MSTRG.12162.1.p1 (mRNA) -

Overview


Name	MSTRG.12162.1.p1
Unique Name	MSTRG.12162.1.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000090_pilon:1166795..1169918+
coding sequence from alignment at sc0000090_pilon:1166795..1169918+

mRNA from alignment at sc0000090_pilon:1166795..1169918+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.12162.1.p1 ID=MSTRG.12162.1.p1|Name=MSTRG.12162.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3124bp|location=Sequence derived from alignment at sc0000090_pilon:1166795..1169918+ (Clytia hemisphaerica_ch_hm2_pilon)
aaaaatattttttcagtcAGTAATTCCGCTTTGATGATGGAgtcattaaa
atatttcttgtactATGCACTTATTCTAATCTTCTACAACGAGAGTGTTT
GCAGTCAACAACGACACATGTTTTCACCGAATATTCGTTACCAAGGCTCT
CACGGCAACGCGTCATTCAACTATAGTTATATCAATCTCAAATATCTGAA
AGGATATAAATTGGATATTGCACCTTTGGCAACATACAACGTCCATAACA
AATCACAATGCGCCaaagaatgcctaaaaactaaagGTGATTGCAAGAGT
ACAAATCTCCGAGAAATGAGCGCTGGATTTGAATGTGAAATCCTTGGGGA
AGACATTTACACATCTGACTTTCGATTGGTAGAAGACAGCTCCATAACAC
ATTTTATTATAGCCGTAAGTTCTTTAACCTCTAACCACCCCCGCCCCCTT
ATTAAACACGATTAATTGTCCCCAATGGGAGAAACATCCCGGAATTTCGT
CTCCTTTGCCTACTTTGCAGGCCCGTTAgaacaaccgttaaagtggggag
actgaaggctcaaaatgagataaatttTCTAGTAATTCTGAAATCTCATT
TGATCAAAATCTCCCCAGTCTCCACACTTCCGCTGGGCCTGTTTTGATAT
CTTTGAAACGTGTCGTTTCCTTCTGTTTCTTTAGAATAAGTGCTTACAGA
ATCCATGCAGACGAGGATCCAAATGTGTTCCCATTTATCAGAACAATAGT
TATTATTGTGCAAGtgagtacacgctttttttttataagaatggtgtaag
ggggggAGTTGagcttttacggtgtgacggtataacttttttaggaaaat
cattattagatttaacatttagtacatacgtcttaagcctaaaatggcat
ttttgggaaaggagtgagccttacttgggggtaattgacaatttatagtt
gaaaatgctctaaaaatggcattcttagcttgagtagaaAGTTCCAagat
gatattcttagcattattcttgaatttttggccattttcatcatggacat
ttttataaagtgtattcttattaaaataaAGCGTGttacacgatttttta
taagaacatccaggaTTTTTGAAGCGGTCGgattattttactttttgagt
tttaagcccaaaatgttcttagaatgttcttattttcacgtaGATTGGAG
AGCTTTTGCATGAAtttttttAcgcatttatgacgttctaagattgaaga
atttgtGTTACAAAAATTGAGTACGAGGCAAGtaatgttcgtaacgtaat
ttatgaaaaggtctatttctctttttttagatTCGAGCTGTAGAATAATG
AAGAAAATTGAGCCTCGTTTATCTACTGGTTATTATGATGTGTTAATTGC
TGGAAAATGGAGAAAAGTCTTTTGTGATATGGACGAAGACGGGGGTATGA
CATTTCTTATTCAAATCAAGCCTGGCGGAAATAGAGAAGCTGGGGTGGGG
TTAAAGCCTCCCCACTTTTTAGCATAATAGACTTTTTTCTCTAATTCCTG
GCgaatttatctcattttgagcctttagCCCCATctacttttacggttgt
tccacaATAATCTACTTCAATCATGTCCCTTAAAACGACCCTTTGTCACA
TCACAGATCCAAAGGAAGTTTATTTTGAGAtaccggcgtaaaaggggcta
TTTCATCTGATTTCATACGATTTGCGTATCTGTTATGCTATATCTAAAGG
GAAAAAATGCACAAATCTGCGCATATTTCCTTTCAAGAAAGACATTGAAA
AAATGCCAtcattcaccaaaattcaagAGCTCTTGTCGTTGTCTTTGTAA
AtcttatatctcaattcacaaaagagtgctcaaCCATAAATAGTTGATTA
CTTCAGTGATGTAGAAAAATTTCATGTactaaaaacacccccttctcaca
gacccggtaggattttttcagccagtagggataaaaataacagattgaaa
ctcgatggagattgatattaGCGGAAATATCTAActaaacgacgtttgat
agcttgaacggtcaacttgattttctttatgatgaaacatatagatgaac
ccatagtctgcggccgggtcagaaaatttttctttctaaCCCGgtcggtt
tccggaaacactacatttgttTACTTTCGCCTCATAACAAAGTAAACTCA
TTTAATCATCTTAGGTGGTTGGATGTTGGTCGGAAATTACTCAGTCCCAT
CAACACAAGTTGGACCGGAAATCAATTACGGTGATCTAGATTCATTCGCA
GAGCTTTCCACTGGAAACTTTCTTCTTGATTCGAACATCTATCTTCCCGT
CATCGATTCTTCATCACCAATCAATGAATTCAGATTCAACTGTTACAAAC
CGTCAACGAATAGAGTTGTGGATATCACTACAGATCCTAGCACTCATTGG
GGAGCTTACATCAATCGTTATATCTTAGGACGGGAAATGAGAACGTCTTG
TCAACCACCATGCGGAATTCGAGCTTTAACCAAcgataaaagtgaaattt
caacCAAAGTGAACCGTATTGGTCACAGTACTATTGTGCAGCTCTTCTAC
GGACCAGCTGTTTTCGAACATGCGACGAGGCACATCTATCTCCAAGACAG
TTTGAACTACCATGATTGTGATGACACAACTATTCCTGGTAATATAGATC
AAAACCCTTGGCATGAGGGGTATTGGAAGTTTTTCGTGAGGTGTTAGCCA
CGTTCACAACTAAACGTTCTTTCGCAATGACGTCTATTGGATCATTACAT
TTCATATCTATACATGGGATAGATGAACCTTTCCATACGAGAAtaattgg
tccagcgcgcagcagaatggacctttaaaaagcaactgtgcgcgcaataa
attaacaagtccaggatAAACCAACcaccgatctagaatttttgccccgc
ctacccgcgcgatgtttgacctatgttttggattgaaatgGTTGTAGAAg
caaatttcccggttagattaaagggttgtttcaggtagggtcaggtaggg
ttagggctagactagtaaactagtcggttattacttataaccttataata
aaactgtcaatcaaataatgtaaa

Coding sequence (CDS) from alignment at sc0000090_pilon:1166795..1169918+

>MSTRG.12162.1.p1 ID=MSTRG.12162.1.p1|Name=MSTRG.12162.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4416bp|location=Sequence derived from alignment at sc0000090_pilon:1166795..1169918+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAgtcattaaaatatttcttgtactATGCACTTATTCTAATCTTCTA
CAACGAGAGTGTTTGCAGTCAACAACGACACATGTTTTCACCGAATATTC
GTTACCAAGGCTCTCACGGCAACGCGTCATTCAACTATAGTTATATCAAT
CTCAAATATCTGAAAGGATATAAATTGGATATTGCACCTTTGGCAACATA
CAACGTCCATAACAAATCACAATGCGCCaaagaatgcctaaaaactaaag
GTGATTGCAAGAGTACAAATCTCCGAGAAATGAGCGCTGGATTTGAATGT
GAAATCCTTGGGGAAGACATTTACACATCTGACTTTCGATTGGTAGAAGA
CAGCTCCATAACACATTTTATTATAGCCAATAAGTGCTTACAGAATCCAT
GCAGACGAGGATCCAAATGTGTTCCCATTTATCAGAACAATAGTTATTAT
TGTGCAAatTCGAGCTGTAGAATAATGAAGAAAATTGAGCCTCGTTTATC
TACTGGTTATTATGATGTGTTAATTGCTGGAAAATGGAGAAAAGTCTTTT
GTGATATGGACGAAGACGGGGGTGGTTGGATGTTGGTCGGAAATTACTCA
GTCCCATCAACACAAGTTGGACCGGAAATCAATTACGGTGATCTAGATTC
ATTCGCAGAGCTTTCCACTGGAAACTTTCTTCTTGATTCGAACATCTATC
TTCCCGTCATCGATTCTTCATCACCAATCAATGAATTCAGATTCAACTGT
TACAAACCGTCAACGAATAGAGTTGTGGATATCACTACAGATCCTAGCAC
TCATTGGGGAGCTTACATCAATCGTTATATCTTAGGACGGGAAATGAGAA
CGTCTTGTCAACCACCATGCGGAATTCGAGCTTTAACCAAcgataaaagt
gaaatttcaacCAAAGTGAACCGTATTGGTCACAGTACTATTGTGCAGCT
CTTCTACGGACCAGCTGTTTTCGAACATGCGACGAGGCACATCTATCTCC
AAGACAGTTTGAACTACCATGATTGTGATGACACAACTATTCCTGGTAAT
ATAGATCAAAACCCTTGGCATGAGGGGTATTGGAAGTTTTTCGTGAGGTG
TTAGATGGAgtcattaaaatatttcttgtactATGCACTTATTCTAATCT
TCTACAACGAGAGTGTTTGCAGTCAACAACGACACATGTTTTCACCGAAT
ATTCGTTACCAAGGCTCTCACGGCAACGCGTCATTCAACTATAGTTATAT
CAATCTCAAATATCTGAAAGGATATAAATTGGATATTGCACCTTTGGCAA
CATACAACGTCCATAACAAATCACAATGCGCCaaagaatgcctaaaaact
aaagGTGATTGCAAGAGTACAAATCTCCGAGAAATGAGCGCTGGATTTGA
ATGTGAAATCCTTGGGGAAGACATTTACACATCTGACTTTCGATTGGTAG
AAGACAGCTCCATAACACATTTTATTATAGCCAATAAGTGCTTACAGAAT
CCATGCAGACGAGGATCCAAATGTGTTCCCATTTATCAGAACAATAGTTA
TTATTGTGCAAatTCGAGCTGTAGAATAATGAAGAAAATTGAGCCTCGTT
TATCTACTGGTTATTATGATGTGTTAATTGCTGGAAAATGGAGAAAAGTC
TTTTGTGATATGGACGAAGACGGGGGTGGTTGGATGTTGGTCGGAAATTA
CTCAGTCCCATCAACACAAGTTGGACCGGAAATCAATTACGGTGATCTAG
ATTCATTCGCAGAGCTTTCCACTGGAAACTTTCTTCTTGATTCGAACATC
TATCTTCCCGTCATCGATTCTTCATCACCAATCAATGAATTCAGATTCAA
CTGTTACAAACCGTCAACGAATAGAGTTGTGGATATCACTACAGATCCTA
GCACTCATTGGGGAGCTTACATCAATCGTTATATCTTAGGACGGGAAATG
AGAACGTCTTGTCAACCACCATGCGGAATTCGAGCTTTAACCAAcgataa
aagtgaaatttcaacCAAAGTGAACCGTATTGGTCACAGTACTATTGTGC
AGCTCTTCTACGGACCAGCTGTTTTCGAACATGCGACGAGGCACATCTAT
CTCCAAGACAGTTTGAACTACCATGATTGTGATGACACAACTATTCCTGG
TAATATAGATCAAAACCCTTGGCATGAGGGGTATTGGAAGTTTTTCGTGA
GGTGTTAGATGGAgtcattaaaatatttcttgtactATGCACTTATTCTA
ATCTTCTACAACGAGAGTGTTTGCAGTCAACAACGACACATGTTTTCACC
GAATATTCGTTACCAAGGCTCTCACGGCAACGCGTCATTCAACTATAGTT
ATATCAATCTCAAATATCTGAAAGGATATAAATTGGATATTGCACCTTTG
GCAACATACAACGTCCATAACAAATCACAATGCGCCaaagaatgcctaaa
aactaaagGTGATTGCAAGAGTACAAATCTCCGAGAAATGAGCGCTGGAT
TTGAATGTGAAATCCTTGGGGAAGACATTTACACATCTGACTTTCGATTG
GTAGAAGACAGCTCCATAACACATTTTATTATAGCCAATAAGTGCTTACA
GAATCCATGCAGACGAGGATCCAAATGTGTTCCCATTTATCAGAACAATA
GTTATTATTGTGCAAatTCGAGCTGTAGAATAATGAAGAAAATTGAGCCT
CGTTTATCTACTGGTTATTATGATGTGTTAATTGCTGGAAAATGGAGAAA
AGTCTTTTGTGATATGGACGAAGACGGGGGTGGTTGGATGTTGGTCGGAA
ATTACTCAGTCCCATCAACACAAGTTGGACCGGAAATCAATTACGGTGAT
CTAGATTCATTCGCAGAGCTTTCCACTGGAAACTTTCTTCTTGATTCGAA
CATCTATCTTCCCGTCATCGATTCTTCATCACCAATCAATGAATTCAGAT
TCAACTGTTACAAACCGTCAACGAATAGAGTTGTGGATATCACTACAGAT
CCTAGCACTCATTGGGGAGCTTACATCAATCGTTATATCTTAGGACGGGA
AATGAGAACGTCTTGTCAACCACCATGCGGAATTCGAGCTTTAACCAAcg
ataaaagtgaaatttcaacCAAAGTGAACCGTATTGGTCACAGTACTATT
GTGCAGCTCTTCTACGGACCAGCTGTTTTCGAACATGCGACGAGGCACAT
CTATCTCCAAGACAGTTTGAACTACCATGATTGTGATGACACAACTATTC
CTGGTAATATAGATCAAAACCCTTGGCATGAGGGGTATTGGAAGTTTTTC
GTGAGGTGTTAGATGGAgtcattaaaatatttcttgtactATGCACTTAT
TCTAATCTTCTACAACGAGAGTGTTTGCAGTCAACAACGACACATGTTTT
CACCGAATATTCGTTACCAAGGCTCTCACGGCAACGCGTCATTCAACTAT
AGTTATATCAATCTCAAATATCTGAAAGGATATAAATTGGATATTGCACC
TTTGGCAACATACAACGTCCATAACAAATCACAATGCGCCaaagaatgcc
taaaaactaaagGTGATTGCAAGAGTACAAATCTCCGAGAAATGAGCGCT
GGATTTGAATGTGAAATCCTTGGGGAAGACATTTACACATCTGACTTTCG
ATTGGTAGAAGACAGCTCCATAACACATTTTATTATAGCCAATAAGTGCT
TACAGAATCCATGCAGACGAGGATCCAAATGTGTTCCCATTTATCAGAAC
AATAGTTATTATTGTGCAAatTCGAGCTGTAGAATAATGAAGAAAATTGA
GCCTCGTTTATCTACTGGTTATTATGATGTGTTAATTGCTGGAAAATGGA
GAAAAGTCTTTTGTGATATGGACGAAGACGGGGGTGGTTGGATGTTGGTC
GGAAATTACTCAGTCCCATCAACACAAGTTGGACCGGAAATCAATTACGG
TGATCTAGATTCATTCGCAGAGCTTTCCACTGGAAACTTTCTTCTTGATT
CGAACATCTATCTTCCCGTCATCGATTCTTCATCACCAATCAATGAATTC
AGATTCAACTGTTACAAACCGTCAACGAATAGAGTTGTGGATATCACTAC
AGATCCTAGCACTCATTGGGGAGCTTACATCAATCGTTATATCTTAGGAC
GGGAAATGAGAACGTCTTGTCAACCACCATGCGGAATTCGAGCTTTAACC
AAcgataaaagtgaaatttcaacCAAAGTGAACCGTATTGGTCACAGTAC
TATTGTGCAGCTCTTCTACGGACCAGCTGTTTTCGAACATGCGACGAGGC
ACATCTATCTCCAAGACAGTTTGAACTACCATGATTGTGATGACACAACT
ATTCCTGGTAATATAGATCAAAACCCTTGGCATGAGGGGTATTGGAAGTT
TTTCGTGAGGTGTTAG

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.12162	MSTRG.12162	Clytia hemisphaerica_ch_hm2_pilon	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.12162.1.p1	MSTRG.12162.1.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.12162.1.p1.exon1	MSTRG.12162.1.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.12162.1.p1.exon2	MSTRG.12162.1.p1.exon2	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.12162.1.p1.exon3	MSTRG.12162.1.p1.exon3	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.12162.1.p1.exon4	MSTRG.12162.1.p1.exon4	Clytia hemisphaerica_ch_hm2_pilon	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000090_pilon	genome	sc0000090_pilon:1166795..1169918 +

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MSTRG.12162.1.p1 (mRNA) -