MSTRG.12066.1.p1 (mRNA) -

Overview
NameMSTRG.12066.1.p1
Unique NameMSTRG.12066.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000089_pilon:805332..806968+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12066.1.p1 ID=MSTRG.12066.1.p1|Name=MSTRG.12066.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1637bp|location=Sequence derived from alignment at sc0000089_pilon:805332..806968+ (Clytia hemisphaerica_ch_hm2_pilon)
ACCTCAGTATTATTTGCAacgcaaacagagtggaggaacgtacttaagcg
ttctggagcgcgcgtaacccctttttctaaacattgattttcagcacaaa
gtaataaaaatgagtaAAGTAGACATAGTGGAAAATATTTCAGTCGaaga
tttcgaaacaaaatactTGAATGCGGAGAAACCTGTACTTATCAAGAACT
ACACGAAAGAATGGAAAGCTTTGAATTGGACTTTAGAATCGATGAAAGAG
AAAGCTGGCCATAATGAAGTTTTCGTGCGCCGTAACACCGCTCAAGAATC
GTATAAAATCGGACAAAAATACAACATCCAATCGATGAAATTTGCCAATT
ATATCGATAATTTAATGAAAGGGAACGAGGCATCGAGGACTTCATATTTA
GCCGTTCAAAACATTGGGAGAGCGCTACCAGAACTCAGTAAGGACATCGA
AGTCCCAACGTACGTTAAGAAGCTTCACGGAGGTCCTTTCCTTTGGTTAG
TGCGTAAGGGACATTACGAATTTTGCCATTTCGATCCGGATGATAATTTT
CTGATCGTTTTATCAGGCGAAAAACGAGTGAGGTTATACCCTGCAAAAGA
GTTGATAAACATGTATCCCAATGAGCTTGGATCTAAAGGAAGAACGATTC
AGTCCCGAGTCGATTGTGATTCACCAGATTTTAAAACACATCCGAAGTTC
AATGGTGTCGAATGTTACGAAGTGAgtattttgtttgaattattCGTCGT
CACTTTTTCGAATTGTTTATGAATACTCGCTGCTTGCACCCAGACACCGC
CTCTTACATctgtttgacatttttgaacTCTTTGAACTCACCGATTGAAT
ATTTGCTTATGAATAAATGTAATACTTCTAACTATAAATATCTAATATCC
AAAAATAATCCTGTCGTTGTAAGTCATTGGTGATTGCTTATAGCTCGAGA
TATAGCGCTTGGGCCCCTTGGTAATGAtcaattctttcaatttcagTGTA
CGGTGCGAAGCGGAGAGATGTTGTTCTTCCCTGCTTTTTGGTGGCATCAA
GTGACGTCAGTAGAGCAAACCATCTCCGTCAACATGTTCTTCGGCAATGA
TGGTGAAAATGCTTACGTCAGCAAAATTATGTCCACCAAACAAATGGGGT
GTTTTGAATACTGGTTGCTTAACATTGTTCAACAGAATCTTGATAAACAA
CAGTTTCAGAAAGTGTTGCAATACTTGGATGGAAGTCTTAAGTATTTCTT
GCTCAAACAATGGCACGAGGTTCCAACGGATGAACAAATCGAAAAACTTG
TCGCTCTCATTTTGAATTATTGTGGACTTGATAAAATGCCTGAAAAAGAT
GTTCGACTGAATCATCCTCCTCCTTTGAAAATTCGAGGTCTCTTGTGGAG
GTCTTAATGCAACACCAATCTCCTTCCCTTTCTTTTTTAGTTTACACTAT
TCGCCTGAAAAATAAACTCGTGCAAATTGTGAAAATAGCATTTACCTGCT
TTCCAAGATGTCTTACTCTatgcgtacaaactttcgcgagcagaaacttt
agcgatttttgcgaattttggcctttttcgcgaaagtttatgctcgcgaa
aaattgtcaaaataaatctcaataaaaattggaaatc

Coding sequence (CDS) from alignment at sc0000089_pilon:805332..806968+

>MSTRG.12066.1.p1 ID=MSTRG.12066.1.p1|Name=MSTRG.12066.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2046bp|location=Sequence derived from alignment at sc0000089_pilon:805332..806968+ (Clytia hemisphaerica_ch_hm2_pilon)
atgagtaAAGTAGACATAGTGGAAAATATTTCAGTCGaagatttcgaaac
aaaatactTGAATGCGGAGAAACCTGTACTTATCAAGAACTACACGAAAG
AATGGAAAGCTTTGAATTGGACTTTAGAATCGATGAAAGAGAAAGCTGGC
CATAATGAAGTTTTCGTGCGCCGTAACACCGCTCAAGAATCGTATAAAAT
CGGACAAAAATACAACATCCAATCGATGAAATTTGCCAATTATATCGATA
ATTTAATGAAAGGGAACGAGGCATCGAGGACTTCATATTTAGCCGTTCAA
AACATTGGGAGAGCGCTACCAGAACTCAGTAAGGACATCGAAGTCCCAAC
GTACGTTAAGAAGCTTCACGGAGGTCCTTTCCTTTGGTTAGTGCGTAAGG
GACATTACGAATTTTGCCATTTCGATCCGGATGATAATTTTCTGATCGTT
TTATCAGGCGAAAAACGAGTGAGGTTATACCCTGCAAAAGAGTTGATAAA
CATGTATCCCAATGAGCTTGGATCTAAAGGAAGAACGATTCAGTCCCGAG
TCGATTGTGATTCACCAGATTTTAAAACACATCCGAAGTTCAATGGTGTC
GAATGTTACGAATGTACGGTGCGAAGCGGAGAGATGTTGTTCTTCCCTGC
TTTTTGGTGGCATCAAGTGACGTCAGTAGAGCAAACCATCTCCGTCAACA
TGTTCTTCGGCAATGATGGTGAAAATGCTTACGTCAGCAAAATTATGTCC
ACCAAACAAATGGGGTGTTTTGAATACTGGTTGCTTAACATTGTTCAACA
GAATCTTGATAAACAACAGTTTCAGAAAGTGTTGCAATACTTGGATGGAA
GTCTTAAGTATTTCTTGCTCAAACAATGGCACGAGGTTCCAACGGATGAA
CAAATCGAAAAACTTGTCGCTCTCATTTTGAATTATTGTGGACTTGATAA
AATGCCTGAAAAAGATGTTCGACTGAATCATCCTCCTCCTTTGAAAATTC
GAGGTCTCTTGTGGAGGTCTTAAatgagtaAAGTAGACATAGTGGAAAAT
ATTTCAGTCGaagatttcgaaacaaaatactTGAATGCGGAGAAACCTGT
ACTTATCAAGAACTACACGAAAGAATGGAAAGCTTTGAATTGGACTTTAG
AATCGATGAAAGAGAAAGCTGGCCATAATGAAGTTTTCGTGCGCCGTAAC
ACCGCTCAAGAATCGTATAAAATCGGACAAAAATACAACATCCAATCGAT
GAAATTTGCCAATTATATCGATAATTTAATGAAAGGGAACGAGGCATCGA
GGACTTCATATTTAGCCGTTCAAAACATTGGGAGAGCGCTACCAGAACTC
AGTAAGGACATCGAAGTCCCAACGTACGTTAAGAAGCTTCACGGAGGTCC
TTTCCTTTGGTTAGTGCGTAAGGGACATTACGAATTTTGCCATTTCGATC
CGGATGATAATTTTCTGATCGTTTTATCAGGCGAAAAACGAGTGAGGTTA
TACCCTGCAAAAGAGTTGATAAACATGTATCCCAATGAGCTTGGATCTAA
AGGAAGAACGATTCAGTCCCGAGTCGATTGTGATTCACCAGATTTTAAAA
CACATCCGAAGTTCAATGGTGTCGAATGTTACGAATGTACGGTGCGAAGC
GGAGAGATGTTGTTCTTCCCTGCTTTTTGGTGGCATCAAGTGACGTCAGT
AGAGCAAACCATCTCCGTCAACATGTTCTTCGGCAATGATGGTGAAAATG
CTTACGTCAGCAAAATTATGTCCACCAAACAAATGGGGTGTTTTGAATAC
TGGTTGCTTAACATTGTTCAACAGAATCTTGATAAACAACAGTTTCAGAA
AGTGTTGCAATACTTGGATGGAAGTCTTAAGTATTTCTTGCTCAAACAAT
GGCACGAGGTTCCAACGGATGAACAAATCGAAAAACTTGTCGCTCTCATT
TTGAATTATTGTGGACTTGATAAAATGCCTGAAAAAGATGTTCGACTGAA
TCATCCTCCTCCTTTGAAAATTCGAGGTCTCTTGTGGAGGTCTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12066MSTRG.12066Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12066.1.p1.exon1MSTRG.12066.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12066.1.p1.exon2MSTRG.12066.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12066.1.p1MSTRG.12066.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089_pilongenomesc0000089_pilon:805332..806968 +