MSTRG.12145.1.p1 (mRNA) -

Overview
NameMSTRG.12145.1.p1
Unique NameMSTRG.12145.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000090_pilon:781740..784692-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12145.1.p1 ID=MSTRG.12145.1.p1|Name=MSTRG.12145.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2953bp|location=Sequence derived from alignment at sc0000090_pilon:781740..784692- (Clytia hemisphaerica_ch_hm2_pilon)
TCATCATAACATGGAAAAGTTTATTTTTTAAGGATTGCATCTCAAGCGAA
ACTTGATGAAATAATGATTTTATGTTACATCATCATAATTTTAGCTGATA
AAAATGAATGTCATCTTGAGACAGAGATTAAGACATTTGAAAAATTCTAA
CACAACTACAGCTGGCTATTGGTTAAGATGTATGTCAACACTAGAAACCA
TTGAATTAAATGGACGCAATTACAAGAAAGATCACATGACCAATGTCCCT
CAAAATATTATCAACAGGCTCAATAAACAATTACACAACACAAAGGATCA
CCCATTAGAGATTGTAAAATCAAAGATAGTGGATTATTTTCATGGATACT
TTCGTAACCGTCATGGTGGATGTGTTTTTGCCTCTATAGACAATATCAGC
CCTGTCGTAACTGTACAACAGAATTTTGACAATTTGCTAGTACCAAAAGA
CCATGTGAGCCGTAGTAAAAATGACAATTATTATATCAATGATCTTCAGA
TGTTGAGAGCTCACACTACAGCCCATGAAATTGATTTAATAAGCAGTGGT
TGGAATGCCTTCTTGAACACTGGAGATTGTTACAGAAGAGATGCAATTGA
TAAGAGTCATTTCCCAGTTTTCCATCAGTTAGAAGGTGTACGTATCTTTG
ATGACTTCGAACTGTTCGAGGAAACAAAGGTTTGTTTTAATACTATTTCT
TGACTATAATAATTCAAAGTCATTATAATATGCATAATGTGATGCCTTGC
CCCAATAATATTGGCTTTTTTCTAAGAAGATTTTTGTCAATTTTTTATGT
CTTTAGCCAGTATTTTAGCAGAGATGAGTTTTTTTATCAAAGTGGCTGAA
CTGTTGCAAAGGGCATGTTTGTGCTGTTAATTTTTGGTACATATATTTTG
AAATTTTGTCCTTTGTAGGATAATTCCTTACGTATTTTGGAGAAAACTGC
ATCAATGAGGACAGAAGAAAAACAAGCAGAACACACGATAGATGCTGCAC
GAATCACAGAGTTTAATTTAAAATATACTCTAATGAAACTTGTGGAAAAT
CTTTTTGGTGATAACGTTGAAATGAGATGGGTAGATGCTTATTTTCCATT
CACTCATCCCTCATGGGAACTTGAAGTCAAGTTGAACGGTGAGTGGATGG
AAATGTTGGGGTGTGGCATCTTGGAACAACAGATCTTAAAATATGGTAAA
ACTGTTTGTTTATGGTAAATTTTAAGTTAAAGCTATAAAGCTAAGAAGAG
TTTTGCGAGAGTTTCAATGATAAAAAACTTCGCTAAGTCAAAAGCTAAGA
TAAGATTTTCTAATTCAGAAAGATTTTTATCAGACTTAGGTTTGCAATGA
TGCATAACCACCTCACAAAGTTTAAAAGACTTTTGACCTATTTTGTTAGA
TGTAAAAGATGTTTCTTATGAAAAAGATTCTCTATACTTTCCAAAAATCT
TCATATAATATTTTTCTTGAGAAAATTACAATTTCTGTTCATCTATAGCT
GGTGCAGGTGATCGGATTGGTTGGGCTTTTGGTCTCGGTTTAGAGAGATT
CGCCATGAAGTTGTTTGATATTCCTGATATCAGGTTATTCTGGAGTGAAG
ACGAACGTTTTCTTAAGCAGTTCAAGACAGGTGTTGACACCACATTCCAG
CCGTTCAGTAAATATCCGCCTTCTTACAAAGACATTTCATTTTGGGTGAA
TGATGGGAATTTCTCGTCAAATGATTTATTTGAAATCGCAAGAAGTGTAG
GTGGAGATGTTATTGAAGAGGTAAAAACATTCTTTTAAACCGTATCATTT
GAAAGAAAAGAAAAGAAAAGAAAAAAGTTCAAACAGCTCCGTAAACGAAC
AGTCAACAAACGAAAACATTTTATATCGACTTATCAACATTTTATGTGTC
TTTCTCAAAGTGATTATCTTACCCACATCTTATTATAAATTTTGAAGCAA
TTTTTATCAGAAAAAATAAATTCATGTATCGGTCATAATCTCATAATTAC
CCTCGATTTTTTCATCTTGTATTTAATTAAATGGAAATTCAAATTTTATT
ATGTATTATGATCTTCTCTCTCAATTCATACTGTGAAAAATAGGAGAAAA
TCTTTTTTGTCTTCAGAATTTCCTAATAATAACGTTTGTGAAATGTTTTT
TTTAATTTCAAATTTTTGATTTTGGAGAGGACAAAGTCCTTTATTTTCTA
TTTCATTCTTTCACTTCAGATGACATTAGTGGACCAATTCGTACATCCAA
AAACACAACGCGAATCTCATTGTTACCGCATCACATACAGAGCTATGGAT
AGAACACTTAGAGACGAAGAAGTCAATGATGTCCAAAACAAACTAAGATC
TGAGGCTGCGAAATTACTGCATATTGAACTAAGATGATCATCAAGTCTAG
ATTGTTTTGTTGGTTTGTTGTTATGAAAAGTAGATTCAAGATGTTTCTCA
ACAACACATACAACACCACTCCTACACCAGCACATTAAATGTCCATAGAT
TTGTTCACAGACAACAGTTTTTTCTGAGTGAGGAATCTGGATTGGTGAAA
TAGCTCTAGTAATTGAATGGATGAAAATTGAAATTACAATTCTCAAAAAT
GAAAGTCTTATCGTATTGAGAAGTATCCAATTTTATGGCCTGTCAAAAAT
AAAACAAAAACCTGAGACTTCAATGAATCGGTATGGTGAATGTATTTTAT
AGAGTTTTCAGTGTTTAACTTGGAGTTAATTTTAGTGCACGAGTCATGTC
ACGGTCTAATACCTTAAGATAAAGATGACAAAATAAAAATGTAAAATTGT
AAATACATTTTGAAAAATTAGGATAATTGAAATTGCATTTTTCATACTAG
GTTTTCATAATATATATTTATGTAGCATAATTATAGTCAGCGAATGAAAG
AACGATTTTCTTTATTTTTACTGTTGTTGAATTTCTAATCAACTCACCTT
TAA

Coding sequence (CDS) from alignment at sc0000090_pilon:781740..784692-

>MSTRG.12145.1.p1 ID=MSTRG.12145.1.p1|Name=MSTRG.12145.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5172bp|location=Sequence derived from alignment at sc0000090_pilon:781740..784692- (Clytia hemisphaerica_ch_hm2_pilon)
ATGACATTAGTGGACCAATTCGTACATCCAAAAACACAACGCGAATCTCA
TTGTTACCGCATCACATACAGAGCTATGGATAGAACACTTAGAGACGAAG
AAGTCAATGATGTCCAAAACAAACTAAGATCTGAGGCTGCGAAATTACTG
CATATTGAACTAAGATGACTGGTGCAGGTGATCGGATTGGTTGGGCTTTT
GGTCTCGGTTTAGAGAGATTCGCCATGAAGTTGTTTGATATTCCTGATAT
CAGGTTATTCTGGAGTGAAGACGAACGTTTTCTTAAGCAGTTCAAGACAG
GTGTTGACACCACATTCCAGCCGTTCAGTAAATATCCGCCTTCTTACAAA
GACATTTCATTTTGGGTGAATGATGGGAATTTCTCGTCAAATGATTTATT
TGAAATCGCAAGAAGTGTAGGTGGAGATGTTATTGAAGAGGATAATTCCT
TACGTATTTTGGAGAAAACTGCATCAATGAGGACAGAAGAAAAACAAGCA
GAACACACGATAGATGCTGCACGAATCACAGAGTTTAATTTAAAATATAC
TCTAATGAAACTTGTGGAAAATCTTTTTGGTGATAACGTTGAAATGAGAT
GGGTAGATGCTTATTTTCCATTCACTCATCCCTCATGGGAACTTGAAGTC
AAGTTGAACGGTGAGTGGATGGAAATGTTGGGGTGTGGCATCTTGGAACA
ACAGATCTTAAAATATGATGAATGTCATCTTGAGACAGAGATTAAGACAT
TTGAAAAATTCTAACACAACTACAGCTGGCTATTGGTTAAGATGTATGTC
AACACTAGAAACCATTGAATTAAATGGACGCAATTACAAGAAAGATCACA
TGACCAATGTCCCTCAAAATATTATCAACAGGCTCAATAAACAATTACAC
AACACAAAGGATCACCCATTAGAGATTGTAAAATCAAAGATAGTGGATTA
TTTTCATGGATACTTTCGTAACCGTCATGGTGGATGTGTTTTTGCCTCTA
TAGACAATATCAGCCCTGTCGTAACTGTACAACAGAATTTTGACAATTTG
CTAGTACCAAAAGACCATGTGAGCCGTAGTAAAAATGACAATTATTATAT
CAATGATCTTCAGATGTTGAGAGCTCACACTACAGCCCATGAAATTGATT
TAATAAGCAGTGGTTGGAATGCCTTCTTGAACACTGGAGATTGTTACAGA
AGAGATGCAATTGATAAGAGTCATTTCCCAGTTTTCCATCAGTTAGAAGG
TGTACGTATCTTTGATGACTTCGAACTGTTCGAGGAAACAAAGATGACAT
TAGTGGACCAATTCGTACATCCAAAAACACAACGCGAATCTCATTGTTAC
CGCATCACATACAGAGCTATGGATAGAACACTTAGAGACGAAGAAGTCAA
TGATGTCCAAAACAAACTAAGATCTGAGGCTGCGAAATTACTGCATATTG
AACTAAGATGACTGGTGCAGGTGATCGGATTGGTTGGGCTTTTGGTCTCG
GTTTAGAGAGATTCGCCATGAAGTTGTTTGATATTCCTGATATCAGGTTA
TTCTGGAGTGAAGACGAACGTTTTCTTAAGCAGTTCAAGACAGGTGTTGA
CACCACATTCCAGCCGTTCAGTAAATATCCGCCTTCTTACAAAGACATTT
CATTTTGGGTGAATGATGGGAATTTCTCGTCAAATGATTTATTTGAAATC
GCAAGAAGTGTAGGTGGAGATGTTATTGAAGAGGATAATTCCTTACGTAT
TTTGGAGAAAACTGCATCAATGAGGACAGAAGAAAAACAAGCAGAACACA
CGATAGATGCTGCACGAATCACAGAGTTTAATTTAAAATATACTCTAATG
AAACTTGTGGAAAATCTTTTTGGTGATAACGTTGAAATGAGATGGGTAGA
TGCTTATTTTCCATTCACTCATCCCTCATGGGAACTTGAAGTCAAGTTGA
ACGGTGAGTGGATGGAAATGTTGGGGTGTGGCATCTTGGAACAACAGATC
TTAAAATATGATGAATGTCATCTTGAGACAGAGATTAAGACATTTGAAAA
ATTCTAACACAACTACAGCTGGCTATTGGTTAAGATGTATGTCAACACTA
GAAACCATTGAATTAAATGGACGCAATTACAAGAAAGATCACATGACCAA
TGTCCCTCAAAATATTATCAACAGGCTCAATAAACAATTACACAACACAA
AGGATCACCCATTAGAGATTGTAAAATCAAAGATAGTGGATTATTTTCAT
GGATACTTTCGTAACCGTCATGGTGGATGTGTTTTTGCCTCTATAGACAA
TATCAGCCCTGTCGTAACTGTACAACAGAATTTTGACAATTTGCTAGTAC
CAAAAGACCATGTGAGCCGTAGTAAAAATGACAATTATTATATCAATGAT
CTTCAGATGTTGAGAGCTCACACTACAGCCCATGAAATTGATTTAATAAG
CAGTGGTTGGAATGCCTTCTTGAACACTGGAGATTGTTACAGAAGAGATG
CAATTGATAAGAGTCATTTCCCAGTTTTCCATCAGTTAGAAGGTGTACGT
ATCTTTGATGACTTCGAACTGTTCGAGGAAACAAAGATGACATTAGTGGA
CCAATTCGTACATCCAAAAACACAACGCGAATCTCATTGTTACCGCATCA
CATACAGAGCTATGGATAGAACACTTAGAGACGAAGAAGTCAATGATGTC
CAAAACAAACTAAGATCTGAGGCTGCGAAATTACTGCATATTGAACTAAG
ATGACTGGTGCAGGTGATCGGATTGGTTGGGCTTTTGGTCTCGGTTTAGA
GAGATTCGCCATGAAGTTGTTTGATATTCCTGATATCAGGTTATTCTGGA
GTGAAGACGAACGTTTTCTTAAGCAGTTCAAGACAGGTGTTGACACCACA
TTCCAGCCGTTCAGTAAATATCCGCCTTCTTACAAAGACATTTCATTTTG
GGTGAATGATGGGAATTTCTCGTCAAATGATTTATTTGAAATCGCAAGAA
GTGTAGGTGGAGATGTTATTGAAGAGGATAATTCCTTACGTATTTTGGAG
AAAACTGCATCAATGAGGACAGAAGAAAAACAAGCAGAACACACGATAGA
TGCTGCACGAATCACAGAGTTTAATTTAAAATATACTCTAATGAAACTTG
TGGAAAATCTTTTTGGTGATAACGTTGAAATGAGATGGGTAGATGCTTAT
TTTCCATTCACTCATCCCTCATGGGAACTTGAAGTCAAGTTGAACGGTGA
GTGGATGGAAATGTTGGGGTGTGGCATCTTGGAACAACAGATCTTAAAAT
ATGATGAATGTCATCTTGAGACAGAGATTAAGACATTTGAAAAATTCTAA
CACAACTACAGCTGGCTATTGGTTAAGATGTATGTCAACACTAGAAACCA
TTGAATTAAATGGACGCAATTACAAGAAAGATCACATGACCAATGTCCCT
CAAAATATTATCAACAGGCTCAATAAACAATTACACAACACAAAGGATCA
CCCATTAGAGATTGTAAAATCAAAGATAGTGGATTATTTTCATGGATACT
TTCGTAACCGTCATGGTGGATGTGTTTTTGCCTCTATAGACAATATCAGC
CCTGTCGTAACTGTACAACAGAATTTTGACAATTTGCTAGTACCAAAAGA
CCATGTGAGCCGTAGTAAAAATGACAATTATTATATCAATGATCTTCAGA
TGTTGAGAGCTCACACTACAGCCCATGAAATTGATTTAATAAGCAGTGGT
TGGAATGCCTTCTTGAACACTGGAGATTGTTACAGAAGAGATGCAATTGA
TAAGAGTCATTTCCCAGTTTTCCATCAGTTAGAAGGTGTACGTATCTTTG
ATGACTTCGAACTGTTCGAGGAAACAAAGATGACATTAGTGGACCAATTC
GTACATCCAAAAACACAACGCGAATCTCATTGTTACCGCATCACATACAG
AGCTATGGATAGAACACTTAGAGACGAAGAAGTCAATGATGTCCAAAACA
AACTAAGATCTGAGGCTGCGAAATTACTGCATATTGAACTAAGATGACTG
GTGCAGGTGATCGGATTGGTTGGGCTTTTGGTCTCGGTTTAGAGAGATTC
GCCATGAAGTTGTTTGATATTCCTGATATCAGGTTATTCTGGAGTGAAGA
CGAACGTTTTCTTAAGCAGTTCAAGACAGGTGTTGACACCACATTCCAGC
CGTTCAGTAAATATCCGCCTTCTTACAAAGACATTTCATTTTGGGTGAAT
GATGGGAATTTCTCGTCAAATGATTTATTTGAAATCGCAAGAAGTGTAGG
TGGAGATGTTATTGAAGAGGATAATTCCTTACGTATTTTGGAGAAAACTG
CATCAATGAGGACAGAAGAAAAACAAGCAGAACACACGATAGATGCTGCA
CGAATCACAGAGTTTAATTTAAAATATACTCTAATGAAACTTGTGGAAAA
TCTTTTTGGTGATAACGTTGAAATGAGATGGGTAGATGCTTATTTTCCAT
TCACTCATCCCTCATGGGAACTTGAAGTCAAGTTGAACGGTGAGTGGATG
GAAATGTTGGGGTGTGGCATCTTGGAACAACAGATCTTAAAATATGATGA
ATGTCATCTTGAGACAGAGATTAAGACATTTGAAAAATTCTAACACAACT
ACAGCTGGCTATTGGTTAAGATGTATGTCAACACTAGAAACCATTGAATT
AAATGGACGCAATTACAAGAAAGATCACATGACCAATGTCCCTCAAAATA
TTATCAACAGGCTCAATAAACAATTACACAACACAAAGGATCACCCATTA
GAGATTGTAAAATCAAAGATAGTGGATTATTTTCATGGATACTTTCGTAA
CCGTCATGGTGGATGTGTTTTTGCCTCTATAGACAATATCAGCCCTGTCG
TAACTGTACAACAGAATTTTGACAATTTGCTAGTACCAAAAGACCATGTG
AGCCGTAGTAAAAATGACAATTATTATATCAATGATCTTCAGATGTTGAG
AGCTCACACTACAGCCCATGAAATTGATTTAATAAGCAGTGGTTGGAATG
CCTTCTTGAACACTGGAGATTGTTACAGAAGAGATGCAATTGATAAGAGT
CATTTCCCAGTTTTCCATCAGTTAGAAGGTGTACGTATCTTTGATGACTT
CGAACTGTTCGAGGAAACAAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12145MSTRG.12145Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12145.1.p1MSTRG.12145.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12145.1.p1.exon4MSTRG.12145.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12145.1.p1.exon3MSTRG.12145.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12145.1.p1.exon2MSTRG.12145.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12145.1.p1.exon1MSTRG.12145.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000090_pilongenomesc0000090_pilon:781740..784692 -