MSTRG.1207.1.p1 (mRNA) -

Overview
NameMSTRG.1207.1.p1
Unique NameMSTRG.1207.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000006_pilon:252147..256114+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1207.1.p1 ID=MSTRG.1207.1.p1|Name=MSTRG.1207.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3968bp|location=Sequence derived from alignment at sc0000006_pilon:252147..256114+ (Clytia hemisphaerica_ch_hm2_pilon)
ATAATATATCTTTTGATTCGtttttttcccttcaaaaaatcgacgtctgt
atggaaaaaatatgtgcgagaaaaagagaaaaagaaaagaaagatttaga
agcaaagattaaggaaatattgtaaaaaaaatcaaaaaagtagtAGACAA
GAATCGCAGAGAggggaatcagaaaatattatatagaatatatttttatt
agagaagatatatatttttggatatCTAAATGTCAAAACATATTGATGGA
CATAATATATGAAAGAACAAAAAACTATCATTtataaaaattccaaattt
tgatGCTGATATTTACATAAGTTGACCTAAATCAACAAACGCGTTCAAAA
TCATATATGGCTTGGTTAACCTTAAAAGTTTAAATGTAAGCAAATGGAgt
gaaaattcaacttttataTACCTTGTTTTAAGCAGCACTACTCTTCTAGT
CATCCGTAACTGGGAAGAATGGAATGTTACTGATTCGTTTCCAGTTCgaa
tacaaaagaaaacaaaaaatgtttttagtaACTACATGCTGcggaaagaa
taaaaaaagttacTGTTAATATCGGATATATCCCAGGATTCGACATCAAC
ATGGCTGGCCAAATACCTTGTGAAGTTACCGATCAAGTGTTCCCAATCAT
CTTATGCACACTTTCAATACTTCTTACCATAATATCCGTGCCGTTAAACG
GAGTCGTACTCGTTGCGATCATCaagaacaaaaaatttcatagtAATTTc
tatttcatcattttcaacaCGACTGCTGCTGATTTTCTAATAGGTGCTAT
ATTATGTCCCTTATCGATTAACATTCACGTGCGTGAGATTCGCGAAGAGC
CCGTAAACGGGACAGTGGACACGTTATTCCATTTTGGTTTATTCACATTA
GCCATGGTTTCAGTTTTAACAATCACTGTGCTCAGTATTGACCGAATGAT
TAGTTTAAAGTTTTCATCACAATACCGAGTCATGAAGAAGATAAATTTCA
TAGCAAGCTTATTAGCTGTGTGGGTCGTAACAGGTGGTCTATCGCCGATC
TATTTCATTCTCGATTACTCATTGTTCCTGACAATTATATCGCTATCGGC
TGTCCTAGTCACAGCAGTTATGATGTTCATAACATATATGTTCTACAGAG
CTCAACTACGTCGCGCTTTCATTAGGTCGCATTCAACGCCAAAAGATCCA
GAAGTCGAAATAAACGATGCGGATGAAATCGAAGACCAGGGACCTGGCAC
TATAAGATACGTCTCCAGCGACTCAGGAGGGTCCTCGTCTCGGCCGTCCA
TTCCTATGAGTATAAAGCGTAAATTTACACGATCCAAAAAGGACAGCATC
ACTTCAATAACCTCAGCACAGAAGCTGGACGAAGATTACCAGGTTTATCT
AATGGAGAAGCGAGCTACAGACACTTTCTTTTACATGATGCTCATCTTCT
TCCTATGTTATATACCAGTTGTCATCATAAGTTTAACTATCCATTTATCG
AAAGGACGATATGGTTGTTACACTATCAACTTACTACAAGAGTGTATAGC
TATACTATGTATCATCAGCTCTGTCTGCAAAACTATAGTATTTGTTGCAC
GTTTAACAGCATTGAGGAAAGCTTGTATTAATTTGTTTATAAGTGATGAA
GAGATGGAACGACGCTGGCGTAAAGAGAGTGTACCGATGGTGCCGAAAAA
GAAGAGGACTCTTAAGGATCGGCTGTTACAAAGGAAAGCACCGAGTCATG
AAgaggaaattgaaaaagaaatgttGACGTAGTTAAACTGCACCACAAAT
ATTGGTCCAACTAGATCCATTAGACTATTGCAAATCTAGGAAAGCAACAA
ATATgaggaatgaaattaacaatgAAATCCTAACTAATGTAGTTTTAGAA
TTGCACCATAACATTTTATCGCTGACAGCCCGATAGAGGAAATAAATatc
aacccagctggcacacaacgttgttttaacgttcaagtaacgttatttgg
acgttatgaatgtcaaatggacgttgttttgacgttgtgtgccggctggg
aatGGTCTATCTCAGTTGAAAGCCTGGGGTAGGGGTACTTAGGAAATTGG
GTGCAGGTATGTGAGCCTTAAGGGTCCCCgtccctttttcacactctTGA
AAGTCCCTGTACagaaaccattaaaaagaaaactcTGTATGGgtcccaaa
attacgaaaataaaaaattgattctttcaaagggtcataaatttttgaaa
attggactaagctttgaaatttttggctaaaacttttgggaaatagtctc
tctactcttgtctcccgaatagacgcggggggggggtccgaataagcagg
ggggtaggaaaattttctaaattctaatatgCGGGGTGgatggagggggg
ggggggggtaatttgaagacataattttttttgactgatatcaatttcaa
caacaaaagtgAAACTTTAACAAAAGAACACGTAAAaatataagaaccaa
tactaacaaaaagcatCGACCTCTAACCGTTAGAAGTCGatgcaaaaagg
aaaattttaacaagtttgaggtctatctacactgtaataaaaaatttaat
tattcaaatttaatcagcgggggggggtcttaataagagcgggggatgGA
TCTTTTTTGCTCTTAagaattagcggggggacgtctattcgggagacaag
agtacggGTGGCGAAAACGTCACAAAATTTTCAGTCTCTCCAAGaatcaa
tttttgaactttcgCTCGGATATTGTGAAAGAAAGCATCGATGTTGATAG
CAAGGACATTGAAAATAGAATCTAGTTGAATCTAATCAACGTATGGCAAA
TGATGCAATATCTTGCCTATCTGTTTTTCATGAAAACAGAACCAAATATG
AGCAATGCAATTGCGGCGGAaacggggagactggggagacttcagcctgc
CCAatttttacggttgttccaccGATCCTGCTATGCAAGGGCTAACAGAA
AAATGATCCATTGAATTTTACGGCAgtaaaaattctaataaattCTCTAG
CCaaaaaaaCTAAACGTACATTGTTGAAAAAGAGAGGATTGTGTCTAAGT
AATTTTGCATAGATTTCTAAGATTAGCTGTAATCTCGTGAGTTGGTGggc
ttaatttttttaaagctaaTTTAAGaccaatgggctattccagaaaaaat
ttgtaccccctatgttgaggagatttttttttaaaaaagtgacCCCCTGC
ATTTGTTCCCATTTTTCAGGACCTCCTTGAATTTGTTTCTCTCAtttctt
tggaccaccctggattttgaacccgattttactgaccaccctggatatta
tcattcaaaaaaccagaCCAACATAGGGGGGCACAGACTATTTTTGGAAT
AGTCCGATTTTAGGtgtatttgtattttaatgGTCTTATAAAACACTAAG
AGTTGAtgtaaagtttcttttttgggacactttaaattttgaaaaaatat
tttgaattaaatttcagcatttaaattattgaattacggtaaaatatata
tttaattatttttactaGAGTCGATATGATAatgttatataaaaaataat
taacaaaaattgAGCAGTACGAGCAGTATTGAGCAGAGCAGTACGAATAA
AACCAGTTTTGTTTTCCACTATAGAGGTCTTTCAATACTAATAGTGTTGA
GAATAAGATTTTACTCTTTTAAGCTTCTCAGCCCTGTGAAATAGGTCTGT
TTTGGCTATTTTGGTTAATCTCTGCCGAGCCCAGATTTATAATAAGCGAA
GTATCATTTATAATAAGCGAAGtaaaaatattctaaagagtTTCATATCA
TTATGATTTTTGAACCAGTTGTAAAGCTTTTCATAtgcatttttcttctt
taataaTTCGCAATTCTATGAAAATCTTCAATCATTTAGACAAATTTCTT
TGAGAATATCTTACCAAC

Coding sequence (CDS) from alignment at sc0000006_pilon:252147..256114+

>MSTRG.1207.1.p1 ID=MSTRG.1207.1.p1|Name=MSTRG.1207.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1182bp|location=Sequence derived from alignment at sc0000006_pilon:252147..256114+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTGGCCAAATACCTTGTGAAGTTACCGATCAAGTGTTCCCAATCAT
CTTATGCACACTTTCAATACTTCTTACCATAATATCCGTGCCGTTAAACG
GAGTCGTACTCGTTGCGATCATCaagaacaaaaaatttcatagtAATTTc
tatttcatcattttcaacaCGACTGCTGCTGATTTTCTAATAGGTGCTAT
ATTATGTCCCTTATCGATTAACATTCACGTGCGTGAGATTCGCGAAGAGC
CCGTAAACGGGACAGTGGACACGTTATTCCATTTTGGTTTATTCACATTA
GCCATGGTTTCAGTTTTAACAATCACTGTGCTCAGTATTGACCGAATGAT
TAGTTTAAAGTTTTCATCACAATACCGAGTCATGAAGAAGATAAATTTCA
TAGCAAGCTTATTAGCTGTGTGGGTCGTAACAGGTGGTCTATCGCCGATC
TATTTCATTCTCGATTACTCATTGTTCCTGACAATTATATCGCTATCGGC
TGTCCTAGTCACAGCAGTTATGATGTTCATAACATATATGTTCTACAGAG
CTCAACTACGTCGCGCTTTCATTAGGTCGCATTCAACGCCAAAAGATCCA
GAAGTCGAAATAAACGATGCGGATGAAATCGAAGACCAGGGACCTGGCAC
TATAAGATACGTCTCCAGCGACTCAGGAGGGTCCTCGTCTCGGCCGTCCA
TTCCTATGAGTATAAAGCGTAAATTTACACGATCCAAAAAGGACAGCATC
ACTTCAATAACCTCAGCACAGAAGCTGGACGAAGATTACCAGGTTTATCT
AATGGAGAAGCGAGCTACAGACACTTTCTTTTACATGATGCTCATCTTCT
TCCTATGTTATATACCAGTTGTCATCATAAGTTTAACTATCCATTTATCG
AAAGGACGATATGGTTGTTACACTATCAACTTACTACAAGAGTGTATAGC
TATACTATGTATCATCAGCTCTGTCTGCAAAACTATAGTATTTGTTGCAC
GTTTAACAGCATTGAGGAAAGCTTGTATTAATTTGTTTATAAGTGATGAA
GAGATGGAACGACGCTGGCGTAAAGAGAGTGTACCGATGGTGCCGAAAAA
GAAGAGGACTCTTAAGGATCGGCTGTTACAAAGGAAAGCACCGAGTCATG
AAgaggaaattgaaaaagaaatgttGACGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1207MSTRG.1207Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1207.1.p1.exon1MSTRG.1207.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1207.1.p1MSTRG.1207.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000006_pilongenomesc0000006_pilon:252147..256114 +