MSTRG.12053.1.p1 (mRNA) -

Overview
NameMSTRG.12053.1.p1
Unique NameMSTRG.12053.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000089_pilon:707543..709774+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12053.1.p1 ID=MSTRG.12053.1.p1|Name=MSTRG.12053.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2232bp|location=Sequence derived from alignment at sc0000089_pilon:707543..709774+ (Clytia hemisphaerica_ch_hm2_pilon)
ttttgCTCTCTGCAAGGGAGGATGTCTGTTATTATTCTAATCGTTGACCT
TGAGTCGAATGTTATACTGAGGAAAAACATCTTGCAGAAACTTTAAACGA
ATATTCGTTGAAGGAACCTTGTTTGAGATAGTTGGTTGGTTTATAAGTCA
CAATGTTCTTCTTCACTTTAGGTTTGTTGTTATGGCGACTGAGAAATGTG
TCGGCAATGATGTGTCTCCTTGAACATCCTCAATCTTCTTTCATTAGATC
ACAGTTTGGTAAGTTTGTTGATGCCCCTTCTCATCTTTAATAAGGCTATT
ATTATACAGTTTCTGTTTATGGCGTTGTataatttctcaaaagaatTGTT
TTAGAGGGCTTTTTAATTAACAAATTCTCTGAGCATAGTCGGTGAGAATT
TTTTGAGCAAGAAGGCAGGCTATAACCCAGGAAATTCTCTGAGTGACGAT
TTTTCTTCCCGATGTTTTAAAACCTGTGAATCGTTTACAGCGTTTGGCCA
GATTTTCGCTCTTGTTTTCCTCTAGAATGTTTAATAATTACGTGCTGCCA
ACAAATTGGTATACCTTCTCTTATGAGTTAaggtttcaaaatatttctga
cAATTTTGTTTAGTGTTGAGCGGGAAGATCGAAGGAATTGAGGAGAGTGT
TTCTCCTTTCGAACCTCGCAAACTGAATGTCAACATCTACACCATCTACA
AACAACCAGATGACAGTTCCAAAGTGAAAAGAAGTGAGAACTTGGAAGTT
CGTATCCACGATCAGTGGATGAAGAAAGAAGTCCGGGCAGGCGAAGAATA
CCTGTTAGCGGGTGCGCTGTACAACGGACGATATATAGTGACTGGATGTG
ATTGGGTGCAGAAGATGTATTTGTTGAGTCCTGTTCAACGTTGGGGTTTG
AAGAGATATTACCAACGAAACAAAGAATGTGAAGTAAATAGACAGCTCCT
TTTCCAAACTCAGATAACTGAAAGCTAAACATTTACTAGGTTTCTGTTGA
TCCTCTAGCGGAAAGAGTTTCATCTATATAGGTAATATGGGCGCGGAAGT
ATATCTATATGTAGAAccctgcgattcagactaaacaTTTACTGCCATAC
ATAACTGAATCCCAAACACACCCccgtctcacagacccggtgggatttta
tcagccagtgggggtaaaaataatgaaccaaaattcgatggggattggta
ttcccatggtttttatggctggggacttgaagtccattgttttctagcca
gaaaattcaatgCGGATGAaagaaatagcacaatattttacagtgaggGT
TTGCTTATCTGGTTATTTTCAGCAGGGACAAAAATGAGAGTATAACTTTC
CACTtaggacgatattttggccaatttttcttgTGGGAAGGGttctcagt
gggtctgtgaaaaggggtagccatgagaagggggtgtccaAACAGTTATT
GCCATAAATAGCTGAAAGGCTaaaaaaaCAGTTCAAAAAAGACCTTATAA
CTAAAAGAAACCACTATTACTTGAATGAAACTATTCTCTGTGCGATTTTA
CCAAGGTTACGGACTAAGAATCGCTGAATttaaaacaatttcaatttact
tTGAGAAACATCGAAGTCTTAGGTTATTGTGATTCTATTTGaaaactaaa
actttaaaaaaatgaacacgaaaaatctatctcaaaattaaaaatgttct
tttcttttacaGGTGAAAGAAGAAGGATGCGAGAATGGAGAATGCTGCTT
ATGGAAAACTAAAGATCTAGCGGCTGCCGAGGTGAAAGCAGACTGTACAT
CATTGAAAGCGATCTGCATGAAAAGTCCTGGTGGAAAATGTCACTGGTTT
CGGGCGCGTATCGGCCCTTCATGTGTTGAGTAGAGCAGATAGTGCAACAA
ACTGCTGCTGTCAATCACAACCCCCTAATCGAACTTCCCTAAAAGGGACT
GAACGCCACTGTGTGTTTGAACATTATGAATGAGGGCAAGCGAACAATAA
ATGAAAGTCAAGAAAACTCTAAAGGAGGATAATCATAACTAGCGACTTTT
GATTATTCACTTTTATTCGATATTCAGTGTAAAGTTTTTATGGTGGCTAT
GAACCCTTGTATTTATCTAAATCTCCTAAAGAATTCTaaccttgaaaact
aaattttaacctttttcaTAACGGCATCtcaataaatatttattttgttc
ttttgcACAGTGAACTTATTTCATAtagttac

Coding sequence (CDS) from alignment at sc0000089_pilon:707543..709774+

>MSTRG.12053.1.p1 ID=MSTRG.12053.1.p1|Name=MSTRG.12053.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1791bp|location=Sequence derived from alignment at sc0000089_pilon:707543..709774+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTCTTCTTCACTTTAGGTTTGTTGTTATGGCGACTGAGAAATGTGTC
GGCAATGATGTGTCTCCTTGAACATCCTCAATCTTCTTTCATTAGATCAC
AGTTTGTGTTGAGCGGGAAGATCGAAGGAATTGAGGAGAGTGTTTCTCCT
TTCGAACCTCGCAAACTGAATGTCAACATCTACACCATCTACAAACAACC
AGATGACAGTTCCAAAGTGAAAAGAAGTGAGAACTTGGAAGTTCGTATCC
ACGATCAGTGGATGAAGAAAGAAGTCCGGGCAGGCGAAGAATACCTGTTA
GCGGGTGCGCTGTACAACGGACGATATATAGTGACTGGATGTGATTGGGT
GCAGAAGATGTATTTGTTGAGTCCTGTTCAACGTTGGGGTTTGAAGAGAT
ATTACCAACGAAACAAAGAATGTGAAGTGAAAGAAGAAGGATGCGAGAAT
GGAGAATGCTGCTTATGGAAAACTAAAGATCTAGCGGCTGCCGAGGTGAA
AGCAGACTGTACATCATTGAAAGCGATCTGCATGAAAAGTCCTGGTGGAA
AATGTCACTGGTTTCGGGCGCGTATCGGCCCTTCATGTGTTGAGTAGATG
TTCTTCTTCACTTTAGGTTTGTTGTTATGGCGACTGAGAAATGTGTCGGC
AATGATGTGTCTCCTTGAACATCCTCAATCTTCTTTCATTAGATCACAGT
TTGTGTTGAGCGGGAAGATCGAAGGAATTGAGGAGAGTGTTTCTCCTTTC
GAACCTCGCAAACTGAATGTCAACATCTACACCATCTACAAACAACCAGA
TGACAGTTCCAAAGTGAAAAGAAGTGAGAACTTGGAAGTTCGTATCCACG
ATCAGTGGATGAAGAAAGAAGTCCGGGCAGGCGAAGAATACCTGTTAGCG
GGTGCGCTGTACAACGGACGATATATAGTGACTGGATGTGATTGGGTGCA
GAAGATGTATTTGTTGAGTCCTGTTCAACGTTGGGGTTTGAAGAGATATT
ACCAACGAAACAAAGAATGTGAAGTGAAAGAAGAAGGATGCGAGAATGGA
GAATGCTGCTTATGGAAAACTAAAGATCTAGCGGCTGCCGAGGTGAAAGC
AGACTGTACATCATTGAAAGCGATCTGCATGAAAAGTCCTGGTGGAAAAT
GTCACTGGTTTCGGGCGCGTATCGGCCCTTCATGTGTTGAGTAGATGTTC
TTCTTCACTTTAGGTTTGTTGTTATGGCGACTGAGAAATGTGTCGGCAAT
GATGTGTCTCCTTGAACATCCTCAATCTTCTTTCATTAGATCACAGTTTG
TGTTGAGCGGGAAGATCGAAGGAATTGAGGAGAGTGTTTCTCCTTTCGAA
CCTCGCAAACTGAATGTCAACATCTACACCATCTACAAACAACCAGATGA
CAGTTCCAAAGTGAAAAGAAGTGAGAACTTGGAAGTTCGTATCCACGATC
AGTGGATGAAGAAAGAAGTCCGGGCAGGCGAAGAATACCTGTTAGCGGGT
GCGCTGTACAACGGACGATATATAGTGACTGGATGTGATTGGGTGCAGAA
GATGTATTTGTTGAGTCCTGTTCAACGTTGGGGTTTGAAGAGATATTACC
AACGAAACAAAGAATGTGAAGTGAAAGAAGAAGGATGCGAGAATGGAGAA
TGCTGCTTATGGAAAACTAAAGATCTAGCGGCTGCCGAGGTGAAAGCAGA
CTGTACATCATTGAAAGCGATCTGCATGAAAAGTCCTGGTGGAAAATGTC
ACTGGTTTCGGGCGCGTATCGGCCCTTCATGTGTTGAGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12053MSTRG.12053Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12053.1.p1MSTRG.12053.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12053.1.p1.exon1MSTRG.12053.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12053.1.p1.exon2MSTRG.12053.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12053.1.p1.exon3MSTRG.12053.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089_pilongenomesc0000089_pilon:707543..709774 +