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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000090_pilon:658916..662416- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.12138.1.p1 ID=MSTRG.12138.1.p1|Name=MSTRG.12138.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3501bp|location=Sequence derived from alignment at sc0000090_pilon:658916..662416- (Clytia hemisphaerica_ch_hm2_pilon)
TAAGAATGAAATGGAAGGTCGACTTCTTCAAAAGAGAACCTTCACTTCAA
AATAAAAATTTCATGTTGACAAAAAGACGAGAGAATTATAATAAAGAGAA
ATAGAAAGAAATTTTATGGAAAAAAAAGAAATTAATTTTCCATTTTTTCC
TATGCGATGATTAGATGACGTTGACTAAGAAGATCTGTTACACATCCAAT
AAAAACATTTTGCTGGTCTTTAAGAAAAAGTGCTCCAAAGATGTGGTATA
CCTTTTGGCTTGCCTACCCAAACCGAATGACAGTCATTGATATACATCCG
GAAGTTGATTTATCGAGACAAAAAAAATCAAGCGAGGAGCACAACCATAA
TATCTTGATAAGCGGTAAGCAAAACAAGCCATTGACAGCATCGTACTGGA
GAAAGATTCAAGAACTTATGGAATGTACACAACAAAATTTCAACAACAGT
GTCATTCGTAAAAGAAACATACATACCATTTATGTTGCATCTGAGAAAAT
GGACTCATACACTAATATGATTCTGACGTGTTTTGTCAGCCATAATTTGA
CGGCGTCAGGAGACAGAATTTTCTTAAATAGCGTATTAAACCAAGACTTT
GATTTGAAATTTGCAGCGGCACTTGAAAAACGAGACGAGCGCCAGCGCTG
CTTAGATATCCTTATGGATGTTGCGATAGTTTGCTATATAGCTGCTTTGA
CGAACACTCTACCCAATATTGATATTTATAACGGTTTAAAGAACACAGCA
ACGAGTATAACGGAGACGGCAGCAACAAATACAGCCACCCTTGGGATCGA
ATCAGCCGCTCAAGTGATCGGAAACGCAATGGCTGGGGCGGCAATTTCCG
CCATTGTAGATGTGGCGGTTTCTTCTGCAACTATTTACGTTGCTAAGAGA
CAGAAAGATGACGGTCGTATGACTGAAGAAGAATTTAATATCAAAATCAA
AAAGACTGTTTGTGAATCAAGTTTAAAGTTTGTTGGCGGAACGACCGGTT
CCATTCTCGGACAAGCATTAATTCCCGTTCCCGTGGTGGGCGCTTTTGTG
GGCGGTTTTTGTGGTAGCTTGATTGGGGCGGGAATCGGGAAAGGTATCAA
TTATGGCGTATTTGATCGGAAGAACAAAAAAACACAAAATGAGAAGAAAT
TAAATGAAAGCGAGCAACATATTAAGAAACGATACGGTCGGAAAATACGC
GGATATGTCCCAAAAATCATCATCTACAATGAAAGTAAAAAGGAATTCGA
AGAGAAACATTTTCAAAAAACTGTTAAAAATTATTTTAAGCCTGTGGAAA
CATTAAGTGAGACTCAGGCTAAAGTAAGCGAAGCAGTGACAGTCAAACCG
TACCTGAATAAATGGAGAAACAAAACTTTAAAAATCGACGAGCAAAACAC
TGAAGTGAAGGCAACTACAGAAAAACAGCGATCCGTGTTATCAAAATGGA
AGAAATCTGTTACTGTTAAAACACCTGAGAAGATAGATTCTCCTCGAAAG
GATCATCAATCGGAGAAAGAGATTTCTGTTTTGTCTATATGGAAGAAAGC
TGCACCTAAAGCAATAATTGATAAACCTGATACTAGGTCTTCTCCAGATA
AGGAGCAACAAGCGACCGATAAACAACTCTCGGTATTGACGAAATGGAGA
AAATCTACACCATCTGAAGTTGCTAAAACACCTGAAGTCAAATCTAGTTC
TAAAGTGGAACAAAATGTGAACGCAACACAAGATTCGCCAACCATCGAGA
AGCCACTACTTTTAACAACAAGACGAGAATCTTATATTGATCGTTTATCT
CCGAATCAGCTTATTACGCAGGTCAAAAGTTCGCTCAGCAAGAGTTCATC
AAAAGAAGAGGATTTGGAGCAGATTAGCGCGGAAGCTTCACAAGTATCAA
GCCCGTTATCGACCACTGGTACAAATTCACCTAGATCCAATACACCAAAT
GATGTTCCGATATTTCACAGACTGTCAATCAAATCTCTAAAAGATAGTTT
TCGGAACATCAGTAATTCGAGCTTGAGGGACGAAAATGAATTTGAGAGAG
AAATTCTACACGAAGAAAGCAATGAAGAAGTGTTTTCAGAAACTGCTGAA
TCTCAAGCCCGTCAAAACGAATATTCAAAAAATGAGAGTGAAGAAGAAAC
AAAATTTTCGCGTTTCAAAAGTTTCCATTCTTCAATTCGAATGAAAAATC
GAGAACGAATGAAGTTCCCTTCCCTTCAGAAAGTTTCACTTTTCAATAGC
TCTGTTGATGCAGAAGGAAATGTGTACGATAATCGAAAAGCAGATACGAA
GGAGTACAGTGATGACCAAATAAGTCCTAACGATGACAATAACAACTCTC
CCTCACAGGTTGAAAATAATGACTTGTCCGAATTAAAAGACATTAATCAA
GAGAACGTTCAAGGAAATAAAGCAGAGTCGACATTAAACGGTCTGACGAA
TAAATTATTAGCTTTAACAGGTCTAAGGTCACCATTCAAAACCACTTCTC
CAGACCAAGAAAATGCTGACAATGCAAGATCATCAAGTCCATCTAAGAAA
TGTAATGGTCTTGTTAATAGTAGTACAGATGACTCTTTTGAGGAACACTC
CGCGGACAAAAAAACCTTATCCCGTGCTCCTTTATCAAATTCGCTTAGCG
AGAATTCGTCAACAAGTGAAAGTCCAGAGTTAAAATTCTCTGAGCGTGAA
TTTGATTGGTGGAATCGTAAATTACGTCATCGATTTGAAAACGAGGTTAA
TAAAGATGAAGGATCAAGTCAGTCAGAGCAAAAAAAATCTGGGAAAAAGA
CAGTCGAGAAACATCCAAGAGAGACAAAGCGAAGAACATCTTCCATAACT
GAAATCGAAGACGAAGACAATGATAATAGTAAAAAGGAAAAAAAAATATT
TTCGACACTAAAAAGCTTTACTAAGAAATTCAAATGACTTTGTAAAACCT
CGCTTTTAGGCTTTACGACGCAAAGATATAAAAAAAGTTTTGTACTTGAT
AATTTCACAACATTTTGAATTGTAGGTGTGTTGTCTAGTAAATTTATCAT
AAAGTAGTATTCTATCTAAAATTTACATGTCCTTATACTTCATATACAAT
AAAATATTATTTTCTAAAATAGAAAAAAATGTGCAAATTTCTTATAATGA
TAATTACCATAATCAACTTTGAAAATAATTTTAGTACAAACACAAAAACT
TTACGAGGTGAAAAAATCAGAGAGGCCAATTGTCTGCAAAATTTCAAATC
GAAGAAAACCAATAGATCAACAAATATTCTTGCAAAAGCTACCGACTATT
AAGATATCAAATTCAGCGGACAATTTAACTATTTTAAAAGCACCTAGTTA
CGACCTCTACAACTTCAAAATACGAACGTCGATTATTGACAGTCGATATG
TTATGATTTATTCATCTTGATATTACTTTTTAAACCTTGTTGGAAAGATA
ACTTTAAGAGGATGAAATTAAGACTTCAAAGTCCCTTACAGTGGATTTCA
C Coding sequence (CDS) from alignment at sc0000090_pilon:658916..662416- >MSTRG.12138.1.p1 ID=MSTRG.12138.1.p1|Name=MSTRG.12138.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2697bp|location=Sequence derived from alignment at sc0000090_pilon:658916..662416- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTGGTATACCTTTTGGCTTGCCTACCCAAACCGAATGACAGTCATTGA
TATACATCCGGAAGTTGATTTATCGAGACAAAAAAAATCAAGCGAGGAGC
ACAACCATAATATCTTGATAAGCGGTAAGCAAAACAAGCCATTGACAGCA
TCGTACTGGAGAAAGATTCAAGAACTTATGGAATGTACACAACAAAATTT
CAACAACAGTGTCATTCGTAAAAGAAACATACATACCATTTATGTTGCAT
CTGAGAAAATGGACTCATACACTAATATGATTCTGACGTGTTTTGTCAGC
CATAATTTGACGGCGTCAGGAGACAGAATTTTCTTAAATAGCGTATTAAA
CCAAGACTTTGATTTGAAATTTGCAGCGGCACTTGAAAAACGAGACGAGC
GCCAGCGCTGCTTAGATATCCTTATGGATGTTGCGATAGTTTGCTATATA
GCTGCTTTGACGAACACTCTACCCAATATTGATATTTATAACGGTTTAAA
GAACACAGCAACGAGTATAACGGAGACGGCAGCAACAAATACAGCCACCC
TTGGGATCGAATCAGCCGCTCAAGTGATCGGAAACGCAATGGCTGGGGCG
GCAATTTCCGCCATTGTAGATGTGGCGGTTTCTTCTGCAACTATTTACGT
TGCTAAGAGACAGAAAGATGACGGTCGTATGACTGAAGAAGAATTTAATA
TCAAAATCAAAAAGACTGTTTGTGAATCAAGTTTAAAGTTTGTTGGCGGA
ACGACCGGTTCCATTCTCGGACAAGCATTAATTCCCGTTCCCGTGGTGGG
CGCTTTTGTGGGCGGTTTTTGTGGTAGCTTGATTGGGGCGGGAATCGGGA
AAGGTATCAATTATGGCGTATTTGATCGGAAGAACAAAAAAACACAAAAT
GAGAAGAAATTAAATGAAAGCGAGCAACATATTAAGAAACGATACGGTCG
GAAAATACGCGGATATGTCCCAAAAATCATCATCTACAATGAAAGTAAAA
AGGAATTCGAAGAGAAACATTTTCAAAAAACTGTTAAAAATTATTTTAAG
CCTGTGGAAACATTAAGTGAGACTCAGGCTAAAGTAAGCGAAGCAGTGAC
AGTCAAACCGTACCTGAATAAATGGAGAAACAAAACTTTAAAAATCGACG
AGCAAAACACTGAAGTGAAGGCAACTACAGAAAAACAGCGATCCGTGTTA
TCAAAATGGAAGAAATCTGTTACTGTTAAAACACCTGAGAAGATAGATTC
TCCTCGAAAGGATCATCAATCGGAGAAAGAGATTTCTGTTTTGTCTATAT
GGAAGAAAGCTGCACCTAAAGCAATAATTGATAAACCTGATACTAGGTCT
TCTCCAGATAAGGAGCAACAAGCGACCGATAAACAACTCTCGGTATTGAC
GAAATGGAGAAAATCTACACCATCTGAAGTTGCTAAAACACCTGAAGTCA
AATCTAGTTCTAAAGTGGAACAAAATGTGAACGCAACACAAGATTCGCCA
ACCATCGAGAAGCCACTACTTTTAACAACAAGACGAGAATCTTATATTGA
TCGTTTATCTCCGAATCAGCTTATTACGCAGGTCAAAAGTTCGCTCAGCA
AGAGTTCATCAAAAGAAGAGGATTTGGAGCAGATTAGCGCGGAAGCTTCA
CAAGTATCAAGCCCGTTATCGACCACTGGTACAAATTCACCTAGATCCAA
TACACCAAATGATGTTCCGATATTTCACAGACTGTCAATCAAATCTCTAA
AAGATAGTTTTCGGAACATCAGTAATTCGAGCTTGAGGGACGAAAATGAA
TTTGAGAGAGAAATTCTACACGAAGAAAGCAATGAAGAAGTGTTTTCAGA
AACTGCTGAATCTCAAGCCCGTCAAAACGAATATTCAAAAAATGAGAGTG
AAGAAGAAACAAAATTTTCGCGTTTCAAAAGTTTCCATTCTTCAATTCGA
ATGAAAAATCGAGAACGAATGAAGTTCCCTTCCCTTCAGAAAGTTTCACT
TTTCAATAGCTCTGTTGATGCAGAAGGAAATGTGTACGATAATCGAAAAG
CAGATACGAAGGAGTACAGTGATGACCAAATAAGTCCTAACGATGACAAT
AACAACTCTCCCTCACAGGTTGAAAATAATGACTTGTCCGAATTAAAAGA
CATTAATCAAGAGAACGTTCAAGGAAATAAAGCAGAGTCGACATTAAACG
GTCTGACGAATAAATTATTAGCTTTAACAGGTCTAAGGTCACCATTCAAA
ACCACTTCTCCAGACCAAGAAAATGCTGACAATGCAAGATCATCAAGTCC
ATCTAAGAAATGTAATGGTCTTGTTAATAGTAGTACAGATGACTCTTTTG
AGGAACACTCCGCGGACAAAAAAACCTTATCCCGTGCTCCTTTATCAAAT
TCGCTTAGCGAGAATTCGTCAACAAGTGAAAGTCCAGAGTTAAAATTCTC
TGAGCGTGAATTTGATTGGTGGAATCGTAAATTACGTCATCGATTTGAAA
ACGAGGTTAATAAAGATGAAGGATCAAGTCAGTCAGAGCAAAAAAAATCT
GGGAAAAAGACAGTCGAGAAACATCCAAGAGAGACAAAGCGAAGAACATC
TTCCATAACTGAAATCGAAGACGAAGACAATGATAATAGTAAAAAGGAAA
AAAAAATATTTTCGACACTAAAAAGCTTTACTAAGAAATTCAAATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000090_pilon | genome | sc0000090_pilon:658916..662416 - |
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