MSTRG.12047.12.p2 (mRNA) -

Overview
NameMSTRG.12047.12.p2
Unique NameMSTRG.12047.12.p2
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000089_pilon:696241..699152+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.12047.12.p2 ID=MSTRG.12047.12.p2|Name=MSTRG.12047.12.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2912bp|location=Sequence derived from alignment at sc0000089_pilon:696241..699152+ (Clytia hemisphaerica_ch_hm2_pilon)
AATTCTTAGAATCAGTTTATGCCTAGTagcaaattatttgaaaaattata
aaaaatggaGGACATGGATTGGCTagatgaaagtgaaaatttagaaaatg
atttcaattctttgaaacataaacatacaaaggtaaatacttttttaaga
atttttgattttctctcaGTCTAAGCACTTTGTtgattcaagttcatttt
ggaagaaacaatGTCTTGTAAAAATCAGTACCAATGATAAATAATCAATT
GTATGTCTAGGCCTTCATGCTGCTTCAGCTTCTTGTTTATATATGATGCA
CACTTCTTTATAAGATTAGTGTTTTTTGGCTGATGGTGGAGCATTCTATC
AAATCTATCAAAGATGTCTGATGAAGTTTGCATAGAGTTTTCATATTTCA
CAAATAAAATGTGCTTTAATAACACAACATTACagtaattcttttgaaaa
aatgttattttattatATAAGGATGGATTTCGTGAAGGAATTTCCCAGGG
CCAAGATTACATTCTCCAGACTGCATTCAACGAAGGTTTCAAATCATctg
gcatatttttcgaaaaactttCTCATTTCAGAGGGAAAGTCAGGTAAGTT
AATAACTATACAAACTATAAAGCTCTTGAAAAAGACTTGATGATGTTACT
GTTTTACTCCACTTTGTTTCTTCCCCTTCCTCTGCCATGTATctgttttt
caattatttataCTTCACATTAAATAAATGGTAGCTGTATcaaatatttg
tttattttgtttgttttagtgCGATATATATGTTTCTTATGAATCAGCCT
GCTTTTGTGAAAGAAACCGGAGATCAATTTGAAGCTTTGATCACCAAGct
tgaagattttgaaaataaccAAAGTCATATTGATGAAATAGCTGCTCAGA
ATAACAGACGGAAGACAGAAGAAAGAGACTTGGGAGGTCATAAGAACACA
AGGCATGATTCTATGGATAACACTACAATAGATACACTTATTGATGGCTT
TGATAATATGCAACCCCAAAATGATAATTGTTCTAGCGAGCAAAAAGAAC
TTAAAAGAGGATGCAGTGACTGTAATTGTAAAGAGCAAGCCAATTCACCC
CCCTCGAAAACACATGATACTAGTTATATTTACGAAAACTCCCAGAACAT
CTTTGACAATAAATTAAAGGGAGATTTAGATGAACATATTGGAACTATCA
AGAATTTAATTGAACATGAAATGACTTTGAtaatgacaaattttgattcc
gatacaaaaaatcaaattataaaatgtttaaaaagtattgaaaaataGGC
ATTGTTATTATTTCAAGACAAGACTTGCATTCCCATATAAATATAGCTAA
TATAAACAATGTTTGGTAATGTCGCTTTTATTGCCAGTGGTGGTGAACAG
TTTCTTGTCTCTAATACATAACAACACATGCcccttttcaatattttatt
atataCTTATCAGTTAATGAAGGTCGAAAACACATATaataatttgttaa
aaaaataaaccacTTCTCTTGTGTTATTTACAtaatattcgaatatttct
tttgaTCTTACTCAGAAACACGTAGTGCCGATTCTTCTCGGAGCAAACCA
CTTATTTGTGCACTGTTTGTTTTCACAGATGTTTCATTGCTTTGACATTA
AAGGTCTAGTTCTCTAACATGTGTGTTTATTTTTTGCTACAACAAGCTTT
AGAGCAAGCAGGTGCGCAAGTTGGAGCACAAGTTGGACCACATGGCATTG
GTGGAGGTGGTGGAGCTGGAAGGTTGATGACTGTTGGTGGAAGGTTGACG
TGTTGGCATGGTGGTGCAGCGCAAGGGGCTGGGGCTGGTGGAGCACATGG
TGGGGCGGCACATGGCATAggTggTggTGCGCATGGTGGGGAGGGAAAGG
TGTGGTGCGCATGGTGGGGCAGCACatggcataggtggtggtgcacatgg
aggggcagcacatggcataggtggtggtgcacatggtggagcagcgcatg
gcataggtggtggtgcgcatggtggggcggcacaaggcataggtggtggt
gcacatggtggggctgcacatggcatggccattggcattggtggaggcat
gcatggtggagctgcacatggcatgggtggAGGAGGTGGTGCGCAACAGC
TTGGTCGGCAAGCGGGGTAGCAAGCTCTTGGACATCCAGCAGGGCATGGT
GGGGGAGCTCGAGCAGGTGGTGGGAGAGCAGGTCTACAACAAGCTGGTGC
ACAAGATGGTTGACACATAGGCATTGGTGGTGGTGGAGGAGGGGGCATGC
AACATGCTGGTGCACATGAGGGTTGGCACATAGGCATAGGGGGTGGAGGT
GGTGGCATGCAACAAGCAGGAGCACAAGAGGGCTGACAAGCtggcatagg
tggtggggcacatggtggggcggcacatggcatgggtggtggggcacatg
gaggtgcagcacatggcatAGGCATAGGCATTGGTGGTGGGGCACATGGT
GGAGCAGCGCAAGGCATAGGTGGTGGTGCACATGGTGGAGCAgcacatgg
cataggtggtggggcacatggaggtgcagcacatggcatgggtggtgggg
cacatggaggTgcagcacatggcatgggtgtggggcatggaggtgcaGCA
CATGGCATAGGGGGGGGTCGAGGTGGAGCGTTACAACACCCTGGCATAGC
TTGACATTGTGATGGACAAGGCATAGGTGCAGCAGGTTGTGCAGCGATCA
TGGATGACCAATGACTACAGATTGGTGCGCAGCCAAAGGCTGGCAtaggt
ggtggtggtggtggtggaggtggtgCAGCGCAGCAGCTTGGCTGGCAGGC
TGGTGCACATGCGGCAGCACATCCCATTccacatgggtttgcacttctCT
TCTCGATCTCtt

Coding sequence (CDS) from alignment at sc0000089_pilon:696241..699152+

>MSTRG.12047.12.p2 ID=MSTRG.12047.12.p2|Name=MSTRG.12047.12.p2|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2187bp|location=Sequence derived from alignment at sc0000089_pilon:696241..699152+ (Clytia hemisphaerica_ch_hm2_pilon)
atggaGGACATGGATTGGCTagatgaaagtgaaaatttagaaaatgattt
caattctttgaaacataaacatacaaagGATGGATTTCGTGAAGGAATTT
CCCAGGGCCAAGATTACATTCTCCAGACTGCATTCAACGAAGGTTTCAAA
TCATctggcatatttttcgaaaaactttCTCATTTCAGAGGGAAAGTCAG
tgCGATATATATGTTTCTTATGAATCAGCCTGCTTTTGTGAAAGAAACCG
GAGATCAATTTGAAGCTTTGATCACCAAGcttgaagattttgaaaataac
cAAAGTCATATTGATGAAATAGCTGCTCAGAATAACAGACGGAAGACAGA
AGAAAGAGACTTGGGAGGTCATAAGAACACAAGGCATGATTCTATGGATA
ACACTACAATAGATACACTTATTGATGGCTTTGATAATATGCAACCCCAA
AATGATAATTGTTCTAGCGAGCAAAAAGAACTTAAAAGAGGATGCAGTGA
CTGTAATTGTAAAGAGCAAGCCAATTCACCCCCCTCGAAAACACATGATA
CTAGTTATATTTACGAAAACTCCCAGAACATCTTTGACAATAAATTAAAG
GGAGATTTAGATGAACATATTGGAACTATCAAGAATTTAATTGAACATGA
AATGACTTTGAtaatgacaaattttgattccgatacaaaaaatcaaatta
taaaatgtttaaaaagtattgaaaaataGatggaGGACATGGATTGGCTa
gatgaaagtgaaaatttagaaaatgatttcaattctttgaaacataaaca
tacaaagGATGGATTTCGTGAAGGAATTTCCCAGGGCCAAGATTACATTC
TCCAGACTGCATTCAACGAAGGTTTCAAATCATctggcatatttttcgaa
aaactttCTCATTTCAGAGGGAAAGTCAGtgCGATATATATGTTTCTTAT
GAATCAGCCTGCTTTTGTGAAAGAAACCGGAGATCAATTTGAAGCTTTGA
TCACCAAGcttgaagattttgaaaataaccAAAGTCATATTGATGAAATA
GCTGCTCAGAATAACAGACGGAAGACAGAAGAAAGAGACTTGGGAGGTCA
TAAGAACACAAGGCATGATTCTATGGATAACACTACAATAGATACACTTA
TTGATGGCTTTGATAATATGCAACCCCAAAATGATAATTGTTCTAGCGAG
CAAAAAGAACTTAAAAGAGGATGCAGTGACTGTAATTGTAAAGAGCAAGC
CAATTCACCCCCCTCGAAAACACATGATACTAGTTATATTTACGAAAACT
CCCAGAACATCTTTGACAATAAATTAAAGGGAGATTTAGATGAACATATT
GGAACTATCAAGAATTTAATTGAACATGAAATGACTTTGAtaatgacaaa
ttttgattccgatacaaaaaatcaaattataaaatgtttaaaaagtattg
aaaaataGatggaGGACATGGATTGGCTagatgaaagtgaaaatttagaa
aatgatttcaattctttgaaacataaacatacaaagGATGGATTTCGTGA
AGGAATTTCCCAGGGCCAAGATTACATTCTCCAGACTGCATTCAACGAAG
GTTTCAAATCATctggcatatttttcgaaaaactttCTCATTTCAGAGGG
AAAGTCAGtgCGATATATATGTTTCTTATGAATCAGCCTGCTTTTGTGAA
AGAAACCGGAGATCAATTTGAAGCTTTGATCACCAAGcttgaagattttg
aaaataaccAAAGTCATATTGATGAAATAGCTGCTCAGAATAACAGACGG
AAGACAGAAGAAAGAGACTTGGGAGGTCATAAGAACACAAGGCATGATTC
TATGGATAACACTACAATAGATACACTTATTGATGGCTTTGATAATATGC
AACCCCAAAATGATAATTGTTCTAGCGAGCAAAAAGAACTTAAAAGAGGA
TGCAGTGACTGTAATTGTAAAGAGCAAGCCAATTCACCCCCCTCGAAAAC
ACATGATACTAGTTATATTTACGAAAACTCCCAGAACATCTTTGACAATA
AATTAAAGGGAGATTTAGATGAACATATTGGAACTATCAAGAATTTAATT
GAACATGAAATGACTTTGAtaatgacaaattttgattccgatacaaaaaa
tcaaattataaaatgtttaaaaagtattgaaaaataG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.12047MSTRG.12047Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12047.12.p2MSTRG.12047.12.p2-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.12047.12.p2.exon1MSTRG.12047.12.p2.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12047.12.p2.exon2MSTRG.12047.12.p2.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12047.12.p2.exon3MSTRG.12047.12.p2.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12047.12.p2.exon4MSTRG.12047.12.p2.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.12047.12.p2.exon5MSTRG.12047.12.p2.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089_pilongenomesc0000089_pilon:696241..699152 +