MSTRG.12047.16.p1 (mRNA) -

Overview
NameMSTRG.12047.16.p1
Unique NameMSTRG.12047.16.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000089_pilon:696248..699152+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12047.16.p1 ID=MSTRG.12047.16.p1|Name=MSTRG.12047.16.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2905bp|location=Sequence derived from alignment at sc0000089_pilon:696248..699152+ (Clytia hemisphaerica_ch_hm2_pilon)
AGAATCAGTTTATGCCTAGTagcaaattatttgaaaaattataaaaaatg
gaGGACATGGATTGGCTagatgaaagtgaaaatttagaaaatgatttcaa
ttctttgaaacataaacatacaaaggtaaatacttttttaagaatttttg
attttctctcaGTCTAAGCACTTTGTtgattcaagttcattttggaagaa
acaatGTCTTGTAAAAATCAGTACCAATGATAAATAATCAATTGTATGTC
TAGGCCTTCATGCTGCTTCAGCTTCTTGTTTATATATGATGCACACTTCT
TTATAAGATTAGTGTTTTTTGGCTGATGGTGGAGCATTCTATCAAATCTA
TCAAAGATGTCTGATGAAGTTTGCATAGAGTTTTCATATTTCACAAATAA
AATGTGCTTTAATAACACAACATTACagtaattcttttgaaaaaatgtta
ttttattatATAAGGATGGATTTCGTGAAGGAATTTCCCAGGGCCAAGAT
TACATTCTCCAGACTGCATTCAACGAAGGTTTCAAATCATctggcatatt
tttcgaaaaactttCTCATTTCAGAGGGAAAGTCAGGTAAGTTAATAACT
ATACAAACTATAAAGCTCTTGAAAAAGACTTGATGATGTTACTGTTTTAC
TCCACTTTGTTTCTTCCCCTTCCTCTGCCATGTATctgtttttcaattat
ttataCTTCACATTAAATAAATGGTAGCTGTATcaaatatttgtttattt
tgtttgttttagtgCGATATATATGTTTCTTATGAATCAGCCTGCTTTTG
TGAAAGAAACCGGAGATCAATTTGAAGCTTTGATCACCAAGcttgaagat
tttgaaaataaccAAAGTCATATTGATGAAATAGCTGCTCAGAATAACAG
ACGGAAGACAGAAGAAAGAGACTTGGGAGGTCATAAGAACACAAGGCATG
ATTCTATGGATAACACTACAATAGATACACTTATTGATGGCTTTGATAAT
ATGCAACCCCAAAATGATAATTGTTCTAGCGAGCAAAAAGAACTTAAAAG
AGGATGCAGTGACTGTAATTGTAAAGAGCAAGCCAATTCACCCCCCTCGA
AAACACATGATACTAGTTATATTTACGAAAACTCCCAGAACATCTTTGAC
AATAAATTAAAGGGAGATTTAGATGAACATATTGGAACTATCAAGAATTT
AATTGAACATGAAATGACTTTGAtaatgacaaattttgattccgatacaa
aaaatcaaattataaaatgtttaaaaagtattgaaaaataGGCATTGTTA
TTATTTCAAGACAAGACTTGCATTCCCATATAAATATAGCTAATATAAAC
AATGTTTGGTAATGTCGCTTTTATTGCCAGTGGTGGTGAACAGTTTCTTG
TCTCTAATACATAACAACACATGCcccttttcaatattttattatataCT
TATCAGTTAATGAAGGTCGAAAACACATATaataatttgttaaaaaaata
aaccacTTCTCTTGTGTTATTTACAtaatattcgaatatttcttttgaTC
TTACTCAGAAACACGTAGTGCCGATTCTTCTCGGAGCAAACCACTTATTT
GTGCACTGTTTGTTTTCACAGATGTTTCATTGCTTTGACATTAAAGGTCT
AGTTCTCTAACATGTGTGTTTATTTTTTGCTACAACAAGCTTTAGAGCAA
GCAGGTGCGCAAGTTGGAGCACAAGTTGGACCACATGGCATTGGTGGAGG
TGGTGGAGCTGGAAGGTTGATGACTGTTGGTGGAAGGTTGACGTGTTGGC
ATGGTGGTGCAGCGCAAGGGGCTGGGGCTGGTGGAGCACATGGTGGGGCG
GCACATGGCATAggTggTggTGCGCATGGTGGGGAGGGAAAGGTGTGGTG
CGCATGGTGGGGCAGCACatggcataggtggtggtgcacatggaggggca
gcacatggcataggtggtggtgcacatggtggagcagcgcatggcatagg
tggtggtgcgcatggtggggcggcacaaggcataggtggtggtgcacatg
gtggggctgcacatggcatggccattggcattggtggaggcatgcatggt
ggagctgcacatggcatgggtggAGGAGGTGGTGCGCAACAGCTTGGTCG
GCAAGCGGGGTAGCAAGCTCTTGGACATCCAGCAGGGCATGGTGGGGGAG
CTCGAGCAGGTGGTGGGAGAGCAGGTCTACAACAAGCTGGTGCACAAGAT
GGTTGACACATAGGCATTGGTGGTGGTGGAGGAGGGGGCATGCAACATGC
TGGTGCACATGAGGGTTGGCACATAGGCATAGGGGGTGGAGGTGGTGGCA
TGCAACAAGCAGGAGCACAAGAGGGCTGACAAGCtggcataggtggtggg
gcacatggtggggcggcacatggcatgggtggtggggcacatggaggtgc
agcacatggcatAGGCATAGGCATTGGTGGTGGGGCACATGGTGGAGCAG
CGCAAGGCATAGGTGGTGGTGCACATGGTGGAGCAgcacatggcataggt
ggtggggcacatggaggtgcagcacatggcatgggtggtggggcacatgg
aggTgcagcacatggcatgggtgtggggcatggaggtgcaGCACATGGCA
TAGGGGGGGGTCGAGGTGGAGCGTTACAACACCCTGGCATAGCTTGACAT
TGTGATGGACAAGGCATAGGTGCAGCAGGTTGTGCAGCGATCATGGATGA
CCAATGACTACAGATTGGTGCGCAGCCAAAGGCTGGCAtaggtggtggtg
gtggtggtggaggtggtgCAGCGCAGCAGCTTGGCTGGCAGGCTGGTGCA
CATGCGGCAGCACATCCCATTccacatgggtttgcacttctCTTCTCGAT
CTCtt

Coding sequence (CDS) from alignment at sc0000089_pilon:696248..699152+

>MSTRG.12047.16.p1 ID=MSTRG.12047.16.p1|Name=MSTRG.12047.16.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2187bp|location=Sequence derived from alignment at sc0000089_pilon:696248..699152+ (Clytia hemisphaerica_ch_hm2_pilon)
atggaGGACATGGATTGGCTagatgaaagtgaaaatttagaaaatgattt
caattctttgaaacataaacatacaaagGATGGATTTCGTGAAGGAATTT
CCCAGGGCCAAGATTACATTCTCCAGACTGCATTCAACGAAGGTTTCAAA
TCATctggcatatttttcgaaaaactttCTCATTTCAGAGGGAAAGTCAG
tgCGATATATATGTTTCTTATGAATCAGCCTGCTTTTGTGAAAGAAACCG
GAGATCAATTTGAAGCTTTGATCACCAAGcttgaagattttgaaaataac
cAAAGTCATATTGATGAAATAGCTGCTCAGAATAACAGACGGAAGACAGA
AGAAAGAGACTTGGGAGGTCATAAGAACACAAGGCATGATTCTATGGATA
ACACTACAATAGATACACTTATTGATGGCTTTGATAATATGCAACCCCAA
AATGATAATTGTTCTAGCGAGCAAAAAGAACTTAAAAGAGGATGCAGTGA
CTGTAATTGTAAAGAGCAAGCCAATTCACCCCCCTCGAAAACACATGATA
CTAGTTATATTTACGAAAACTCCCAGAACATCTTTGACAATAAATTAAAG
GGAGATTTAGATGAACATATTGGAACTATCAAGAATTTAATTGAACATGA
AATGACTTTGAtaatgacaaattttgattccgatacaaaaaatcaaatta
taaaatgtttaaaaagtattgaaaaataGatggaGGACATGGATTGGCTa
gatgaaagtgaaaatttagaaaatgatttcaattctttgaaacataaaca
tacaaagGATGGATTTCGTGAAGGAATTTCCCAGGGCCAAGATTACATTC
TCCAGACTGCATTCAACGAAGGTTTCAAATCATctggcatatttttcgaa
aaactttCTCATTTCAGAGGGAAAGTCAGtgCGATATATATGTTTCTTAT
GAATCAGCCTGCTTTTGTGAAAGAAACCGGAGATCAATTTGAAGCTTTGA
TCACCAAGcttgaagattttgaaaataaccAAAGTCATATTGATGAAATA
GCTGCTCAGAATAACAGACGGAAGACAGAAGAAAGAGACTTGGGAGGTCA
TAAGAACACAAGGCATGATTCTATGGATAACACTACAATAGATACACTTA
TTGATGGCTTTGATAATATGCAACCCCAAAATGATAATTGTTCTAGCGAG
CAAAAAGAACTTAAAAGAGGATGCAGTGACTGTAATTGTAAAGAGCAAGC
CAATTCACCCCCCTCGAAAACACATGATACTAGTTATATTTACGAAAACT
CCCAGAACATCTTTGACAATAAATTAAAGGGAGATTTAGATGAACATATT
GGAACTATCAAGAATTTAATTGAACATGAAATGACTTTGAtaatgacaaa
ttttgattccgatacaaaaaatcaaattataaaatgtttaaaaagtattg
aaaaataGatggaGGACATGGATTGGCTagatgaaagtgaaaatttagaa
aatgatttcaattctttgaaacataaacatacaaagGATGGATTTCGTGA
AGGAATTTCCCAGGGCCAAGATTACATTCTCCAGACTGCATTCAACGAAG
GTTTCAAATCATctggcatatttttcgaaaaactttCTCATTTCAGAGGG
AAAGTCAGtgCGATATATATGTTTCTTATGAATCAGCCTGCTTTTGTGAA
AGAAACCGGAGATCAATTTGAAGCTTTGATCACCAAGcttgaagattttg
aaaataaccAAAGTCATATTGATGAAATAGCTGCTCAGAATAACAGACGG
AAGACAGAAGAAAGAGACTTGGGAGGTCATAAGAACACAAGGCATGATTC
TATGGATAACACTACAATAGATACACTTATTGATGGCTTTGATAATATGC
AACCCCAAAATGATAATTGTTCTAGCGAGCAAAAAGAACTTAAAAGAGGA
TGCAGTGACTGTAATTGTAAAGAGCAAGCCAATTCACCCCCCTCGAAAAC
ACATGATACTAGTTATATTTACGAAAACTCCCAGAACATCTTTGACAATA
AATTAAAGGGAGATTTAGATGAACATATTGGAACTATCAAGAATTTAATT
GAACATGAAATGACTTTGAtaatgacaaattttgattccgatacaaaaaa
tcaaattataaaatgtttaaaaagtattgaaaaataG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12047MSTRG.12047Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12047.16.p1MSTRG.12047.16.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12047.16.p1.exon1MSTRG.12047.16.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12047.16.p1.exon2MSTRG.12047.16.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12047.16.p1.exon3MSTRG.12047.16.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12047.16.p1.exon4MSTRG.12047.16.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12047.16.p1.exon5MSTRG.12047.16.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089_pilongenomesc0000089_pilon:696248..699152 +