MSTRG.12206.1.p2 (mRNA) -

Overview
NameMSTRG.12206.1.p2
Unique NameMSTRG.12206.1.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000091_pilon:556252..562290+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12206.1.p2 ID=MSTRG.12206.1.p2|Name=MSTRG.12206.1.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6039bp|location=Sequence derived from alignment at sc0000091_pilon:556252..562290+ (Clytia hemisphaerica_ch_hm2_pilon)
ATTTTCCagaaactaaataaataaatagagaAAAATGTTATGTAGAAATA
AATTGGGATTAACTTGTCGTGCGCATGCGCGTATGATATCTACGTCATGT
TGTCGAATGAGACGGAAGCCGAAACCTGAACGTGACATGTCCAAACGGAA
TTTACAAGGCGAGGCATTGGAGGAAAGGTTAAAACGAAGAGAAGCTGACA
TTATTCGGCAACAGGTATTAGCAGCCTTCTTATCCCTCACTATTTAGCTT
CCATGACATTCAAAGAAAAGTGGTTTTTCATATTTGGAGACgatatttgt
ttcaaaatgtttcaGCCTATCAAGGAAATGTTTATTGTGCATAACTTGGA
TATACAAAACGCTGTCTCACAGCCTGGTAGAAGTTCTAGTGTTTTGAGTT
CAAAAACGCCAATGGGGATGGTTGTGGAGTGCAATTtatttacattgaat
tttgaatgggggtGAAAAGTCAATTACCATGGAGCTGAAtttgtagggta
ttttcccaccagggaTGAAATTAGGCCAAATTTTCCCGTAGGTTTGGGTt
tccactgggtctgtgacacaggggtgtataataGGTTGGGGACTGCAAAT
TAATAACCCTTTAATTAATCAAGGGATCAGTGGTGTAATGGTCGTTGCTC
TTGACTCCCGTCTGAGAAGTCCGAGTTCAATGCTCACCGTATTACCCTGA
TTCACTTAGCAAATGAAAGAACTTctttcgcccgggtcaaccaaTACCAT
GTGAGGGAATTCGGGTACCCCTACCCCTACCTAGACAAGAGTGTGGATTC
CAGGTATTGTGACATGCGATCTATCAATAACTTAAGAGCCAATTTTTTAT
CCATAGCCATACAAAGAAGCAGTAGCGCGTGTGGTACATCGTTTCACACA
AGAGATCGAATCGGAAGAACGGAAGAAACACGACGTTCAAGGTGAACTCG
TGCAAAGAGAGTTGGCTGAACGTCAGCAAGCTCTACAAAATCTCGCCATA
CTCTCCAAAAGCAATGaagaattgaaattaaaaaggtatttttgagtatt
ttttatgaattagATTCGGGTGGTTTTATTGTGGTGATTCTTTTCACATA
CGAGAGGAGGGACGAAAAGGGACAACATGGCACGAGTTATTGAAAGAATA
TTACGTATAACTTCAGtgctttttgatttattttaaacaaaagataTTGT
GATTTCTCACCAATCCAAACCTACGCCCTTTCTTTGACTACTTTGAAGGA
ATTTTCTCGTAACCCCCTATGCCTGCCTAGGCTTGATGATTATGTTCTCG
GATATAAATCGTTCATTCACTACAACCCCTACACTTTTTATTGAATTACG
CTGATCCCAGCTTATGTCAAAGAACAAGGtctctttttctaaatattCCA
GATTTTTCTTTCTGGTATTTATATGAATCTCATACCATTTCAATTTCTTA
TATTACTTGAAACAAGAACTAGTAGTTCTGAAAATTCCAACAATAAGTTA
ACGTTGGTTTAAATTTGTTGATTTCCAGGGAGAAGCAAAGTTTGTTAGAC
GAAGAGAAACTTCGTTTacaagaaagagaagaagaaacaagaCTAGAGCA
ATTAAAAGCAGAAATCAAAGAACGAAACACCAATATCGTACTAAGAGTAA
TCGTGAGTAGATTGCCCTTTTTtgtttcccctcaatttttttttgccccT
TTCTTTATCTGTAAGGGCTAACTGAATTAGGGGAAATTATCCCTGTTTCT
TTGgacaaatatttcaatatttttgtggGAAACTTGAAGCTTTTGTTTGC
TATATTTGGGACCCAATTTAGTCTGTGATTTCATAGCTACTATGTTTTGA
GCAACCTTTGGTCCAAGTAGTCTTCAATTGTATTATATGGTACTGCCCtc
ccttttttataaaatgggGTAGGAGTTGAAGCCATCTACTAAATAAAAGG
GCTCCTAAACATCTTTTTAacagtttcttataaaattctccCAGAAACAA
TATTAGGAGTAGTACTCACActagagtctgctaaattgcgtgggttgcgt
gggtgcgtgggtacgtgggtcgatatttttgcgttggtcatttttttgcg
tgggtgcgtgggtcaaaatattttttgcgtgggtcaaaaattttgcgtgg
gtcaaattttttgcgtgggtcatattttttgcgtgggtcaaattttttgc
gtgggtcaaattttttgcgttcatattttttgcgtgggccattatttttt
gcgtgggtcaaaatttttgtgtgggtcaaaattctctctgtaattcgaaa
aaatgccttcccttgaaattcgaacgggtcacatccaaaatgttggatgt
gttTTACATAGcacgttttggtttattttgtttattttgcatagcTGTAC
AGTTCCGTACTTTCTGAATAACAATATGGTGAATTAGTTCCAATAAACGA
GGTCGGAAAGAACTTTTCCAACAAAGGAGTGTTGTTTTATAAGAGGAAGc
tttataaaatctttttggaAGCTTTATAGCTTCTTATAGCACGCTTTAAT
CTTTTGGGTTTCCTTTGAGTGTTAAAGAACAAAGCAAATGgcgacaaaat
ctgaaaatttttctacaaaagttaTATTCATTAGGCGACCGATTATTAAA
CAATTTAATCGTTGTCAATTATTTCGTCCACCccacttgtaatttctttg
atttaagtacattaaaggccaatttaaaaaattggacgaaataaagacgc
tgtactttttttcaaagcaagagaaaagggaggaaaaaattccatagaaa
gaaaagaagcggtcatatctcatttttttgcttaaagttatagtgtttat
ttccatgacactggaatcctgaaatatagcatgctaaaattcaaaagtgt
gatCCTGAAGTGTGTCTACAAAAATTAGACGGGTGTGTGTTGATTCTGTA
TAATGTTATAGTAAGTAAGTGCAGCTATGTAAAATAAACCACAAGGTGTT
ACTACATAAAAATTGTGTGCCTTTGTTTAGTTTATAGTAGATATATACAC
AACACATTTGTGTATaagataacttgaaaatttaaatttgacaaaaaaaa
cgtcttagctaactcgaaagttttaatttggtaaaaaaatcgagttagct
aaaaaatcaccaaaaaaatagtgactcactcaaaaattttgacccacgca
aaaaatattacccacgcaaaaaataataacccacgcaaaaaaatatgacc
cacgcaaaaaatatgacccacgcaaaaaatttgacccacgcaaaaaaaat
tgacccacgcaaaaaatttgacccacgcaaaaaatattttgacccacgca
cccacgcaaaaaaatgacccacgccaAAATAttaacccacgcaaaaatat
tgacccacgcacccacgcaacccacgcaatttagcagactcctcACACTA
GACAGCGCTTGCCAACACATGGTATTTGTTCATTATATTAGAGGTGTTTA
TTCATGACGTAACATTTTGAGGTGTCAATTTTTATGGCAAGGTCGAAATT
TTCCAactcataattttattttcaaacaattCCAAATTGCTGCCATATTA
TGGTGTTGACGAGTGTCTCCGTTGTTTAAAACTTTAAGTCATTATACTGG
AGTTGTGCACTGAATGATTTGTTGATTTCATTGATTTGTTGAGTCATTTG
AAGgactttttttgaaatcgttTTAAAAATGACCTTTGCAcaccaattta
aaaaaagtcttgaTCCTGTCAtcattgattttgatatgtaaTCTGTAACT
TGTTTGTAAAGTTTCTTTACAAGGGCTTGTCTTTTGAGCTTTACCGGATC
TTTAACCTCTTGATAGTTTCTCAATCAAATGAAACACCTCTGCGTTTCTT
TCTCAATGTTTCATTATTTCGAGGGATGAGAAAGAAAACTTTATAAGAGA
TATTATTTTGTCGGATGGTCGAGATATCCTGCAGGCAGATGGTAATTAAT
GAAACATTGTGTCTCTCATTCAACCAACAATATCATGAAGTGTTTTCACG
TAATGGATcacgaaaaaataaaactaaGATATATCTTTGACCTCGCCAAA
ACAACTCCTACTTAAATTAAAAAGCTCAACAATAAAAACCACAATGTATT
GACTTGCTTTGAATACTAAATTTTGCCGGAAAATCATTTTAAGTCGATGG
TTGcacaaattaaaaatatatttacgtaatataaaaactttaaattttga
taaaaatacttttatggAATGACTTAAATGTTAAGAAAAACTTAGGATAA
TGATATAGGAGAGCTAGGCTGTCTATTTCAGATTTAATTAAGCACCAGAT
TCTTTGTGGAATTGCGTAAAATTGTCATGTCTATTTGTGGTTTTTTGTGa
ttgttcattagtttttccggGTTGAAAGGAGGGGCCTGAAATTGGACCAT
TTTAATGGTTAATTCTTTTCTTTCCAATATCATCTTCAGGAGGAAAGCAA
GTCGTTCGTTACCAAAGAAAACCTCGATCAAAAAATCGAAGAAGCACTCG
AAAATCCTGTTAACTACAATTTCGCTTTGAAAACCAACGGTGAAAAGATT
ATTTCTACTAAACCACCTGGTAATTTGGACGGGTGGAAGGGCGCCAATCC
AAGTGCGTACGCCCTGGGTGGAATACAACAAGGAAGCGGTGAgtggaatt
tcatttttcgatcaCAAAAACCACAACAAGAAGAAAGTCAAGataattaa
tattttttataagataatGAATGATAGAAATGTACATACTGTTTTGcaag
aaaaatattaagaaaatataTCTCAAATGAAATATCTGAAATAACATGTC
ATTTCTTCTGAAATTGAGTAACAGTAATTCTTTGTTGGGTAACATTCTCT
TGTGTTGAGATTGAACTTCTATGAATTACCATTGGTTGCACTGTATTACG
CATGCGTGAACTACGTTTCGAAAAATTACTATTCAGTGAACTTTTTGAGG
GTTGAAAAATTCTTGAGAAAGCTTTTCGGAATCGTTTTTGTTGTAGAAAA
TAGATGAATGGGTTAAATGAACTTTTCGAAAATGAAGCCCATTTTGATGC
CACACTTAATGTCATTGAGATGCTTTCCAGATGGTCTGTGTTTTGTTCTT
TCAACTCCAAAATACGTAAACATGCGTATGGTAGATGACAAATAACGAAA
GCTCCAATAACGAATAATATTTTACTAGCTGTTCGAATTTCACGTTGACG
AAAACTTTCATGTCTTGATTTTTGATTCATGTTGAATATATTCACTGGTA
GTATAGCACGTGCAATCCTTCGATTGTGTGAGCGTGCAACACGAAAAATG
TACAAATAAGTCGCTAAAATCACGCACAAAGATAGCAAGAAATTGCATGA
AATCAGGAAAGCCGTATAAATATAAAATCCAGTTTCTTCACTGTATGAAT
AAAAAGTACATGCTAAGTATCTTTGATTGAATGTATACCAGTTGCAAAAG
ACTGGGACTAGAGAGAAAACAATAGATTGCACCCAGATGTAAATGTTACA
TTGCGACGCTTTACAAATTGTCATCCTAGCTTTATAAGCTAGTGGTTTCA
TCACAGCGGCTAGTCGGTCTAGACTGATAACTGCTAATGCTAACATCGAG
GCCAGTTCAACAGACGTTCCCATAAATCCGTTTAGTTTTTGTAATGCAAC
GGGTGGTCTCCAAGACGCTGATACTATGGCAACGAACGAAAAAGGCATGA
CGAATACAAGGTTTGTAAGATCGATAATCAATAAATTAATCAAAAAGATA
CTAGCGATGTTTCTTCGTAATTGTCTTTCCTTTACTAATACACACAACAC
AACAATATTAGCTAGCGTACCAATCAAAATGATGGCTCCCAAAAATACTG
CAAAAATGATCTGGTTACTCGTCTGTAACTTCATCTTCACCAGATAAGAA
TATAtcttcagtttttctttttattgataatCTCAAAACACCAAGACATC
AGTCTAGAATATTTGTTCTCGTACtaataaaaatttaac

Coding sequence (CDS) from alignment at sc0000091_pilon:556252..562290+

>MSTRG.12206.1.p2 ID=MSTRG.12206.1.p2|Name=MSTRG.12206.1.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2976bp|location=Sequence derived from alignment at sc0000091_pilon:556252..562290+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTATGTAGAAATAAATTGGGATTAACTTGTCGTGCGCATGCGCGTAT
GATATCTACGTCATGTTGTCGAATGAGACGGAAGCCGAAACCTGAACGTG
ACATGTCCAAACGGAATTTACAAGGCGAGGCATTGGAGGAAAGGTTAAAA
CGAAGAGAAGCTGACATTATTCGGCAACAGCCATACAAAGAAGCAGTAGC
GCGTGTGGTACATCGTTTCACACAAGAGATCGAATCGGAAGAACGGAAGA
AACACGACGTTCAAGGTGAACTCGTGCAAAGAGAGTTGGCTGAACGTCAG
CAAGCTCTACAAAATCTCGCCATACTCTCCAAAAGCAATGaagaattgaa
attaaaaagGGAGAAGCAAAGTTTGTTAGACGAAGAGAAACTTCGTTTac
aagaaagagaagaagaaacaagaCTAGAGCAATTAAAAGCAGAAATCAAA
GAACGAAACACCAATATCGTACTAAGAGTAATCGAGGAAAGCAAGTCGTT
CGTTACCAAAGAAAACCTCGATCAAAAAATCGAAGAAGCACTCGAAAATC
CTGTTAACTACAATTTCGCTTTGAAAACCAACGGTGAAAAGATTATTTCT
ACTAAACCACCTGGTAATTTGGACGGGTGGAAGGGCGCCAATCCAAGTGC
GTACGCCCTGGGTGGAATACAACAAGGAAGCGGTGAgtggaatttcattt
ttcgatcaCAAAAACCACAACAAGAAGAAAGTCAAGataattaaATGTTA
TGTAGAAATAAATTGGGATTAACTTGTCGTGCGCATGCGCGTATGATATC
TACGTCATGTTGTCGAATGAGACGGAAGCCGAAACCTGAACGTGACATGT
CCAAACGGAATTTACAAGGCGAGGCATTGGAGGAAAGGTTAAAACGAAGA
GAAGCTGACATTATTCGGCAACAGCCATACAAAGAAGCAGTAGCGCGTGT
GGTACATCGTTTCACACAAGAGATCGAATCGGAAGAACGGAAGAAACACG
ACGTTCAAGGTGAACTCGTGCAAAGAGAGTTGGCTGAACGTCAGCAAGCT
CTACAAAATCTCGCCATACTCTCCAAAAGCAATGaagaattgaaattaaa
aagGGAGAAGCAAAGTTTGTTAGACGAAGAGAAACTTCGTTTacaagaaa
gagaagaagaaacaagaCTAGAGCAATTAAAAGCAGAAATCAAAGAACGA
AACACCAATATCGTACTAAGAGTAATCGAGGAAAGCAAGTCGTTCGTTAC
CAAAGAAAACCTCGATCAAAAAATCGAAGAAGCACTCGAAAATCCTGTTA
ACTACAATTTCGCTTTGAAAACCAACGGTGAAAAGATTATTTCTACTAAA
CCACCTGGTAATTTGGACGGGTGGAAGGGCGCCAATCCAAGTGCGTACGC
CCTGGGTGGAATACAACAAGGAAGCGGTGAgtggaatttcatttttcgat
caCAAAAACCACAACAAGAAGAAAGTCAAGataattaaATGTTATGTAGA
AATAAATTGGGATTAACTTGTCGTGCGCATGCGCGTATGATATCTACGTC
ATGTTGTCGAATGAGACGGAAGCCGAAACCTGAACGTGACATGTCCAAAC
GGAATTTACAAGGCGAGGCATTGGAGGAAAGGTTAAAACGAAGAGAAGCT
GACATTATTCGGCAACAGCCATACAAAGAAGCAGTAGCGCGTGTGGTACA
TCGTTTCACACAAGAGATCGAATCGGAAGAACGGAAGAAACACGACGTTC
AAGGTGAACTCGTGCAAAGAGAGTTGGCTGAACGTCAGCAAGCTCTACAA
AATCTCGCCATACTCTCCAAAAGCAATGaagaattgaaattaaaaagGGA
GAAGCAAAGTTTGTTAGACGAAGAGAAACTTCGTTTacaagaaagagaag
aagaaacaagaCTAGAGCAATTAAAAGCAGAAATCAAAGAACGAAACACC
AATATCGTACTAAGAGTAATCGAGGAAAGCAAGTCGTTCGTTACCAAAGA
AAACCTCGATCAAAAAATCGAAGAAGCACTCGAAAATCCTGTTAACTACA
ATTTCGCTTTGAAAACCAACGGTGAAAAGATTATTTCTACTAAACCACCT
GGTAATTTGGACGGGTGGAAGGGCGCCAATCCAAGTGCGTACGCCCTGGG
TGGAATACAACAAGGAAGCGGTGAgtggaatttcatttttcgatcaCAAA
AACCACAACAAGAAGAAAGTCAAGataattaaATGTTATGTAGAAATAAA
TTGGGATTAACTTGTCGTGCGCATGCGCGTATGATATCTACGTCATGTTG
TCGAATGAGACGGAAGCCGAAACCTGAACGTGACATGTCCAAACGGAATT
TACAAGGCGAGGCATTGGAGGAAAGGTTAAAACGAAGAGAAGCTGACATT
ATTCGGCAACAGCCATACAAAGAAGCAGTAGCGCGTGTGGTACATCGTTT
CACACAAGAGATCGAATCGGAAGAACGGAAGAAACACGACGTTCAAGGTG
AACTCGTGCAAAGAGAGTTGGCTGAACGTCAGCAAGCTCTACAAAATCTC
GCCATACTCTCCAAAAGCAATGaagaattgaaattaaaaagGGAGAAGCA
AAGTTTGTTAGACGAAGAGAAACTTCGTTTacaagaaagagaagaagaaa
caagaCTAGAGCAATTAAAAGCAGAAATCAAAGAACGAAACACCAATATC
GTACTAAGAGTAATCGAGGAAAGCAAGTCGTTCGTTACCAAAGAAAACCT
CGATCAAAAAATCGAAGAAGCACTCGAAAATCCTGTTAACTACAATTTCG
CTTTGAAAACCAACGGTGAAAAGATTATTTCTACTAAACCACCTGGTAAT
TTGGACGGGTGGAAGGGCGCCAATCCAAGTGCGTACGCCCTGGGTGGAAT
ACAACAAGGAAGCGGTGAgtggaatttcatttttcgatcaCAAAAACCAC
AACAAGAAGAAAGTCAAGataattaa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12206MSTRG.12206Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12206.1.p2MSTRG.12206.1.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12206.1.p2.exon1MSTRG.12206.1.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12206.1.p2.exon2MSTRG.12206.1.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12206.1.p2.exon3MSTRG.12206.1.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12206.1.p2.exon4MSTRG.12206.1.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091_pilongenomesc0000091_pilon:556252..562290 +