MSTRG.12047.13.p2 (mRNA) -

Overview
NameMSTRG.12047.13.p2
Unique NameMSTRG.12047.13.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000089_pilon:696242..699152+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12047.13.p2 ID=MSTRG.12047.13.p2|Name=MSTRG.12047.13.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2911bp|location=Sequence derived from alignment at sc0000089_pilon:696242..699152+ (Clytia hemisphaerica_ch_hm2_pilon)
ATTCTTAGAATCAGTTTATGCCTAGTagcaaattatttgaaaaattataa
aaaatggaGGACATGGATTGGCTagatgaaagtgaaaatttagaaaatga
tttcaattctttgaaacataaacatacaaaggtaaatacttttttaagaa
tttttgattttctctcaGTCTAAGCACTTTGTtgattcaagttcattttg
gaagaaacaatGTCTTGTAAAAATCAGTACCAATGATAAATAATCAATTG
TATGTCTAGGCCTTCATGCTGCTTCAGCTTCTTGTTTATATATGATGCAC
ACTTCTTTATAAGATTAGTGTTTTTTGGCTGATGGTGGAGCATTCTATCA
AATCTATCAAAGATGTCTGATGAAGTTTGCATAGAGTTTTCATATTTCAC
AAATAAAATGTGCTTTAATAACACAACATTACagtaattcttttgaaaaa
atgttattttattatATAAGGATGGATTTCGTGAAGGAATTTCCCAGGGC
CAAGATTACATTCTCCAGACTGCATTCAACGAAGGTTTCAAATCATctgg
catatttttcgaaaaactttCTCATTTCAGAGGGAAAGTCAGGTAAGTTA
ATAACTATACAAACTATAAAGCTCTTGAAAAAGACTTGATGATGTTACTG
TTTTACTCCACTTTGTTTCTTCCCCTTCCTCTGCCATGTATctgtttttc
aattatttataCTTCACATTAAATAAATGGTAGCTGTATcaaatatttgt
ttattttgtttgttttagtgCGATATATATGTTTCTTATGAATCAGCCTG
CTTTTGTGAAAGAAACCGGAGATCAATTTGAAGCTTTGATCACCAAGctt
gaagattttgaaaataaccAAAGTCATATTGATGAAATAGCTGCTCAGAA
TAACAGACGGAAGACAGAAGAAAGAGACTTGGGAGGTCATAAGAACACAA
GGCATGATTCTATGGATAACACTACAATAGATACACTTATTGATGGCTTT
GATAATATGCAACCCCAAAATGATAATTGTTCTAGCGAGCAAAAAGAACT
TAAAAGAGGATGCAGTGACTGTAATTGTAAAGAGCAAGCCAATTCACCCC
CCTCGAAAACACATGATACTAGTTATATTTACGAAAACTCCCAGAACATC
TTTGACAATAAATTAAAGGGAGATTTAGATGAACATATTGGAACTATCAA
GAATTTAATTGAACATGAAATGACTTTGAtaatgacaaattttgattccg
atacaaaaaatcaaattataaaatgtttaaaaagtattgaaaaataGGCA
TTGTTATTATTTCAAGACAAGACTTGCATTCCCATATAAATATAGCTAAT
ATAAACAATGTTTGGTAATGTCGCTTTTATTGCCAGTGGTGGTGAACAGT
TTCTTGTCTCTAATACATAACAACACATGCcccttttcaatattttatta
tataCTTATCAGTTAATGAAGGTCGAAAACACATATaataatttgttaaa
aaaataaaccacTTCTCTTGTGTTATTTACAtaatattcgaatatttctt
ttgaTCTTACTCAGAAACACGTAGTGCCGATTCTTCTCGGAGCAAACCAC
TTATTTGTGCACTGTTTGTTTTCACAGATGTTTCATTGCTTTGACATTAA
AGGTCTAGTTCTCTAACATGTGTGTTTATTTTTTGCTACAACAAGCTTTA
GAGCAAGCAGGTGCGCAAGTTGGAGCACAAGTTGGACCACATGGCATTGG
TGGAGGTGGTGGAGCTGGAAGGTTGATGACTGTTGGTGGAAGGTTGACGT
GTTGGCATGGTGGTGCAGCGCAAGGGGCTGGGGCTGGTGGAGCACATGGT
GGGGCGGCACATGGCATAggTggTggTGCGCATGGTGGGGAGGGAAAGGT
GTGGTGCGCATGGTGGGGCAGCACatggcataggtggtggtgcacatgga
ggggcagcacatggcataggtggtggtgcacatggtggagcagcgcatgg
cataggtggtggtgcgcatggtggggcggcacaaggcataggtggtggtg
cacatggtggggctgcacatggcatggccattggcattggtggaggcatg
catggtggagctgcacatggcatgggtggAGGAGGTGGTGCGCAACAGCT
TGGTCGGCAAGCGGGGTAGCAAGCTCTTGGACATCCAGCAGGGCATGGTG
GGGGAGCTCGAGCAGGTGGTGGGAGAGCAGGTCTACAACAAGCTGGTGCA
CAAGATGGTTGACACATAGGCATTGGTGGTGGTGGAGGAGGGGGCATGCA
ACATGCTGGTGCACATGAGGGTTGGCACATAGGCATAGGGGGTGGAGGTG
GTGGCATGCAACAAGCAGGAGCACAAGAGGGCTGACAAGCtggcataggt
ggtggggcacatggtggggcggcacatggcatgggtggtggggcacatgg
aggtgcagcacatggcatAGGCATAGGCATTGGTGGTGGGGCACATGGTG
GAGCAGCGCAAGGCATAGGTGGTGGTGCACATGGTGGAGCAgcacatggc
ataggtggtggggcacatggaggtgcagcacatggcatgggtggtggggc
acatggaggTgcagcacatggcatgggtgtggggcatggaggtgcaGCAC
ATGGCATAGGGGGGGGTCGAGGTGGAGCGTTACAACACCCTGGCATAGCT
TGACATTGTGATGGACAAGGCATAGGTGCAGCAGGTTGTGCAGCGATCAT
GGATGACCAATGACTACAGATTGGTGCGCAGCCAAAGGCTGGCAtaggtg
gtggtggtggtggtggaggtggtgCAGCGCAGCAGCTTGGCTGGCAGGCT
GGTGCACATGCGGCAGCACATCCCATTccacatgggtttgcacttctCTT
CTCGATCTCtt

Coding sequence (CDS) from alignment at sc0000089_pilon:696242..699152+

>MSTRG.12047.13.p2 ID=MSTRG.12047.13.p2|Name=MSTRG.12047.13.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2187bp|location=Sequence derived from alignment at sc0000089_pilon:696242..699152+ (Clytia hemisphaerica_ch_hm2_pilon)
atggaGGACATGGATTGGCTagatgaaagtgaaaatttagaaaatgattt
caattctttgaaacataaacatacaaagGATGGATTTCGTGAAGGAATTT
CCCAGGGCCAAGATTACATTCTCCAGACTGCATTCAACGAAGGTTTCAAA
TCATctggcatatttttcgaaaaactttCTCATTTCAGAGGGAAAGTCAG
tgCGATATATATGTTTCTTATGAATCAGCCTGCTTTTGTGAAAGAAACCG
GAGATCAATTTGAAGCTTTGATCACCAAGcttgaagattttgaaaataac
cAAAGTCATATTGATGAAATAGCTGCTCAGAATAACAGACGGAAGACAGA
AGAAAGAGACTTGGGAGGTCATAAGAACACAAGGCATGATTCTATGGATA
ACACTACAATAGATACACTTATTGATGGCTTTGATAATATGCAACCCCAA
AATGATAATTGTTCTAGCGAGCAAAAAGAACTTAAAAGAGGATGCAGTGA
CTGTAATTGTAAAGAGCAAGCCAATTCACCCCCCTCGAAAACACATGATA
CTAGTTATATTTACGAAAACTCCCAGAACATCTTTGACAATAAATTAAAG
GGAGATTTAGATGAACATATTGGAACTATCAAGAATTTAATTGAACATGA
AATGACTTTGAtaatgacaaattttgattccgatacaaaaaatcaaatta
taaaatgtttaaaaagtattgaaaaataGatggaGGACATGGATTGGCTa
gatgaaagtgaaaatttagaaaatgatttcaattctttgaaacataaaca
tacaaagGATGGATTTCGTGAAGGAATTTCCCAGGGCCAAGATTACATTC
TCCAGACTGCATTCAACGAAGGTTTCAAATCATctggcatatttttcgaa
aaactttCTCATTTCAGAGGGAAAGTCAGtgCGATATATATGTTTCTTAT
GAATCAGCCTGCTTTTGTGAAAGAAACCGGAGATCAATTTGAAGCTTTGA
TCACCAAGcttgaagattttgaaaataaccAAAGTCATATTGATGAAATA
GCTGCTCAGAATAACAGACGGAAGACAGAAGAAAGAGACTTGGGAGGTCA
TAAGAACACAAGGCATGATTCTATGGATAACACTACAATAGATACACTTA
TTGATGGCTTTGATAATATGCAACCCCAAAATGATAATTGTTCTAGCGAG
CAAAAAGAACTTAAAAGAGGATGCAGTGACTGTAATTGTAAAGAGCAAGC
CAATTCACCCCCCTCGAAAACACATGATACTAGTTATATTTACGAAAACT
CCCAGAACATCTTTGACAATAAATTAAAGGGAGATTTAGATGAACATATT
GGAACTATCAAGAATTTAATTGAACATGAAATGACTTTGAtaatgacaaa
ttttgattccgatacaaaaaatcaaattataaaatgtttaaaaagtattg
aaaaataGatggaGGACATGGATTGGCTagatgaaagtgaaaatttagaa
aatgatttcaattctttgaaacataaacatacaaagGATGGATTTCGTGA
AGGAATTTCCCAGGGCCAAGATTACATTCTCCAGACTGCATTCAACGAAG
GTTTCAAATCATctggcatatttttcgaaaaactttCTCATTTCAGAGGG
AAAGTCAGtgCGATATATATGTTTCTTATGAATCAGCCTGCTTTTGTGAA
AGAAACCGGAGATCAATTTGAAGCTTTGATCACCAAGcttgaagattttg
aaaataaccAAAGTCATATTGATGAAATAGCTGCTCAGAATAACAGACGG
AAGACAGAAGAAAGAGACTTGGGAGGTCATAAGAACACAAGGCATGATTC
TATGGATAACACTACAATAGATACACTTATTGATGGCTTTGATAATATGC
AACCCCAAAATGATAATTGTTCTAGCGAGCAAAAAGAACTTAAAAGAGGA
TGCAGTGACTGTAATTGTAAAGAGCAAGCCAATTCACCCCCCTCGAAAAC
ACATGATACTAGTTATATTTACGAAAACTCCCAGAACATCTTTGACAATA
AATTAAAGGGAGATTTAGATGAACATATTGGAACTATCAAGAATTTAATT
GAACATGAAATGACTTTGAtaatgacaaattttgattccgatacaaaaaa
tcaaattataaaatgtttaaaaagtattgaaaaataG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12047MSTRG.12047Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12047.13.p2MSTRG.12047.13.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12047.13.p2.exon1MSTRG.12047.13.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12047.13.p2.exon2MSTRG.12047.13.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12047.13.p2.exon3MSTRG.12047.13.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12047.13.p2.exon4MSTRG.12047.13.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12047.13.p2.exon5MSTRG.12047.13.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089_pilongenomesc0000089_pilon:696242..699152 +