MSTRG.12100.1.p1 (mRNA) -

Overview
NameMSTRG.12100.1.p1
Unique NameMSTRG.12100.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000089_pilon:1309104..1311234+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12100.1.p1 ID=MSTRG.12100.1.p1|Name=MSTRG.12100.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2131bp|location=Sequence derived from alignment at sc0000089_pilon:1309104..1311234+ (Clytia hemisphaerica_ch_hm2_pilon)
AAGACTCTAAAGAGAAACCAGTTGTTTGATACGAATTGTTTGTTGACGAC
CATACAAAGCGACTAAAGCCTTTCAACGAATGAAAAATCATAAAGGATCA
ACAAAATAAGGGACTCCGCAGTGgcacaaatAaaaaaaataCagtttGta
aaaagaaacaTCTTTTACAACCGTTCAGCTATCTACAAATCATTCGAACG
AATCAAGCCACAATCAAGGTGACTTCAAAATGAATGTATCCAATTTCTCA
GATATTGGAAGAAATCACTCACTACCTCATCCCAATTACGAGTTAACCAT
TGTTTACACAGTCTCCAGTGTTGGTTGTTTTCTTCTTCTGGTTGCTGCCC
TTCTTGTGTTATCAATCATACAACTACCTACTGGTATATTCGCTCAACGG
AAATGGGCTGCTGGAGTTTTCTCATTTGCTTGTTTTGCAACCGTGTTCCA
AATGTTATCCTACCATGACGAACGAGAGAATCTTATAAATTCTTGGGGAC
GAATATTGGTGGAGGTATTAGGAATACTTTTAATGATTGTtggaacattt
tctttctttcaaagaaCAGAAAATCATCAACGACCGTTGAATTATAAAGA
CCGGTATCTGGCTTCTTTCTTGTTCTGGATAACTTTATTATGTATATTTA
CTATGAGTTGTTTGATCATGGCTGGTGCTTTCGAACGAAAAGAATGGCTT
TCTTTAACAGGAAACATACTGGCAATTTTACAGAAACTGACTCAAGCTGT
TTTGTATAAGGCTAGGCTACAAAATAGGTGTGCCATACCGGAGAAGAAAA
TCGAAGCTATCTGGTATTTGAGGGCACTTTCTTTGTTCAATCTACTCATG
TGGGAGAACGATTTAATTAATCTGAGCGAagttaaaatgtaaacattgaa
aCCACGTATGAACCTTAAAACAAACTGTAAACTTGGACAACCCTCAAATC
TGGTATCAGTCTTGTATGATTCGTTGGTTGTTGAATATCGGCTTTTAATG
TCCATGATTTTCCTTGAACATTCTTTTGATATAGAATTTGAAGCCCCCAA
CATGAATTATCAGGGGTTCCATAATGAACAGAGACCAGAGCATGAACATT
TTGGCTTACACAGAGGAATGGCTTATATTATCGGCGTCGCATTTTTTCTG
TTTCAAGGAGTAAATATCATTCAATATACAAGTCAAGTGGGTTGGCCAAA
CTTCGTGGCTTATTTAACTGATATTCTGTTGATAGTGCTGGGATTGATAA
TTTTTGTGAAGGTAAGTTGAACGTGTCCATTAACAGGAGTaaaattaaac
caaaaggtataccaagaaaaaagaaaggttaaggggaaaaaTAATACTCC
ACCATGGTTTCTATACTTCACGAAACAAAGTAGAGTGagagatttttcta
aattaattttggtgttgaCAATTTGGCTAACCCATAATCAGTTTTGGGGG
GAAATTTATTTCCCTGGTAGTGATAAACTAACATAAACTAGAAATAAGGT
TGCCGGCAACCAATATCTGTAGAATttgcatttttatttatttccagATT
AAAAGACTTCTTCCAGAAGATTTTGAAGAAGATTGCAGTGCTGTGGATCT
TCTGTTGGTCATGATGGGTATGTTTTCCATTCTTTATTGGCTCTTCAGAT
GTTGTGTGGTTGGAACATGGGCAATTTCTTTCACAAATCACCATCTCAAA
AATTATGCACTTTGGAATACAGTTAAGTATGGGTTGCGTATATTTTCGAC
AGCTTTCTTGGTGTTTATTTTTACGAATATCCCTCGTAACATCCCTGATA
ACAATCGCGTAGTCCAAAGCAGTGAATTACATTTTTTGATGCCGTTGTAT
CTGTTTGTTTTACTGGCCAGTTACGCGAGTTCGATTATTGCGACTTATAA
TGGACAAATTGAAAGTTGGATTCTCGCTTTATACCCTGATTTATCGATTG
GGTTTCAAATTTTGTATCAAGCTGGAGGACCTATTCATTTGGGGTTTTCC
CTGCATGTCGTGGTTCACTTTGCTTACATCTGTAAAGCGTTAAGTGATGA
ATATACAAGAGTTGCAACTGAAATCGAGGTGGATGCTGACGATGCTGGTG
ATTAAGAATGATGAATTACAGTAAAAACCTA

Coding sequence (CDS) from alignment at sc0000089_pilon:1309104..1311234+

>MSTRG.12100.1.p1 ID=MSTRG.12100.1.p1|Name=MSTRG.12100.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1824bp|location=Sequence derived from alignment at sc0000089_pilon:1309104..1311234+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAACCTTAAAACAAACTGTAAACTTGGACAACCCTCAAATCTGGTATC
AGTCTTGTATGATTCGTTGGTTGTTGAATATCGGCTTTTAATGTCCATGA
TTTTCCTTGAACATTCTTTTGATATAGAATTTGAAGCCCCCAACATGAAT
TATCAGGGGTTCCATAATGAACAGAGACCAGAGCATGAACATTTTGGCTT
ACACAGAGGAATGGCTTATATTATCGGCGTCGCATTTTTTCTGTTTCAAG
GAGTAAATATCATTCAATATACAAGTCAAGTGGGTTGGCCAAACTTCGTG
GCTTATTTAACTGATATTCTGTTGATAGTGCTGGGATTGATAATTTTTGT
GAAGATTAAAAGACTTCTTCCAGAAGATTTTGAAGAAGATTGCAGTGCTG
TGGATCTTCTGTTGGTCATGATGGGTATGTTTTCCATTCTTTATTGGCTC
TTCAGATGTTGTGTGGTTGGAACATGGGCAATTTCTTTCACAAATCACCA
TCTCAAAAATTATGCACTTTGGAATACAGTTAAGTATGGGTTGCGTATAT
TTTCGACAGCTTTCTTGGTGTTTATTTTTACGAATATCCCTCGTAACATC
CCTGATAACAATCGCGTAGTCCAAAGCAGTGAATTACATTTTTTGATGCC
GTTGTATCTGTTTGTTTTACTGGCCAGTTACGCGAGTTCGATTATTGCGA
CTTATAATGGACAAATTGAAAGTTGGATTCTCGCTTTATACCCTGATTTA
TCGATTGGGTTTCAAATTTTGTATCAAGCTGGAGGACCTATTCATTTGGG
GTTTTCCCTGCATGTCGTGGTTCACTTTGCTTACATCTGTAAAGCGTTAA
GTGATGAATATACAAGAGTTGCAACTGAAATCGAGGTGGATGCTGACGAT
GCTGGTGATTAAATGAACCTTAAAACAAACTGTAAACTTGGACAACCCTC
AAATCTGGTATCAGTCTTGTATGATTCGTTGGTTGTTGAATATCGGCTTT
TAATGTCCATGATTTTCCTTGAACATTCTTTTGATATAGAATTTGAAGCC
CCCAACATGAATTATCAGGGGTTCCATAATGAACAGAGACCAGAGCATGA
ACATTTTGGCTTACACAGAGGAATGGCTTATATTATCGGCGTCGCATTTT
TTCTGTTTCAAGGAGTAAATATCATTCAATATACAAGTCAAGTGGGTTGG
CCAAACTTCGTGGCTTATTTAACTGATATTCTGTTGATAGTGCTGGGATT
GATAATTTTTGTGAAGATTAAAAGACTTCTTCCAGAAGATTTTGAAGAAG
ATTGCAGTGCTGTGGATCTTCTGTTGGTCATGATGGGTATGTTTTCCATT
CTTTATTGGCTCTTCAGATGTTGTGTGGTTGGAACATGGGCAATTTCTTT
CACAAATCACCATCTCAAAAATTATGCACTTTGGAATACAGTTAAGTATG
GGTTGCGTATATTTTCGACAGCTTTCTTGGTGTTTATTTTTACGAATATC
CCTCGTAACATCCCTGATAACAATCGCGTAGTCCAAAGCAGTGAATTACA
TTTTTTGATGCCGTTGTATCTGTTTGTTTTACTGGCCAGTTACGCGAGTT
CGATTATTGCGACTTATAATGGACAAATTGAAAGTTGGATTCTCGCTTTA
TACCCTGATTTATCGATTGGGTTTCAAATTTTGTATCAAGCTGGAGGACC
TATTCATTTGGGGTTTTCCCTGCATGTCGTGGTTCACTTTGCTTACATCT
GTAAAGCGTTAAGTGATGAATATACAAGAGTTGCAACTGAAATCGAGGTG
GATGCTGACGATGCTGGTGATTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12100MSTRG.12100Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12100.1.p1.exon1MSTRG.12100.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12100.1.p1.exon2MSTRG.12100.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12100.1.p1MSTRG.12100.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089_pilongenomesc0000089_pilon:1309104..1311234 +