAATGTCCATGTTTTTTTATGGTGAGC
ATTTGAATTCCATTGCTTTCGAAGTGAAAAATTCAGGGTGGATGGAAAAA
TAGCACATTATTTTGAAGTAAGGATTTGTTTATTTGATTATTTTCAGCGC
CGGGGACAAAAATTAGAATATAGTTTTCCACTGGGGACGATATTTTGGTC
AAATTTTCCAGGGAGAAGGGGGTTCCACAGGGTCAGTCAGTGAGAAGAGG
GTGTTGGAATCCATTTTCTGTTTAAAATATTGACAATTTCCTTTTTACAG
CAAAATATCATATCAAGAATAAAGCTTTTAAAGCATTAGATCTTATCTAA
GTTTTTGGTTTTTCTAAAAAAGCGATGCATTGTGAGATTGTTTCGGGAGT
ATTACAATAGAATTCCCTCGAGGAATTCCTGAGAGATTTCTATTGTAGTA
ATCCCGTAACAATCCCACAATACATCGCTTTTTTCGAAAAATCAAAAACT
TCGATAAGGTCTTTTATAGTCAAATTAAAGTAATGTTTTTTACTGCTAAC
CCTGCTAGGAAAAAAAATTATTCTTGAAGCTAAAACTTTTATCATAACAG
TATGACTAATTCAAAAAATAGGTTTATTAAATTAAACTCTAGTGCGAGTT
TTAAGTTGAGCTTCATCGACAAAGCTATTTTGATTTAAAACTCTTTCATG
GTATGTGATAAATGTGCAGTAAATGAAAAGATTAAAAGCTTTATAAAAAC
TCAAATAATGAAATTCTTTTAATAATTCTTTTATAAGAATATGGTGTAAA
TCCATTTCATCATGGATATTCTTAACTTTTTTGGGAAAATCAGCATAAAA
TATTCTTATGGCATTCTTAGGTTAGGATCTTAATTCAGACTAGATTTAAC
ATTTAGTACATACCTCTAAAGCATAAAATGGCATTTTTGTGAAAGGAGTA
AGCCTTACTTGGGGGTAATTGGCGACTAATAATAGAAAATGTTCTAAAAA
TGGCATTCTTAGCTTGAGTAGGAAAATTCCATGATGGTGATATTCTTAGC
ATTATTCTTAACCTTTTGACCATTTTCATCATGGACATTCTTATAAAAAA
AACGTGCAAAAAAATTCCGTTCTCTTTACCATGCCAGGAGTCATTGGAAT
TATCGATGTTAATTTAGCAGCAAGCAGGATGGGCCTTTACAATTACCATG
ATAATATTGTTCAAGTAATAATTAAAAAGCCATTAGATTGACGTCTTTTG
CCTTCTCTTGTATGTATGAATATGTCAGGCTACATGTATGAACATACTCG
ACTTTTCTCAGAGACACTGAGTGTATGAATTTCTAAGCATCTTGTATAAA
CTTTTAAATTGGCTTGAAACGAAATCTGATATATACATGACACTGAATCA
GAGTTTTTCAATAACTTGAATAACTAAAAGTTTCCCCTACTTCTCCAGAA
AGAACCCTACGACGACCACAACAAATGAAAATCGTAATTTGAAACCTTTT
TTCAATGTGGAAAATTCTACAAAGCAGAACACTTCTCTCCTTTGAGAATA
ACCTTCATAAGAATACTGTATCAGGTTCAATTCTGGCAAAACTCTAGAAC
AAATCAAGATCAATCCCAAAACCTCATACATACTCTGAAGAGCTAGACAC
GACCACGACGTCAGCATGATTACGAGCTTCATAGGAACTTTGCTAATGAC
GGTATGAGAGGCTACCAAAGCAACTCTCTTTTTTACAGAAGTGTGAAACC
TTGGAATGATCTCGAAGAAGATATTGTTGAAGCACTATCCTTAAAAGTCT
TAAAATGTAAAATCAAATATTCGAAATATTTTGCTATAAAAAAAAAACAA
GAAACAGCAAAGAAAATGATAATTTTGATCCCTTTTAAATAAGTGAATAA
AAGTATATTAAGAACACTTTTAGGAGCATTTAGATCTTGCATCACAAAAA
ATAAGAACACCGAGCCTTAGTCAAAACTTACTGCAGCTCTTATGAAAAAA
AGTGTTGTGCTTTTCACAAAGACTATTGTTTGTCCTTGTTATCTGCATTC
TAATTGGAGTTCGTACACGTTTTTTATAGCGGCAAACTACATAAGAGCAT
AAGACTTCGATAGCTAAAATATCAGAAACTTTCTTTCTTAGGAAAATGGA
AAAAAAGACTCACGAAATGGTGAAAATAAGAACATGTTTAATACATTTTT
AGGGTTAAAACTCAAAAAGTTAAGAATATCCAAAGCCTTCAAAAATGTTT
ATTTTTCATTTTAGTTTGCCATCCCAGGAATCATTGGAATCGTAGTGGGT
GTGACAAAAAATCATTGTGCAGTAAGTGGGAATTAAATATTTGTTTTATC
ATATTATCAACTTCTGTCCAAACTAAATTTAAAATTATATTATTGAATTC
TGATCATAATTAGATTTTATACCATTCCATTTCCATTTAAGAATATATTG
TTACACCCATTGAACCTTAAAATATGGTAAATCTTTACATTTTGACTAAA
TAAAAAGTCACATCTTAATGATCTTAATTTTTTTTCTCCATTTCATAAGA
TTTTTCAAATTTTAATTTGTTTAGATGATTGCATTTATGGTGTTGAACAT
CATCGCATTCATTTTGCAAGGAGTTGGAGCCATCTTGGCTGGTATTGTTA
TTGCCCTCTGGTCATCTGCCGCCGCCGATGTAACCGATAAATGTAGGCAA
TCCGCTTATAATGAATGCACATGCAGAACGGACGATGGAACCGATTTCAC
CATCAGAGGTTTGGATAATTGTGATGAGATTTCTTCTCTCTTTTCCACTA
TCACTGCAATGTTGGTTTTCTTGATCATTGCAGCTATCATTGCTCTAGGT
GGATCAATCTTGGGATGTATTGCCGTTTGCTGCACCAATGTAAGTAAAAT
TAACTTTCCCATGACTGGGAAAAAGAAATTACCCGAGTGAAGGGGAAAGC
GAGTTATACTTTCTCACAACTAGTAACTTAGTGATTTGAGTCTCTGTAGA
TGGAAAAACCATGTAGGTCGCTCTTTCTGTAACTCGAATCTCTATCTATG
AATCGAATTTCTACATACAACTCATTTTGTTAGTTACAGCTCGAATTCGC
TAGCTACAACTCGAATTTCTATATACAACTCGAATTTGCTATCTACAACT
CGGCTTTCTAGTTACAACTCAAATCGCTAGCTACAAACTGAATCCTTAGG
TGAAACGAAACTTAAATCTTAACGGTCCTTAAATCTCTTCTTTATCGAGA
TCTTTTACATCTATAACCCGAATAATAATATGTAGCTCGAAGTTGTCTTT
AATTTTCATTTCACTTTAATTTATAAAGTTGTTATCAAAATTCTCTGTAA
TTAACGTGTAAAACTGTACAACGTCTTTATTAATCTTTCGGTCATGAACT
CGTATCTTTCTAAAGAGCCAAAGTCAAAATTCATCCCAACTGGGTTATCC
CGCATATTGGGTGCAGCACTTCTACTATATATCTTGAACCTATTATATTT
TGTAATTACTAAGTCATTTCTTTGCTCTTTGTCCTTTTTAGAACCAGCCA
CAAGGAGGTGTTGTCTATCAAACTCAACAACCACCTGCGTACTCTGTCCA
ACAAACCACCACTGTTAAACAGTGATGGTTGAATTTCACTCAAGATCATT
TTTTTGGTTACCATATTATTTCTAACATATTATTTTTGATAAACCGTAAA
ACGTTTTTGTATTGTAAACATTTGACTACATTTTTTGATTTAATGGTATT
TGTAAAATAGCGCTATATATGTAACCTTGTAAATTCCTGATCACCTCTAC
CTTAAGTAGTGTGTGACAATTTCACGAATGAATGAATACCTTAAAAGGGA
AAATTAAAAAGGGAAAGACCTTATCACTTTTGTAAAAATTTTTGTCACAA
CTTCCTTAAAGTTGATCAGAAAGATTTTCCGCCGGGGAAAACTCCGTCAC
TAGCCTTAAAATATCGGTCACTTTTCCACGACAAATTTTTCCCTTTTAAG
GTTTGGTTTATTGATGATTTAATCTTGACATATTGAGATCTTTAACAAGA
TGCTTGCCAAAATTTTCATTTCCCTCAGTTTATTTCATATCTTTTTGTAC
ATATTTACAATGTGCTCATGTGTTCATTTTTAAGGGAACGTTCCAAAATT
TATCCCGTCCCACTTCAAAGACATTTAATCCTATTCAGATATTATATAAT
TTTTTGAATGATTGATTTAATTTGTTGAATGGGGAAGACCAAAATACATG
AAAATTACTAAAACATGAACTAAAAATTGGTGATTTTTTCAAATAAATTT
TCTTTTTGACAACTTCGGAGATGATTTAGAATTTTCTTTACTTGTAGTAG
TATTTCTCTTGTAACGTAACACAGGTCAACCCTCATGAATTTGAATATTT
TAAAAGAGTCGACATTTAACGTGGATAGCCCAGTAATGTAAGGCTTTGAA
GACTTTTAGGTAGTCTTTCGATTGTTTTCACGGGGTCCACAGCCAGCCGG
CTTGTCTATCTTTGAACTAAACGGAACATTGGAAGGAGCGGGAATTCGAA
CCGGGAACAATTGTTTGAGGCGCCGATGGCTTGACCATTCGATCCTTAAA
AACATTTTAAAGACGTTTTTAAAGACTTTTAAACACATTTGAGGAAATAA
GAATTAAATAGTTTATCCACTAATTACAGTAAAAGAAACTTAGTCAAGGT
GGAAAGATTTTCTCCAAAGAATTATCTTCATAAAAACAAAGACTAG

Coding sequence (CDS) from alignment at sc0000091_pilon:722534..727829-

>MSTRG.12218.1.p1 ID=MSTRG.12218.1.p1|Name=MSTRG.12218.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2448bp|location=Sequence derived from alignment at sc0000091_pilon:722534..727829- (Clytia hemisphaerica_ch_hm2_pilon)
AACCAGCCACAAGGAGGTGTTGTCTATCAAACTCAACAACCACCTGCGTA
CTCTGTCCAACAAACCACCACTGTTAAACAGTGAATGATTGCATTTATGG
TGTTGAACATCATCGCATTCATTTTGCAAGGAGTTGGAGCCATCTTGGCT
GGTATTGTTATTGCCCTCTGGTCATCTGCCGCCGCCGATGTAACCGATAA
ATGTAGGCAATCCGCTTATAATGAATGCACATGCAGAACGGACGATGGAA
CCGATTTCACCATCAGAGGTTTGGATAATTGTGATGAGATTTCTTCTCTC
TTTTCCACTATCACTGCAATGTTGGTTTTCTTGATCATTGCAGCTATCAT
TGCTCTAGGTGGATCAATCTTGGGATGTATTGCCGTTTGCTGCACCAATT
TTGCCATCCCAGGAATCATTGGAATCGTAGTGGGTGTGACAAAAAATCAT
TGTGCAATGGCTGGTCCCTTATCGAAAGGTCACGCAACTGGAACTCTCGT
CTTAGGCGTCTGTGAGTTATTATGTGGAATTTTGGTGATCATTTTGGCCA
TCGTTGCAGCAAACAAAGCTGATTTAGCTGCTGGTTTATCACCATGGTGG
GCTGGTGTTGTGAACCAGCCACAAGGAGGTGTTGTCTATCAAACTCAACA
ACCACCTGCGTACTCTGTCCAACAAACCACCACTGTTAAACAGTGAATGA
TTGCATTTATGGTGTTGAACATCATCGCATTCATTTTGCAAGGAGTTGGA
GCCATCTTGGCTGGTATTGTTATTGCCCTCTGGTCATCTGCCGCCGCCGA
TGTAACCGATAAATGTAGGCAATCCGCTTATAATGAATGCACATGCAGAA
CGGACGATGGAACCGATTTCACCATCAGAGGTTTGGATAATTGTGATGAG
ATTTCTTCTCTCTTTTCCACTATCACTGCAATGTTGGTTTTCTTGATCAT
TGCAGCTATCATTGCTCTAGGTGGATCAATCTTGGGATGTATTGCCGTTT
GCTGCACCAATTTTGCCATCCCAGGAATCATTGGAATCGTAGTGGGTGTG
ACAAAAAATCATTGTGCAATGGCTGGTCCCTTATCGAAAGGTCACGCAAC
TGGAACTCTCGTCTTAGGCGTCTGTGAGTTATTATGTGGAATTTTGGTGA
TCATTTTGGCCATCGTTGCAGCAAACAAAGCTGATTTAGCTGCTGGTTTA
TCACCATGGTGGGCTGGTGTTGTGAACCAGCCACAAGGAGGTGTTGTCTA
TCAAACTCAACAACCACCTGCGTACTCTGTCCAACAAACCACCACTGTTA
AACAGTGAATGATTGCATTTATGGTGTTGAACATCATCGCATTCATTTTG
CAAGGAGTTGGAGCCATCTTGGCTGGTATTGTTATTGCCCTCTGGTCATC
TGCCGCCGCCGATGTAACCGATAAATGTAGGCAATCCGCTTATAATGAAT
GCACATGCAGAACGGACGATGGAACCGATTTCACCATCAGAGGTTTGGAT
AATTGTGATGAGATTTCTTCTCTCTTTTCCACTATCACTGCAATGTTGGT
TTTCTTGATCATTGCAGCTATCATTGCTCTAGGTGGATCAATCTTGGGAT
GTATTGCCGTTTGCTGCACCAATTTTGCCATCCCAGGAATCATTGGAATC
GTAGTGGGTGTGACAAAAAATCATTGTGCAATGGCTGGTCCCTTATCGAA
AGGTCACGCAACTGGAACTCTCGTCTTAGGCGTCTGTGAGTTATTATGTG
GAATTTTGGTGATCATTTTGGCCATCGTTGCAGCAAACAAAGCTGATTTA
GCTGCTGGTTTATCACCATGGTGGGCTGGTGTTGTGAACCAGCCACAAGG
AGGTGTTGTCTATCAAACTCAACAACCACCTGCGTACTCTGTCCAACAAA
CCACCACTGTTAAACAGTGAATGATTGCATTTATGGTGTTGAACATCATC
GCATTCATTTTGCAAGGAGTTGGAGCCATCTTGGCTGGTATTGTTATTGC
CCTCTGGTCATCTGCCGCCGCCGATGTAACCGATAAATGTAGGCAATCCG
CTTATAATGAATGCACATGCAGAACGGACGATGGAACCGATTTCACCATC
AGAGGTTTGGATAATTGTGATGAGATTTCTTCTCTCTTTTCCACTATCAC
TGCAATGTTGGTTTTCTTGATCATTGCAGCTATCATTGCTCTAGGTGGAT
CAATCTTGGGATGTATTGCCGTTTGCTGCACCAATTTTGCCATCCCAGGA
ATCATTGGAATCGTAGTGGGTGTGACAAAAAATCATTGTGCAATGGCTGG
TCCCTTATCGAAAGGTCACGCAACTGGAACTCTCGTCTTAGGCGTCTGTG
AGTTATTATGTGGAATTTTGGTGATCATTTTGGCCATCGTTGCAGCAAAC
AAAGCTGATTTAGCTGCTGGTTTATCACCATGGTGGGCTGGTGTTGTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12218MSTRG.12218Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12218.1.p1MSTRG.12218.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12218.1.p1.exon4MSTRG.12218.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12218.1.p1.exon3MSTRG.12218.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12218.1.p1.exon2MSTRG.12218.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12218.1.p1.exon1MSTRG.12218.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091_pilongenomesc0000091_pilon:722534..727829 -