MSTRG.12055.3.p1 (mRNA) -

Overview
NameMSTRG.12055.3.p1
Unique NameMSTRG.12055.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000089_pilon:717999..720659-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12055.3.p1 ID=MSTRG.12055.3.p1|Name=MSTRG.12055.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2661bp|location=Sequence derived from alignment at sc0000089_pilon:717999..720659- (Clytia hemisphaerica_ch_hm2_pilon)
GTAAAACGATTAGAATTTCATAATTCTCTGGTGAAAGTTCATTTGTTGCA
TGGGATGAGGTGGGACGATATCTGGGAAAGTAGCTAGTGACCACTGGCCT
GTAGATTCATTTTAGACTATGTATTGATTTGATTCCAGGCATCATTCACT
GAGGAAATGGAGTCACTTTAGCTTCTTTTCTATCAGTTCTTTTCTCTTGT
TAGAGCTACATCTGGTTTGGAATATTTGAAAATTATTGAAATTCAAATTT
TTGCTTAAAACAAAAAAGAAAATAGACATTATGGTCTGAAGGTGATATTA
TAGATACTTTTTTGATACTTTTTAAAGGCTTCTTTGTTCATCTCAACAAT
CATCCAATTTGAGAAATCCGATGATGGACCATGACTTTGATGCTATTTGA
AAGAGCTCTCATAAGAGGAAGGTAATTTGGCAGCAGTGGCTCGTCCGGTA
GTGAATTGAGAAAATGGTCCAATTGATGTTTAAAATTACTTTTGGAGCAG
TTTTTGAGGTTACAGATGGATTGTGGGAGGGCATTAAATAATCTGGGACC
TTCTTCTGACAGGCAACAGGGAGTCTCCCCATATGTTTTTTTTCCTTATG
TTCACCTTTTTTAGATTTTCTACCCAGTCCCTGGTTGTCGTCCTGCTTTC
TTCCAAGAGATTTCCCAGCACCTCACAAATAAGGAACCCTGGTTTGTGTC
ACGTATTTGATTTCTTGGATCTATGGCTACTAAACCAACGGATGAAATTG
AACCAGAAGGGGAACCAAATGAAGACGTACAGATTTGGAAACAAATAGTA
ACAGAGCTATCACTTCAAGCACCGGATCCTCAGATCAAATCTTGTCTTCA
ATTGTACAATCCAGAGAAACCTACAAAATCTATTATCGCTAAACTGACCA
AAAGTTTCAAAAAAGACACAATCAACAATTCACGACACACTTAACTTCCT
GTCAAAACAGGAAGTTGAATCTGCTAACAAGAATGAACTTGTCCAAAAGC
TTTGCCTCAAAGTCAAAAGCTTTTTTCCAGATGTATGCCAGATCTGCAAC
ATGTCCTATGTTATCAAACTCAATGATGAACCCTCTCTCCAGTGTACGTG
CACCATGTGGTCAAGAAGTACACCGAGAGTGCTACCTGAATATTTTGAAA
GATATGAACCTAGTTGATCATAATGAGGCAATACGTGATAGACTTTTCAA
AATTCAATGTCAATCCTGCCAAGAAAACACTGTGTCTTTCACCCATGATA
GTAACACACCAAATCCACCAAGATCAACTGAATCCCAGGAAAAATCTACT
TGGAGTGTAGTAGATGAGGATTATGAGATCAATGCACCAATGACAGAAGA
CGATACTTCCAACACATTAAACCAAACAGCTCGCGGACCACCAAATGAAA
TCAACTTGAACAACAGCAACCAAGAGCAACAACAATCACGCCCAATATCC
TGGATCAAGATCTCAGACCAAATCAAAGACAAATGATCAAATATGTCACA
TAAAAGAAAAATGTAAATATGAACTGAAAGGCCGAGACTGTCAATTTATC
CATCCTAAAGCCTGAACAAAATTGCTCAAATATGGCAACAAACAACCAAG
AGGCTGCAACCTAGGTACCAAGTGCCAAAGCTTCCACCTGAGGATGTGCT
CATCATCTATTACAAGAGGGGAATGCTTTAATCTTGACTGCAAACTCACG
CATGTTTTAAAGGGAACCAAACGACATCAGAAAAAGCAAAACAATCGTAA
TGATGAACCTCAAGATTTTCTCACAATCCTGGACAACTTTCGCACAGGAA
TAATCTCTCTTGTGAACAATTGTTTCAGCAACCAAAACCAACAAATACAA
TTCAGGAACCACAATTTGTCACATCAACCTCAACAAACATTCAATCATCA
GCATCCCCTACATCATCTACCACCCAAGCACCCAACAATGGAACCAACAT
TTCCAAGAAATCTACTGGGACAGTGACTGCCCTTACTGATGCTGACCCGA
CTACCAAAACTACTTCTAAACCTACACTGAATATGTTTTCATTTGTCAAT
ATACAAGGACCTTGCCCACAAACAAAACCTTCATCTGTACCCTACCTCAA
AGATCTTACAAACAGCTCAAACCAACTGTTTTTAGGCTTTTAACCGAAAC
CTGGTTAACGGACAATCTCAAAAAAGGAGAACTTGAGATTGAAAATTACA
ATTTTTTAAAGAAAAACAGAGACAGAGTAAAATCGAAATATGGCAGAGCA
AGCAGAGGCGTTGCATTTTATGTGCATAATGACATTGCACTATTCTTCGA
GCCCATTTTGGAATTCTCGAACGGAGTAAATGAAGCATTGATGCTTTTAT
CAAAAAAATTTAATATTCTTCTGTGTTATCTACAGACAACCCCACAATCC
ACAAACCTGAAGCACCTGAATTACAAGAACTCCTTTCTGCAATGATAGCA
AAAATTGATAGTATTACCATGAAGGTAATAAAGATACAGATGGAGAGAAA
ACGTCTCGGTAATGACCTAAATGGTCGTTGAAATCTTTTATAAATCTATT
CAAAGCGGCCTTTCTTTGATGTACCATCATTGGAAGCAAAAAACATCAAT
TTATAACTTTAAAAGAACAGAAATAGGCCGGTACAATGATTTTGAAAAAT
TTAATTTTGCG

Coding sequence (CDS) from alignment at sc0000089_pilon:717999..720659-

>MSTRG.12055.3.p1 ID=MSTRG.12055.3.p1|Name=MSTRG.12055.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=504bp|location=Sequence derived from alignment at sc0000089_pilon:717999..720659- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAACTTGTCCAAAAGCTTTGCCTCAAAGTCAAAAGCTTTTTTCCAGAT
GTATGCCAGATCTGCAACATGTCCTATGTTATCAAACTCAATGATGAACC
CTCTCTCCAGTGTACGTGCACCATGTGGTCAAGAAGTACACCGAGAGTGC
TACCTGAATATTTTGAAAGATATGAACCTAGTTGATCATAATGAGGCAAT
ACGTGATAGACTTTTCAAAATTCAATGTCAATCCTGCCAAGAAAACACTG
TGTCTTTCACCCATGATAGTAACACACCAAATCCACCAAGATCAACTGAA
TCCCAGGAAAAATCTACTTGGAGTGTAGTAGATGAGGATTATGAGATCAA
TGCACCAATGACAGAAGACGATACTTCCAACACATTAAACCAAACAGCTC
GCGGACCACCAAATGAAATCAACTTGAACAACAGCAACCAAGAGCAACAA
CAATCACGCCCAATATCCTGGATCAAGATCTCAGACCAAATCAAAGACAA
ATGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12055MSTRG.12055Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12055.3.p1MSTRG.12055.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12055.3.p1.exon2MSTRG.12055.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12055.3.p1.exon1MSTRG.12055.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089_pilongenomesc0000089_pilon:717999..720659 -