|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000090_pilon:1235939..1243037+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.12166.2.p1 ID=MSTRG.12166.2.p1|Name=MSTRG.12166.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7099bp|location=Sequence derived from alignment at sc0000090_pilon:1235939..1243037+ (Clytia hemisphaerica_ch_hm2_pilon)
cttttttcaagcaagaaatAAACCAAAAATGAGGATTGGACTCCAACATT
TGCCCCTGGCGACTGTAATCCTTTCACCCTTCATAGTTTCATACAATGGA
TATGGTTTATTCATGACAACATTCACAATGCTTTTATGctttttgattta
ctttgtCACCAATTATTACTTGACTTTGTGAGtattagtttttttcattt
tgtgttttttgagaTAAAAAGATTCAACAATggtataattttcattttta
taatataataaaaatgataCAAATGTTGCATCTGTTTTATCTCAAAATTG
TTCACTTGCaacaatgttttgtttttggccAATTACTTTGTTGTTCTTTC
TAGAAAACTTTCTTGAAGACTTTTCGAAGTTCTATTGTTCTATAacataa
ataaatctattgttttTCAAGCCAAGACCCTACCCTCATTTTGTTCATGT
ATTTAAGTACAATAAATAAGTAAGAAAAGATCGAAGTGTGTAAAGATCGA
ATTTGATGTTTACCTCAAGTGGATTAATTTACGCAAGGATTATATTTTCG
taagtttttctaaaaatttgcgaaatttaatgctcgtgaaaattttgaaa
ccagGGTTTTTGCCAATTACGCTAGTTATTTTGCTAAAATCCcgaggaaa
atgaaagaaatgagtTTAAAAAGGGGTCAATTCAAGAAAGTAAATCCCAT
TATTagttagattttttttgaaaaaaaatgtctcgCAAAAAATATCTgct
tgtgaaaatttaaaatccacTTGAAACGTATCTCATGGaagctaaaataa
aatttgttctCTATGTTGcagatatttatttttctaatccAAAAAATGCA
TGAACTGGGAATAATTTGACCATCTATCACTTTCAGTAAAAGAGTTGGAG
CAAAGGAAGATCGTATTGTTTTGAATACGTTTCCTATATCTCACTATGTG
GAAAAAGCAAGATGGTGTTTAGATAAATCAGGTACTTTTTATTATGTTTA
agttatttgatgaaaattaagATCTTTCAATTTAAATCActgcttttcaa
aaattcttgcTTGTATATAATTCTTAACTGTTTCTTGAACTGTTTCAATT
TATCTGTTTATTGGACTGTTCTattaaaaatccatacagggggtggacaa
acctttttcgaatccaaaacaaacttggaaatgtgtggatgCCCCCTCCT
GGAATCTAGATGGGAAAGTTTGCAATGAAACCCTTGGAAAAACACTCCTT
ATgaacccctggaaattcttcccAGATTAACCCTTGGAAGTATTCGTcca
cccctgtatggatataaaatggaaaggTCCGAAGTGGTCCAAATAGAACT
TGACATAAAAAGTAtttcttcattcgtttttgTTTAAGTATTTTTCGATT
GAAATAACCTGTTTTGGACATTATCCTTTAGGCATTCCTTATACTGAAGA
AAAGGACATTGGAGTCTTTTGGTTCATACTGACTGGACGAATGTTACCAA
CTCTTCGAAATGAAACTCAAAGTCAGTATTTTGTTACTCTCTCGATTTTC
ttgttcaatttttatttaaggGACCTTTGatattagcgagattatgtatc
gaaaatattctacggctacggtcgCGGGGCTGTCCATATGGGTCGccacc
aaaggcgacatgtcgttgtctactttgctctgtacggaaaaaaacactaa
aactgtataagcaaagtcgacataatgccgtacgtcaaatatgaAACTTG
CGTTCACCCGCGATTAATttccttactcgccatttccctcgtcacattaa
ccgtagccgtagagaattcgaGATGGATAAACTCGCTATATTCTTCGCCA
ACACGTAGTCCAAAAGTGTATAACAACATTCATTTTCTATTTGGAAATCC
TGTTGGGTTAATGTCTCTAAcaactacaatcaaggtcataatatttgaga
aaaagttaTTCGCctggaagttttgaaaccacaatcgatttgtaagtgct
ctaaagtaatttagaagggtagagttttaactctgagttttaacgctagg
cTTAGATagaaccttaggatctgaggatccaaaagttcaaaaatagtcta
acgaggctcagaatatatagtctggaagtctgccaacccatcCCATTAGA
TTCGTGAATAGATTCTTTTTCAACAACTTTCtttaattgtaaattttttg
aatgaCTATTTAGTATTAGAAATTTGTGGCACAGGAAATTTAATATTATT
ACTTTTTCGTTTGCAGCAAATGCTGGGTCGGTtgcgcccgtagaacaaca
aatcaaattggtctcacctaaattgttttttaaatattgatatCAGTATA
TTTTAGTTTCCTGTTAAggtcgctacccactcagcattttatgttCGGCG
AGCATGGCGCACGGCTCGAGCGTTTTGGTCGCTAAACGCTTTTCTCATTC
CACTGATCCAAAATAAAGGGGAGATATGCtgcaaatgttttcttttttca
tttgttgaaaTTCTTTTGCACACGGTACAAGAAAGTTAAATGTCTATCCT
GGTTGGCTAATTCAAAAAGAACGATATGGAGCTGCACAGCCTAGCgaaaa
aggttgaaaagtttcaactcttgttgAGCTCAAAGCGAAACCTTTGAAGG
CTTGgtttatgtaatttatgcaataattaagccgtgcgccttgttcgccg
accataaaaaaccgagtttatgtatcggaggatatcgagggcaacggtaa
gtgaaatcgatacaaaacaaagtcgatagtggACGTACGGCTTTATATCG
cttttgctcacctaaacagacgacggaattttggtgtttttaccgtcgtc
gagcaaagtggacgatGATTtaggagacatgtcaactttgctttatataG
TCCCCCTctatttatctcgaatacataaactcgctaatgctgagtgggta
gcgaccTTTAaaggatttattttttatttttcagatatcACTATTCCCAA
CACGTCCGATATTTGTAAATACTTGTACGGACACACGGTACAAACGCAAG
GGGAAGAAAAAGCAGAGTTTCTGAAACCTTCCACTAAAGGATTTGAATTA
GAGAAGAAGATTGATCGAATCGGTTTGTTGTTGAGAAGATATGCTTATTA
tcatgtaagaatattttttttttttgacgctctcttattcagGTTTTTTG
TTAACGATAACTTTCACTATTAAGGCCGGACTCCATTTTCGCGCGAAacg
ggcgacagtttttttctcaacttttttttgcatgaagaaaagattacgtc
ataaaaaagtttcgcgcaaacaaaaaaaaagttgaaggaagttctacttt
tttcatcagttacgtcaatttctaccaatggaattgcttaatttttcaac
cgaccaatgaccttacaaaaacgtcaaaaagttttcgctcatgtcgtgcg
aaagtggagaccggaaTTAAAGCGCGAAAAATCAATCGAGGTTCAAGGAA
ACGGTtgacaaatacaataatgaccgctTTTttagggctgtactgagaaa
tattaccctcggtcaacgcaacaacctcgcaaaccggtcattattgtgtT
AATGGAGCGTATCAATTagaagaacgtcgaattagagagcggcAACGCAC
TACAATACTAGTTTgagcagaggaatgtaaagagatggaaaaacagcttc
ttgaaaacaatggaaaaacggctcgtcatataccaggtctcttgccctta
agggagtttatgtcgagtaaataggtttcttttgttttcgctataaaaaa
tctgcataattagcgtgttgtgacaaaattcttttgtttcaagcctgatt
atgcgcaaacttttaaggcttatattttgggtacacctctcctatacgaa
aaggtacctatatcttcttgctcagaatttcctagcgattctactgatat
aactgcatcatgaccgcaccataatatggaaagctagagctcgagaaaat
tataacttcatcttgattttactcgacttctgacagttttacaagaagcA
ATTTAatatatcattgcgttaaggatttcttttgttatacattggtaaaa
atattgctccttattcttaaaaattggactagtaatcggcaaaaaaggaa
aaacaaattttcatttttatcgtcaaataatgtagaaaccgtccgatttt
tATGGCGACGGctgtcttttctggactttcatttaatgggcttttccaga
acaaACCGTGCACcacctgttgaggaggtccaaccttttgtgacctaccc
ctatggaattttaggcaattttaggatcatacccctctggaattccgaat
ttttacaaattttcaatcattacccccttggaactccgcttatttttgac
ggattttcgtctacccttatggaattccactgcatttcaaaccttacccc
ctgggtgtgcacgatttttttctgggaaagcccaatgacctaatcaacgt
ttttacaatagaattttcaatagaagtgatcgttgaactttgagtaatca
gaaaagctgtttttccatctctttacattcctctgatgcACTACTGCAAC
GACTttacgaaattatgcaacttttttgtttttgttccacccaatacgtc
actttttctattgtttaagtgacgtattgggtggaaaattttaaaagttc
tcagaagactctccagtggtgcatatcttGAATAAACGTTCTATAAAATT
CTACAATTTAACATATTCTTCGATTTAACATCAACAatatttctgacgtc
aattcaaaataaaaaatcattcgAAAGTCTCAAGGAGACGCACTTTACAG
TATATTATACTCGATTATTTAAAGATCCTACCTTTTTTATACACACGTCC
GATAGATTCAGGCACCATAAGGACCTCTTTAAGAAAATTGCAAGTGAAAC
TTAAGAGTTCAAAAATAAATGCATATAATTTGTCAACCATTTTGATATAT
TGTTTTTAGATGATCGTTGACTACCCTGACAACATGGAGATGATTGCTTT
GAAAGGTTGGGGATTCCATGAGGAGACAGTCCCAAGCTGGCAAAAAATGA
TCCTCAAAATTGTTTGGCCTTTGAATCGAATTTTTGTAATCAATGCCTTa
caaatcaacaaaaagaaTGTCGAGAAAGATCGCAAAAGAATCGATGATTT
TTATCGAGAAATGGATGAAATTTTATCCAACAACAAGTATTTACTTGGCA
CTGATGAGCCAACGTATATTGATATCACTTTTGCTGCTATCACCTCCTTG
ATTGTTTGGCCTAAAGAATACGGTGGCCCACGCTTGACACCTGCTGCAAG
ACTGGAGATAAATGATTTTGGTCCTGAACCTCAAAAACGTATGAATGAGT
TTCGCGAAACTGTGTCTGGTCAATTTGTACTTAGAATGTATCGAGAACAT
CGAATCTGAAAGTGGACCAATGATAAGCATATTCTAGCTTCTTATGCTGc
ttaatagtgaggttaagtaaatcggtaaaatcacgacgacgaacgaaaat
ttaacaggctagtgagtttcaaccaatcaaatttcgtatttccactagcc
tattacatttttcgtccgtcgtcgtgattatcccggtatacttaacctca
ctaatagcTCTTATATCATGTATATTCAAGCATATTCTAGCTTTTTAAGC
TGCTTTATAACTTTTATAtcatgtaatttttttcttagaatGTATTGAGA
ACGTCGAATCTGAAAGCAGGCCAATGAAAAGCATATTCTAGCTTCTTAAT
AACTCTTATatcatgtacacgtttttttataagaaaaaactatataagaa
cataaggcttcgatgaccaaaatgttaagaacaagttaagaacattttaa
ggctttggggactctaaaatacccaatttcttaggatggaaaaaaatgct
caaaaacggtgaaaataagaatatgttaagaacatttttaggcttaacac
taaaaaagttaagaccatcaaaggcttcaaaaatttaggatgttcttata
aaaaaaagaggtGCTGTATATCATGTAATTTGTACTTTAAAATGTATGAA
AAACAGAACACCAATTTTGAATTACCTTAATTTGATTATGAAATCtgaag
gccggtctccactttcgctcgaaatgagcgaaaactgtttttgtaaggtc
attgttCGGTTTAAAAACGAAGCAATTTCATTGGGCAAATCTGACGTGAc
ggtttgaaaaagttgaacttctttCAACGTTTCATTTTTTCGCTCGAAAC
TTGTttaatgacgtaattttttctGTAGGTAAATACGATTGACAACAAAA
AATGGAGCGAAAGTGAAGATCGGCCCTAAATTTTGAGTATGCGAAAAAAG
TGATTTATAGTTTTCAGATGAACGCATATTTGATTATATTTGCGACATTC
TGGCTTTTCATTTAGTCTTCAATGATTTTTATAGAGCTCCCCTCAaaata
agcggagtgaaatgcGATGGCCATGGAAGTGGTCAAAGGCGACAGCGttt
caaaccagggattcgcaGTTCGAATTCCCGCTGCTTccaatttttgttaa
attcatAGTAATCTAAAAATCCTAGATTATTGGGCTGAGCAatatatcga
ctctatctatgcgataaaaaaaaactacattaaaagttgaaaaaggaaCG
AGTAATCTAATCTTGAGAAAGCTAAATTTcaggaaatatcttttggattt
TAACCTTTTGGACGATGCATGGGTGTTGAAGctttttggaagtttttttg
ttttttttgaagttgtttTCTTTGCATCGCAAattattcatttaaaaaaa
aagaaaatgaatgatCCTAAAATAGGGATATCAAAATGTAACcgaattta
aattttaaggtAGAATTTGGCGGTCGTGaatttttgtaataaataaattt
gattttagttttttatcgtttttcgatttaaCCAgttgaatatattttaa
aagcattatagTATCTTAGGaattttaccctttataatttttcatcattt
tagcattttcgaaataatttttaataggataaaatacttttgatttGGG Coding sequence (CDS) from alignment at sc0000090_pilon:1235939..1243037+ >MSTRG.12166.2.p1 ID=MSTRG.12166.2.p1|Name=MSTRG.12166.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4770bp|location=Sequence derived from alignment at sc0000090_pilon:1235939..1243037+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGGATTGGACTCCAACATTTGCCCCTGGCGACTGTAATCCTTTCACC
CTTCATAGTTTCATACAATGGATATGGTTTATTCATGACAACATTCACAA
TGCTTTTATGctttttgatttactttgtCACCAATTATTACTTGACTTTT
AAAAGAGTTGGAGCAAAGGAAGATCGTATTGTTTTGAATACGTTTCCTAT
ATCTCACTATGTGGAAAAAGCAAGATGGTGTTTAGATAAATCAGGCATTC
CTTATACTGAAGAAAAGGACATTGGAGTCTTTTGGTTCATACTGACTGGA
CGAATGTTACCAACTCTTCGAAATGAAACTCAAAatatcACTATTCCCAA
CACGTCCGATATTTGTAAATACTTGTACGGACACACGGTACAAACGCAAG
GGGAAGAAAAAGCAGAGTTTCTGAAACCTTCCACTAAAGGATTTGAATTA
GAGAAGAAGATTGATCGAATCGGTTTGTTGTTGAGAAGATATGCTTATTA
tcatATGATCGTTGACTACCCTGACAACATGGAGATGATTGCTTTGAAAG
GTTGGGGATTCCATGAGGAGACAGTCCCAAGCTGGCAAAAAATGATCCTC
AAAATTGTTTGGCCTTTGAATCGAATTTTTGTAATCAATGCCTTacaaat
caacaaaaagaaTGTCGAGAAAGATCGCAAAAGAATCGATGATTTTTATC
GAGAAATGGATGAAATTTTATCCAACAACAAGTATTTACTTGGCACTGAT
GAGCCAACGTATATTGATATCACTTTTGCTGCTATCACCTCCTTGATTGT
TTGGCCTAAAGAATACGGTGGCCCACGCTTGACACCTGCTGCAAGACTGG
AGATAAATGATTTTGGTCCTGAACCTCAAAAACGTATGAATGAGTTTCGC
GAAACTGTGTCTGGTCAATTTGTACTTAGAATGTATCGAGAACATCGAAT
CTGAATGAGGATTGGACTCCAACATTTGCCCCTGGCGACTGTAATCCTTT
CACCCTTCATAGTTTCATACAATGGATATGGTTTATTCATGACAACATTC
ACAATGCTTTTATGctttttgatttactttgtCACCAATTATTACTTGAC
TTTTAAAAGAGTTGGAGCAAAGGAAGATCGTATTGTTTTGAATACGTTTC
CTATATCTCACTATGTGGAAAAAGCAAGATGGTGTTTAGATAAATCAGGC
ATTCCTTATACTGAAGAAAAGGACATTGGAGTCTTTTGGTTCATACTGAC
TGGACGAATGTTACCAACTCTTCGAAATGAAACTCAAAatatcACTATTC
CCAACACGTCCGATATTTGTAAATACTTGTACGGACACACGGTACAAACG
CAAGGGGAAGAAAAAGCAGAGTTTCTGAAACCTTCCACTAAAGGATTTGA
ATTAGAGAAGAAGATTGATCGAATCGGTTTGTTGTTGAGAAGATATGCTT
ATTAtcatATGATCGTTGACTACCCTGACAACATGGAGATGATTGCTTTG
AAAGGTTGGGGATTCCATGAGGAGACAGTCCCAAGCTGGCAAAAAATGAT
CCTCAAAATTGTTTGGCCTTTGAATCGAATTTTTGTAATCAATGCCTTac
aaatcaacaaaaagaaTGTCGAGAAAGATCGCAAAAGAATCGATGATTTT
TATCGAGAAATGGATGAAATTTTATCCAACAACAAGTATTTACTTGGCAC
TGATGAGCCAACGTATATTGATATCACTTTTGCTGCTATCACCTCCTTGA
TTGTTTGGCCTAAAGAATACGGTGGCCCACGCTTGACACCTGCTGCAAGA
CTGGAGATAAATGATTTTGGTCCTGAACCTCAAAAACGTATGAATGAGTT
TCGCGAAACTGTGTCTGGTCAATTTGTACTTAGAATGTATCGAGAACATC
GAATCTGAATGAGGATTGGACTCCAACATTTGCCCCTGGCGACTGTAATC
CTTTCACCCTTCATAGTTTCATACAATGGATATGGTTTATTCATGACAAC
ATTCACAATGCTTTTATGctttttgatttactttgtCACCAATTATTACT
TGACTTTTAAAAGAGTTGGAGCAAAGGAAGATCGTATTGTTTTGAATACG
TTTCCTATATCTCACTATGTGGAAAAAGCAAGATGGTGTTTAGATAAATC
AGGCATTCCTTATACTGAAGAAAAGGACATTGGAGTCTTTTGGTTCATAC
TGACTGGACGAATGTTACCAACTCTTCGAAATGAAACTCAAAatatcACT
ATTCCCAACACGTCCGATATTTGTAAATACTTGTACGGACACACGGTACA
AACGCAAGGGGAAGAAAAAGCAGAGTTTCTGAAACCTTCCACTAAAGGAT
TTGAATTAGAGAAGAAGATTGATCGAATCGGTTTGTTGTTGAGAAGATAT
GCTTATTAtcatATGATCGTTGACTACCCTGACAACATGGAGATGATTGC
TTTGAAAGGTTGGGGATTCCATGAGGAGACAGTCCCAAGCTGGCAAAAAA
TGATCCTCAAAATTGTTTGGCCTTTGAATCGAATTTTTGTAATCAATGCC
TTacaaatcaacaaaaagaaTGTCGAGAAAGATCGCAAAAGAATCGATGA
TTTTTATCGAGAAATGGATGAAATTTTATCCAACAACAAGTATTTACTTG
GCACTGATGAGCCAACGTATATTGATATCACTTTTGCTGCTATCACCTCC
TTGATTGTTTGGCCTAAAGAATACGGTGGCCCACGCTTGACACCTGCTGC
AAGACTGGAGATAAATGATTTTGGTCCTGAACCTCAAAAACGTATGAATG
AGTTTCGCGAAACTGTGTCTGGTCAATTTGTACTTAGAATGTATCGAGAA
CATCGAATCTGAATGAGGATTGGACTCCAACATTTGCCCCTGGCGACTGT
AATCCTTTCACCCTTCATAGTTTCATACAATGGATATGGTTTATTCATGA
CAACATTCACAATGCTTTTATGctttttgatttactttgtCACCAATTAT
TACTTGACTTTTAAAAGAGTTGGAGCAAAGGAAGATCGTATTGTTTTGAA
TACGTTTCCTATATCTCACTATGTGGAAAAAGCAAGATGGTGTTTAGATA
AATCAGGCATTCCTTATACTGAAGAAAAGGACATTGGAGTCTTTTGGTTC
ATACTGACTGGACGAATGTTACCAACTCTTCGAAATGAAACTCAAAatat
cACTATTCCCAACACGTCCGATATTTGTAAATACTTGTACGGACACACGG
TACAAACGCAAGGGGAAGAAAAAGCAGAGTTTCTGAAACCTTCCACTAAA
GGATTTGAATTAGAGAAGAAGATTGATCGAATCGGTTTGTTGTTGAGAAG
ATATGCTTATTAtcatATGATCGTTGACTACCCTGACAACATGGAGATGA
TTGCTTTGAAAGGTTGGGGATTCCATGAGGAGACAGTCCCAAGCTGGCAA
AAAATGATCCTCAAAATTGTTTGGCCTTTGAATCGAATTTTTGTAATCAA
TGCCTTacaaatcaacaaaaagaaTGTCGAGAAAGATCGCAAAAGAATCG
ATGATTTTTATCGAGAAATGGATGAAATTTTATCCAACAACAAGTATTTA
CTTGGCACTGATGAGCCAACGTATATTGATATCACTTTTGCTGCTATCAC
CTCCTTGATTGTTTGGCCTAAAGAATACGGTGGCCCACGCTTGACACCTG
CTGCAAGACTGGAGATAAATGATTTTGGTCCTGAACCTCAAAAACGTATG
AATGAGTTTCGCGAAACTGTGTCTGGTCAATTTGTACTTAGAATGTATCG
AGAACATCGAATCTGAATGAGGATTGGACTCCAACATTTGCCCCTGGCGA
CTGTAATCCTTTCACCCTTCATAGTTTCATACAATGGATATGGTTTATTC
ATGACAACATTCACAATGCTTTTATGctttttgatttactttgtCACCAA
TTATTACTTGACTTTTAAAAGAGTTGGAGCAAAGGAAGATCGTATTGTTT
TGAATACGTTTCCTATATCTCACTATGTGGAAAAAGCAAGATGGTGTTTA
GATAAATCAGGCATTCCTTATACTGAAGAAAAGGACATTGGAGTCTTTTG
GTTCATACTGACTGGACGAATGTTACCAACTCTTCGAAATGAAACTCAAA
atatcACTATTCCCAACACGTCCGATATTTGTAAATACTTGTACGGACAC
ACGGTACAAACGCAAGGGGAAGAAAAAGCAGAGTTTCTGAAACCTTCCAC
TAAAGGATTTGAATTAGAGAAGAAGATTGATCGAATCGGTTTGTTGTTGA
GAAGATATGCTTATTAtcatATGATCGTTGACTACCCTGACAACATGGAG
ATGATTGCTTTGAAAGGTTGGGGATTCCATGAGGAGACAGTCCCAAGCTG
GCAAAAAATGATCCTCAAAATTGTTTGGCCTTTGAATCGAATTTTTGTAA
TCAATGCCTTacaaatcaacaaaaagaaTGTCGAGAAAGATCGCAAAAGA
ATCGATGATTTTTATCGAGAAATGGATGAAATTTTATCCAACAACAAGTA
TTTACTTGGCACTGATGAGCCAACGTATATTGATATCACTTTTGCTGCTA
TCACCTCCTTGATTGTTTGGCCTAAAGAATACGGTGGCCCACGCTTGACA
CCTGCTGCAAGACTGGAGATAAATGATTTTGGTCCTGAACCTCAAAAACG
TATGAATGAGTTTCGCGAAACTGTGTCTGGTCAATTTGTACTTAGAATGT
ATCGAGAACATCGAATCTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000090_pilon | genome | sc0000090_pilon:1235939..1243037 + |
|
