MSTRG.12215.1.p1 (mRNA) -

Overview
NameMSTRG.12215.1.p1
Unique NameMSTRG.12215.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000091_pilon:699902..703314+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12215.1.p1 ID=MSTRG.12215.1.p1|Name=MSTRG.12215.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3413bp|location=Sequence derived from alignment at sc0000091_pilon:699902..703314+ (Clytia hemisphaerica_ch_hm2_pilon)
aaaagcaaGGCGGCTTTGattgttttggctgaacaaccaggtcagataTC
ACAATAGCCATATTCCTTTAGAGCAGAGTATGGTTTGCGCAGAATGAATA
AAAGCAACCTTTTATTTGTTTAATTCAATATAAATGACTTATTTATCAAA
ATGAATGACtattaattagatttttttatcaaaatatcttATATTTGAAT
TATTTCCCAGgcttaaaaagtaaaaataagcAAACAACACATCAATCACA
TAATTCAACATGTACGACGGTGATGGTGACTCAACAATGGAACCAACAAC
AGAAAATACAACAACTCTGGAAAAATACCCATGTTTTGTCAAAATTGCCG
AAGATGAAACActagaaaatttcattgaattacCAACTGAAAAATGTGGT
AGTATGCTGTTATCTACTATTCAAGGACAATACCCAAATGCTATTGGTTT
GAAGTATAAAAGTCCTTCAGGATCATGGAGAGGAGTACGATTATCAGAAA
GCATGCTTGATCCACCTTTTGAAGGTTGGGGAGAAGCCGTCTATTCCATC
ACACTACCAAAATCAGAGAAAGGTTAGATGTTTATTCATGTAGTTCTTTG
TTCCtttttttCAGGAATATTTCTAATCCCTaccctttttttcaaaaata
cagaaACATATTCGATGATACGATGTAGAGGTTGTTGATTTGAAACAGAC
TTAGTTGTAATTTAAATTGATATCATTATCGTATCAATGTGAAACATGAA
ATCTTAGTGTGATTTTTAGAGTAGTGGGTagtcaaagaaaatttctttat
ccAAATTTTAACAGGCTGCAAACCATGGGATGAAGCATTTGTAGGAAAAG
GGGTCCCAACCAAGAAGACTACTTATACTTTCATACTCTCTTGAAGGACA
AGACAAAAGAGCTTATCTTTAAAACCTCGTATTGCGTCCGTCGTTATTTT
TAGGCTTTTATTGAAACTCACAATTTCTTCTGTTTTAGACACCGGGAAAC
GTAAAATGGTGGAGGAGTCGCCCAGTAGAGAGCCAGAGGCTAAATTAGTC
AAGACTggatctgaaaatgaatatctCTCAGATTTGATTGTTTTGGGTTT
ACCTTACAAAGCACGAGAAGACAACGTGAAAGATTATTTTCAGCAGTTTG
GTGAGTTGGCTATGCACGaggtaaataaataaattcataataccaaaatt
acaaaaaacattTACTTTATTAAATCGTTGTTTTTCGAATTATCACATTG
TTAATGTCGACAACCACTTTATTTTTAAGGTAACTTGAATCTTTACTAAA
CTGAATACTAAAGGAATGGTACCTGAATCTAAAACATTAAAACCAAACGG
TTCTGATATCAAAGTCCAGTTTCATCGTTctgattgttttcttttctttt
ttaagatcAAGTATGACCCAGTAACAAAGCAATCACGTGGGTTTGCTTTC
ATTCGTTTCAAGACAGTAGCTGCAGCACAGAAAGCTCTCAAAACAACTCA
CACCATCCTTGGTCGTAGGTGTGAAGTCAGATTACCGAAGAAAAAGGTAT
TGTAGTTTGAACTAATTTACaatgaatttttaaacttttttttttctgca
agCATGTTGGAAATGTATCAAATATTAAGCAGAttttcaataggtaaaag
ttggctattgaaaatttattaaccTGAGGCGATGTATTCAACGACGCGAA
GTGGAGTATTGACTAATAAGCAGTATCACGAATCGAAAATACGAAATAAA
TTAGACTAAAACAAGAACCTCTTAAGCCAATAGTTATTGGCTGGTTAAAG
TTTTCAAACACAGTAATGGTTTATTTGTGGGTTTGAATTTGTAGCTTTTG
TGTCCTCTTTGTATAGGCTGCAATAAGTGAAACCAACAGTTTTCAACTGG
ATCAATAGACGGTAAATCAATTCTTTACCaatttgtttttcatgttttgt
taagttacgtaacttccaccattatggaagcaaacgttcgaatctttaAA
GGCGATCcattacgcaaatcgaacgctTGGTTCCATAATGCCGGAAATTA
TGTAACttaacaaaaacatgaaaaacctcttcCAGTTTAAgtaaaaatat
cgattttttgtttcttcaggAAGAAGTTCCCTTACGTAAATTGTTCATTG
GACGATTACCAGATGACACCAAGCAAGAAGACCTTGATAGTTATTTCGGA
CAGTTCGGAGAGTTGACGGACGTCTATATACCGACGCCATACCGAAGTTT
TGGATTTGTGACGTTCGCTTCTTCAGATGTTGCCAGGACGGTGCTTTTAC
AAAGTCAACACACGTTAAAAGTAAAAGCTTCCTCTTTTGCGCTCggttgt
cgttctttttagggTCTTAAAGTGAAGAGGGTGACAATAACGAAGATTTA
GAATTCTCTCCACCTGGCTGAGttttttttCCAACCTATGAAGAATTTCC
TATCCTATTGTAGAAGTTTtaacagttttttcaaattatagcTGTGCATG
AATAGCTCTAGCTCTGCTCGAAGTATTTTTGAACACTTTTTGTATTAAAC
CCCTTTTATTTCATCGCAATCATATTCACTCCTCACGTTTGTTTCAATCA
AGGGTCAACGTATAAACGTGACAAATGCTGAACCAAAAGACGAAAAGGGT
GGAAAATCCTCACGTAGCGGCCGCGGCAATTCGCGCTCGTCCTCGCGGCG
CCATCACGAGCATTCGTTCGATTTCAAAGACATGCGAGAACTGATGTACA
ACTCTAGATCCGGTCTACAATATCAACATGGGTCATCGAGGCGTTCTCCG
CCACGTGAGGTTCTTGATCAAAGACCAAGTATCCCGTACACTACTCACCC
AGCAGCGACCAACCCTTACCAACCGAATGACTATAGGACGCTTCAAGCAG
GTGGATACGGAGCACCACCAGATATGAGACCGGCATACCCACCTACTGGA
CAGCAGCAACAATTTGACTCTCGCGAGATGCAATATGGTGCTTACTGGAG
TACTAGCAAGTAATTTGAGGTATGAATAACTCTTGATAATTTTAGCTAGA
TCAAGTAATTTGAGGTATGAATAAGTACCCTTTTGTTAGTAAATTCTAAA
ATTACTATTTCTGAGATTTGTGTGTTGTTTGAAATTATAATGAGTACTAC
AAACAATTCCGAATAATTAAGTATTTAATATAATAatgatttatgtaaaa
attttGTGTGCGTGTTTTTGTTTCAGTGACGTGTGCAGACTGTGTCCAGA
GGATGCGAAATTTGTGTGAAATAATGGTGATTGATCGAGTGGTGAACCGA
GTTATTATTTAGCGAGTTGATCCGAGTGGAACCGAGTTGCGAGGGgaaca
tttattttttataaaagaaaagcaacttttctctttactttttttaattt
gctttaCAACCAA

Coding sequence (CDS) from alignment at sc0000091_pilon:699902..703314+

>MSTRG.12215.1.p1 ID=MSTRG.12215.1.p1|Name=MSTRG.12215.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6240bp|location=Sequence derived from alignment at sc0000091_pilon:699902..703314+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTACGACGGTGATGGTGACTCAACAATGGAACCAACAACAGAAAATAC
AACAACTCTGGAAAAATACCCATGTTTTGTCAAAATTGCCGAAGATGAAA
CActagaaaatttcattgaattacCAACTGAAAAATGTGGTAGTATGCTG
TTATCTACTATTCAAGGACAATACCCAAATGCTATTGGTTTGAAGTATAA
AAGTCCTTCAGGATCATGGAGAGGAGTACGATTATCAGAAAGCATGCTTG
ATCCACCTTTTGAAGGTTGGGGAGAAGCCGTCTATTCCATCACACTACCA
AAATCAGAGAAAGACACCGGGAAACGTAAAATGGTGGAGGAGTCGCCCAG
TAGAGAGCCAGAGGCTAAATTAGTCAAGACTggatctgaaaatgaatatc
tCTCAGATTTGATTGTTTTGGGTTTACCTTACAAAGCACGAGAAGACAAC
GTGAAAGATTATTTTCAGCAGTTTGGTGAGTTGGCTATGCACGagatcAA
GTATGACCCAGTAACAAAGCAATCACGTGGGTTTGCTTTCATTCGTTTCA
AGACAGTAGCTGCAGCACAGAAAGCTCTCAAAACAACTCACACCATCCTT
GGTCGTAGGTGTGAAGTCAGATTACCGAAGAAAAAGgAAGAAGTTCCCTT
ACGTAAATTGTTCATTGGACGATTACCAGATGACACCAAGCAAGAAGACC
TTGATAGTTATTTCGGACAGTTCGGAGAGTTGACGGACGTCTATATACCG
ACGCCATACCGAAGTTTTGGATTTGTGACGTTCGCTTCTTCAGATGTTGC
CAGGACGGTGCTTTTACAAAGTCAACACACGTTAAAAGGTCAACGTATAA
ACGTGACAAATGCTGAACCAAAAGACGAAAAGGGTGGAAAATCCTCACGT
AGCGGCCGCGGCAATTCGCGCTCGTCCTCGCGGCGCCATCACGAGCATTC
GTTCGATTTCAAAGACATGCGAGAACTGATGTACAACTCTAGATCCGGTC
TACAATATCAACATGGGTCATCGAGGCGTTCTCCGCCACGTGAGGTTCTT
GATCAAAGACCAAGTATCCCGTACACTACTCACCCAGCAGCGACCAACCC
TTACCAACCGAATGACTATAGGACGCTTCAAGCAGGTGGATACGGAGCAC
CACCAGATATGAGACCGGCATACCCACCTACTGGACAGCAGCAACAATTT
GACTCTCGCGAGATGCAATATGGTGCTTACTGGAGTACTAGCAAGTAAAT
GTACGACGGTGATGGTGACTCAACAATGGAACCAACAACAGAAAATACAA
CAACTCTGGAAAAATACCCATGTTTTGTCAAAATTGCCGAAGATGAAACA
ctagaaaatttcattgaattacCAACTGAAAAATGTGGTAGTATGCTGTT
ATCTACTATTCAAGGACAATACCCAAATGCTATTGGTTTGAAGTATAAAA
GTCCTTCAGGATCATGGAGAGGAGTACGATTATCAGAAAGCATGCTTGAT
CCACCTTTTGAAGGTTGGGGAGAAGCCGTCTATTCCATCACACTACCAAA
ATCAGAGAAAGACACCGGGAAACGTAAAATGGTGGAGGAGTCGCCCAGTA
GAGAGCCAGAGGCTAAATTAGTCAAGACTggatctgaaaatgaatatctC
TCAGATTTGATTGTTTTGGGTTTACCTTACAAAGCACGAGAAGACAACGT
GAAAGATTATTTTCAGCAGTTTGGTGAGTTGGCTATGCACGagatcAAGT
ATGACCCAGTAACAAAGCAATCACGTGGGTTTGCTTTCATTCGTTTCAAG
ACAGTAGCTGCAGCACAGAAAGCTCTCAAAACAACTCACACCATCCTTGG
TCGTAGGTGTGAAGTCAGATTACCGAAGAAAAAGgAAGAAGTTCCCTTAC
GTAAATTGTTCATTGGACGATTACCAGATGACACCAAGCAAGAAGACCTT
GATAGTTATTTCGGACAGTTCGGAGAGTTGACGGACGTCTATATACCGAC
GCCATACCGAAGTTTTGGATTTGTGACGTTCGCTTCTTCAGATGTTGCCA
GGACGGTGCTTTTACAAAGTCAACACACGTTAAAAGGTCAACGTATAAAC
GTGACAAATGCTGAACCAAAAGACGAAAAGGGTGGAAAATCCTCACGTAG
CGGCCGCGGCAATTCGCGCTCGTCCTCGCGGCGCCATCACGAGCATTCGT
TCGATTTCAAAGACATGCGAGAACTGATGTACAACTCTAGATCCGGTCTA
CAATATCAACATGGGTCATCGAGGCGTTCTCCGCCACGTGAGGTTCTTGA
TCAAAGACCAAGTATCCCGTACACTACTCACCCAGCAGCGACCAACCCTT
ACCAACCGAATGACTATAGGACGCTTCAAGCAGGTGGATACGGAGCACCA
CCAGATATGAGACCGGCATACCCACCTACTGGACAGCAGCAACAATTTGA
CTCTCGCGAGATGCAATATGGTGCTTACTGGAGTACTAGCAAGTAAATGT
ACGACGGTGATGGTGACTCAACAATGGAACCAACAACAGAAAATACAACA
ACTCTGGAAAAATACCCATGTTTTGTCAAAATTGCCGAAGATGAAACAct
agaaaatttcattgaattacCAACTGAAAAATGTGGTAGTATGCTGTTAT
CTACTATTCAAGGACAATACCCAAATGCTATTGGTTTGAAGTATAAAAGT
CCTTCAGGATCATGGAGAGGAGTACGATTATCAGAAAGCATGCTTGATCC
ACCTTTTGAAGGTTGGGGAGAAGCCGTCTATTCCATCACACTACCAAAAT
CAGAGAAAGACACCGGGAAACGTAAAATGGTGGAGGAGTCGCCCAGTAGA
GAGCCAGAGGCTAAATTAGTCAAGACTggatctgaaaatgaatatctCTC
AGATTTGATTGTTTTGGGTTTACCTTACAAAGCACGAGAAGACAACGTGA
AAGATTATTTTCAGCAGTTTGGTGAGTTGGCTATGCACGagatcAAGTAT
GACCCAGTAACAAAGCAATCACGTGGGTTTGCTTTCATTCGTTTCAAGAC
AGTAGCTGCAGCACAGAAAGCTCTCAAAACAACTCACACCATCCTTGGTC
GTAGGTGTGAAGTCAGATTACCGAAGAAAAAGgAAGAAGTTCCCTTACGT
AAATTGTTCATTGGACGATTACCAGATGACACCAAGCAAGAAGACCTTGA
TAGTTATTTCGGACAGTTCGGAGAGTTGACGGACGTCTATATACCGACGC
CATACCGAAGTTTTGGATTTGTGACGTTCGCTTCTTCAGATGTTGCCAGG
ACGGTGCTTTTACAAAGTCAACACACGTTAAAAGGTCAACGTATAAACGT
GACAAATGCTGAACCAAAAGACGAAAAGGGTGGAAAATCCTCACGTAGCG
GCCGCGGCAATTCGCGCTCGTCCTCGCGGCGCCATCACGAGCATTCGTTC
GATTTCAAAGACATGCGAGAACTGATGTACAACTCTAGATCCGGTCTACA
ATATCAACATGGGTCATCGAGGCGTTCTCCGCCACGTGAGGTTCTTGATC
AAAGACCAAGTATCCCGTACACTACTCACCCAGCAGCGACCAACCCTTAC
CAACCGAATGACTATAGGACGCTTCAAGCAGGTGGATACGGAGCACCACC
AGATATGAGACCGGCATACCCACCTACTGGACAGCAGCAACAATTTGACT
CTCGCGAGATGCAATATGGTGCTTACTGGAGTACTAGCAAGTAAATGTAC
GACGGTGATGGTGACTCAACAATGGAACCAACAACAGAAAATACAACAAC
TCTGGAAAAATACCCATGTTTTGTCAAAATTGCCGAAGATGAAACActag
aaaatttcattgaattacCAACTGAAAAATGTGGTAGTATGCTGTTATCT
ACTATTCAAGGACAATACCCAAATGCTATTGGTTTGAAGTATAAAAGTCC
TTCAGGATCATGGAGAGGAGTACGATTATCAGAAAGCATGCTTGATCCAC
CTTTTGAAGGTTGGGGAGAAGCCGTCTATTCCATCACACTACCAAAATCA
GAGAAAGACACCGGGAAACGTAAAATGGTGGAGGAGTCGCCCAGTAGAGA
GCCAGAGGCTAAATTAGTCAAGACTggatctgaaaatgaatatctCTCAG
ATTTGATTGTTTTGGGTTTACCTTACAAAGCACGAGAAGACAACGTGAAA
GATTATTTTCAGCAGTTTGGTGAGTTGGCTATGCACGagatcAAGTATGA
CCCAGTAACAAAGCAATCACGTGGGTTTGCTTTCATTCGTTTCAAGACAG
TAGCTGCAGCACAGAAAGCTCTCAAAACAACTCACACCATCCTTGGTCGT
AGGTGTGAAGTCAGATTACCGAAGAAAAAGgAAGAAGTTCCCTTACGTAA
ATTGTTCATTGGACGATTACCAGATGACACCAAGCAAGAAGACCTTGATA
GTTATTTCGGACAGTTCGGAGAGTTGACGGACGTCTATATACCGACGCCA
TACCGAAGTTTTGGATTTGTGACGTTCGCTTCTTCAGATGTTGCCAGGAC
GGTGCTTTTACAAAGTCAACACACGTTAAAAGGTCAACGTATAAACGTGA
CAAATGCTGAACCAAAAGACGAAAAGGGTGGAAAATCCTCACGTAGCGGC
CGCGGCAATTCGCGCTCGTCCTCGCGGCGCCATCACGAGCATTCGTTCGA
TTTCAAAGACATGCGAGAACTGATGTACAACTCTAGATCCGGTCTACAAT
ATCAACATGGGTCATCGAGGCGTTCTCCGCCACGTGAGGTTCTTGATCAA
AGACCAAGTATCCCGTACACTACTCACCCAGCAGCGACCAACCCTTACCA
ACCGAATGACTATAGGACGCTTCAAGCAGGTGGATACGGAGCACCACCAG
ATATGAGACCGGCATACCCACCTACTGGACAGCAGCAACAATTTGACTCT
CGCGAGATGCAATATGGTGCTTACTGGAGTACTAGCAAGTAAATGTACGA
CGGTGATGGTGACTCAACAATGGAACCAACAACAGAAAATACAACAACTC
TGGAAAAATACCCATGTTTTGTCAAAATTGCCGAAGATGAAACActagaa
aatttcattgaattacCAACTGAAAAATGTGGTAGTATGCTGTTATCTAC
TATTCAAGGACAATACCCAAATGCTATTGGTTTGAAGTATAAAAGTCCTT
CAGGATCATGGAGAGGAGTACGATTATCAGAAAGCATGCTTGATCCACCT
TTTGAAGGTTGGGGAGAAGCCGTCTATTCCATCACACTACCAAAATCAGA
GAAAGACACCGGGAAACGTAAAATGGTGGAGGAGTCGCCCAGTAGAGAGC
CAGAGGCTAAATTAGTCAAGACTggatctgaaaatgaatatctCTCAGAT
TTGATTGTTTTGGGTTTACCTTACAAAGCACGAGAAGACAACGTGAAAGA
TTATTTTCAGCAGTTTGGTGAGTTGGCTATGCACGagatcAAGTATGACC
CAGTAACAAAGCAATCACGTGGGTTTGCTTTCATTCGTTTCAAGACAGTA
GCTGCAGCACAGAAAGCTCTCAAAACAACTCACACCATCCTTGGTCGTAG
GTGTGAAGTCAGATTACCGAAGAAAAAGgAAGAAGTTCCCTTACGTAAAT
TGTTCATTGGACGATTACCAGATGACACCAAGCAAGAAGACCTTGATAGT
TATTTCGGACAGTTCGGAGAGTTGACGGACGTCTATATACCGACGCCATA
CCGAAGTTTTGGATTTGTGACGTTCGCTTCTTCAGATGTTGCCAGGACGG
TGCTTTTACAAAGTCAACACACGTTAAAAGGTCAACGTATAAACGTGACA
AATGCTGAACCAAAAGACGAAAAGGGTGGAAAATCCTCACGTAGCGGCCG
CGGCAATTCGCGCTCGTCCTCGCGGCGCCATCACGAGCATTCGTTCGATT
TCAAAGACATGCGAGAACTGATGTACAACTCTAGATCCGGTCTACAATAT
CAACATGGGTCATCGAGGCGTTCTCCGCCACGTGAGGTTCTTGATCAAAG
ACCAAGTATCCCGTACACTACTCACCCAGCAGCGACCAACCCTTACCAAC
CGAATGACTATAGGACGCTTCAAGCAGGTGGATACGGAGCACCACCAGAT
ATGAGACCGGCATACCCACCTACTGGACAGCAGCAACAATTTGACTCTCG
CGAGATGCAATATGGTGCTTACTGGAGTACTAGCAAGTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12215MSTRG.12215Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12215.1.p1MSTRG.12215.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12215.1.p1.exon1MSTRG.12215.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12215.1.p1.exon2MSTRG.12215.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12215.1.p1.exon3MSTRG.12215.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12215.1.p1.exon4MSTRG.12215.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12215.1.p1.exon5MSTRG.12215.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12215.1.p1.exon6MSTRG.12215.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091_pilongenomesc0000091_pilon:699902..703314 +