MSTRG.12047.14.p1 (mRNA) -

Overview
NameMSTRG.12047.14.p1
Unique NameMSTRG.12047.14.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000089_pilon:696247..699152+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12047.14.p1 ID=MSTRG.12047.14.p1|Name=MSTRG.12047.14.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2906bp|location=Sequence derived from alignment at sc0000089_pilon:696247..699152+ (Clytia hemisphaerica_ch_hm2_pilon)
TAGAATCAGTTTATGCCTAGTagcaaattatttgaaaaattataaaaaat
ggaGGACATGGATTGGCTagatgaaagtgaaaatttagaaaatgatttca
attctttgaaacataaacatacaaaggtaaatacttttttaagaattttt
gattttctctcaGTCTAAGCACTTTGTtgattcaagttcattttggaaga
aacaatGTCTTGTAAAAATCAGTACCAATGATAAATAATCAATTGTATGT
CTAGGCCTTCATGCTGCTTCAGCTTCTTGTTTATATATGATGCACACTTC
TTTATAAGATTAGTGTTTTTTGGCTGATGGTGGAGCATTCTATCAAATCT
ATCAAAGATGTCTGATGAAGTTTGCATAGAGTTTTCATATTTCACAAATA
AAATGTGCTTTAATAACACAACATTACagtaattcttttgaaaaaatgtt
attttattatATAAGGATGGATTTCGTGAAGGAATTTCCCAGGGCCAAGA
TTACATTCTCCAGACTGCATTCAACGAAGGTTTCAAATCATctggcatat
ttttcgaaaaactttCTCATTTCAGAGGGAAAGTCAGGTAAGTTAATAAC
TATACAAACTATAAAGCTCTTGAAAAAGACTTGATGATGTTACTGTTTTA
CTCCACTTTGTTTCTTCCCCTTCCTCTGCCATGTATctgtttttcaatta
tttataCTTCACATTAAATAAATGGTAGCTGTATcaaatatttgtttatt
ttgtttgttttagtgCGATATATATGTTTCTTATGAATCAGCCTGCTTTT
GTGAAAGAAACCGGAGATCAATTTGAAGCTTTGATCACCAAGcttgaaga
ttttgaaaataaccAAAGTCATATTGATGAAATAGCTGCTCAGAATAACA
GACGGAAGACAGAAGAAAGAGACTTGGGAGGTCATAAGAACACAAGGCAT
GATTCTATGGATAACACTACAATAGATACACTTATTGATGGCTTTGATAA
TATGCAACCCCAAAATGATAATTGTTCTAGCGAGCAAAAAGAACTTAAAA
GAGGATGCAGTGACTGTAATTGTAAAGAGCAAGCCAATTCACCCCCCTCG
AAAACACATGATACTAGTTATATTTACGAAAACTCCCAGAACATCTTTGA
CAATAAATTAAAGGGAGATTTAGATGAACATATTGGAACTATCAAGAATT
TAATTGAACATGAAATGACTTTGAtaatgacaaattttgattccgataca
aaaaatcaaattataaaatgtttaaaaagtattgaaaaataGGCATTGTT
ATTATTTCAAGACAAGACTTGCATTCCCATATAAATATAGCTAATATAAA
CAATGTTTGGTAATGTCGCTTTTATTGCCAGTGGTGGTGAACAGTTTCTT
GTCTCTAATACATAACAACACATGCcccttttcaatattttattatataC
TTATCAGTTAATGAAGGTCGAAAACACATATaataatttgttaaaaaaat
aaaccacTTCTCTTGTGTTATTTACAtaatattcgaatatttcttttgaT
CTTACTCAGAAACACGTAGTGCCGATTCTTCTCGGAGCAAACCACTTATT
TGTGCACTGTTTGTTTTCACAGATGTTTCATTGCTTTGACATTAAAGGTC
TAGTTCTCTAACATGTGTGTTTATTTTTTGCTACAACAAGCTTTAGAGCA
AGCAGGTGCGCAAGTTGGAGCACAAGTTGGACCACATGGCATTGGTGGAG
GTGGTGGAGCTGGAAGGTTGATGACTGTTGGTGGAAGGTTGACGTGTTGG
CATGGTGGTGCAGCGCAAGGGGCTGGGGCTGGTGGAGCACATGGTGGGGC
GGCACATGGCATAggTggTggTGCGCATGGTGGGGAGGGAAAGGTGTGGT
GCGCATGGTGGGGCAGCACatggcataggtggtggtgcacatggaggggc
agcacatggcataggtggtggtgcacatggtggagcagcgcatggcatag
gtggtggtgcgcatggtggggcggcacaaggcataggtggtggtgcacat
ggtggggctgcacatggcatggccattggcattggtggaggcatgcatgg
tggagctgcacatggcatgggtggAGGAGGTGGTGCGCAACAGCTTGGTC
GGCAAGCGGGGTAGCAAGCTCTTGGACATCCAGCAGGGCATGGTGGGGGA
GCTCGAGCAGGTGGTGGGAGAGCAGGTCTACAACAAGCTGGTGCACAAGA
TGGTTGACACATAGGCATTGGTGGTGGTGGAGGAGGGGGCATGCAACATG
CTGGTGCACATGAGGGTTGGCACATAGGCATAGGGGGTGGAGGTGGTGGC
ATGCAACAAGCAGGAGCACAAGAGGGCTGACAAGCtggcataggtggtgg
ggcacatggtggggcggcacatggcatgggtggtggggcacatggaggtg
cagcacatggcatAGGCATAGGCATTGGTGGTGGGGCACATGGTGGAGCA
GCGCAAGGCATAGGTGGTGGTGCACATGGTGGAGCAgcacatggcatagg
tggtggggcacatggaggtgcagcacatggcatgggtggtggggcacatg
gaggTgcagcacatggcatgggtgtggggcatggaggtgcaGCACATGGC
ATAGGGGGGGGTCGAGGTGGAGCGTTACAACACCCTGGCATAGCTTGACA
TTGTGATGGACAAGGCATAGGTGCAGCAGGTTGTGCAGCGATCATGGATG
ACCAATGACTACAGATTGGTGCGCAGCCAAAGGCTGGCAtaggtggtggt
ggtggtggtggaggtggtgCAGCGCAGCAGCTTGGCTGGCAGGCTGGTGC
ACATGCGGCAGCACATCCCATTccacatgggtttgcacttctCTTCTCGA
TCTCtt

Coding sequence (CDS) from alignment at sc0000089_pilon:696247..699152+

>MSTRG.12047.14.p1 ID=MSTRG.12047.14.p1|Name=MSTRG.12047.14.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2187bp|location=Sequence derived from alignment at sc0000089_pilon:696247..699152+ (Clytia hemisphaerica_ch_hm2_pilon)
atggaGGACATGGATTGGCTagatgaaagtgaaaatttagaaaatgattt
caattctttgaaacataaacatacaaagGATGGATTTCGTGAAGGAATTT
CCCAGGGCCAAGATTACATTCTCCAGACTGCATTCAACGAAGGTTTCAAA
TCATctggcatatttttcgaaaaactttCTCATTTCAGAGGGAAAGTCAG
tgCGATATATATGTTTCTTATGAATCAGCCTGCTTTTGTGAAAGAAACCG
GAGATCAATTTGAAGCTTTGATCACCAAGcttgaagattttgaaaataac
cAAAGTCATATTGATGAAATAGCTGCTCAGAATAACAGACGGAAGACAGA
AGAAAGAGACTTGGGAGGTCATAAGAACACAAGGCATGATTCTATGGATA
ACACTACAATAGATACACTTATTGATGGCTTTGATAATATGCAACCCCAA
AATGATAATTGTTCTAGCGAGCAAAAAGAACTTAAAAGAGGATGCAGTGA
CTGTAATTGTAAAGAGCAAGCCAATTCACCCCCCTCGAAAACACATGATA
CTAGTTATATTTACGAAAACTCCCAGAACATCTTTGACAATAAATTAAAG
GGAGATTTAGATGAACATATTGGAACTATCAAGAATTTAATTGAACATGA
AATGACTTTGAtaatgacaaattttgattccgatacaaaaaatcaaatta
taaaatgtttaaaaagtattgaaaaataGatggaGGACATGGATTGGCTa
gatgaaagtgaaaatttagaaaatgatttcaattctttgaaacataaaca
tacaaagGATGGATTTCGTGAAGGAATTTCCCAGGGCCAAGATTACATTC
TCCAGACTGCATTCAACGAAGGTTTCAAATCATctggcatatttttcgaa
aaactttCTCATTTCAGAGGGAAAGTCAGtgCGATATATATGTTTCTTAT
GAATCAGCCTGCTTTTGTGAAAGAAACCGGAGATCAATTTGAAGCTTTGA
TCACCAAGcttgaagattttgaaaataaccAAAGTCATATTGATGAAATA
GCTGCTCAGAATAACAGACGGAAGACAGAAGAAAGAGACTTGGGAGGTCA
TAAGAACACAAGGCATGATTCTATGGATAACACTACAATAGATACACTTA
TTGATGGCTTTGATAATATGCAACCCCAAAATGATAATTGTTCTAGCGAG
CAAAAAGAACTTAAAAGAGGATGCAGTGACTGTAATTGTAAAGAGCAAGC
CAATTCACCCCCCTCGAAAACACATGATACTAGTTATATTTACGAAAACT
CCCAGAACATCTTTGACAATAAATTAAAGGGAGATTTAGATGAACATATT
GGAACTATCAAGAATTTAATTGAACATGAAATGACTTTGAtaatgacaaa
ttttgattccgatacaaaaaatcaaattataaaatgtttaaaaagtattg
aaaaataGatggaGGACATGGATTGGCTagatgaaagtgaaaatttagaa
aatgatttcaattctttgaaacataaacatacaaagGATGGATTTCGTGA
AGGAATTTCCCAGGGCCAAGATTACATTCTCCAGACTGCATTCAACGAAG
GTTTCAAATCATctggcatatttttcgaaaaactttCTCATTTCAGAGGG
AAAGTCAGtgCGATATATATGTTTCTTATGAATCAGCCTGCTTTTGTGAA
AGAAACCGGAGATCAATTTGAAGCTTTGATCACCAAGcttgaagattttg
aaaataaccAAAGTCATATTGATGAAATAGCTGCTCAGAATAACAGACGG
AAGACAGAAGAAAGAGACTTGGGAGGTCATAAGAACACAAGGCATGATTC
TATGGATAACACTACAATAGATACACTTATTGATGGCTTTGATAATATGC
AACCCCAAAATGATAATTGTTCTAGCGAGCAAAAAGAACTTAAAAGAGGA
TGCAGTGACTGTAATTGTAAAGAGCAAGCCAATTCACCCCCCTCGAAAAC
ACATGATACTAGTTATATTTACGAAAACTCCCAGAACATCTTTGACAATA
AATTAAAGGGAGATTTAGATGAACATATTGGAACTATCAAGAATTTAATT
GAACATGAAATGACTTTGAtaatgacaaattttgattccgatacaaaaaa
tcaaattataaaatgtttaaaaagtattgaaaaataG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12047MSTRG.12047Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12047.14.p1MSTRG.12047.14.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12047.14.p1.exon1MSTRG.12047.14.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12047.14.p1.exon2MSTRG.12047.14.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12047.14.p1.exon3MSTRG.12047.14.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12047.14.p1.exon4MSTRG.12047.14.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12047.14.p1.exon5MSTRG.12047.14.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089_pilongenomesc0000089_pilon:696247..699152 +