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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000089_pilon:262173..268342+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.12006.3.p1 ID=MSTRG.12006.3.p1|Name=MSTRG.12006.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6170bp|location=Sequence derived from alignment at sc0000089_pilon:262173..268342+ (Clytia hemisphaerica_ch_hm2_pilon)
cagttcaCTCGAGGACGATATACGTTTCACAAAACCAAAACAGTACAGAT
ACGGCAGACTGTGGCTTTTTCAACAAACCGTGCAACAGTTTGCGTCAAGC
CATCAAAATCTCCGATCCATCAGACACCATTTTAATGGATTCTAATTATG
TTTACCACCAGAATAAAACAATATCCATCCCGCATTCTCTGATTATCTCA
AGTTATTCTGCTGGCCCTGCAATGAAGAGCGTTGATGACAAAGCTATTTT
GGATTTCCTCTTCCACTTTGAAGAAGGAGACAGAACATTTTTCTCCATCA
AACAAAAACTCATTCTCACAAACATTAAATTGATTGTTAACCCAACAAGC
GACCGTTATGTGATTGTTTTTAGTGCAGATCAGAACCAAAATGTCTCAAA
GATATCAATTGTCAATTGTGTTTTCGAGCAACTGTCTGGCACCGAGATGA
CtttttttGATCGAGTTCCATTTTTCGATGCAGAAGTCAATAAAACAAGT
TTCGTTGCAAATCCTTTGgatataaaaacaagaaaacaacgAGTGGACTT
TGAACAAAATGGTGTACTCGATCAGAACTTTGTAAGGAAAATTGCTTTTT
ACGAATGCGATTTTCTCAGTTTCTCTCTTTCAGAAGAGTCTGTAACAAAC
TCAGAATGGTATTTTTGGAATAACACTTTCAGAGAAAGTTATGTTCTACT
TGGTGGATCAATGGCCGTGGTGTACTATGCAGATAATATTTTCAATAGCT
CGTTTCTTGATCAATCATATTCAGATCCTCACCCGACTCaaccgaaattt
ttttccacGAAAGTTGTACATTGTATTTTTCGGGACAGTTCTGTTTCGTT
TCAGAATAGTAAACtgtatcaagtatcaaaaacACATTTTGAACACTCTA
AGGTTGCCATTGGTACTTATCAAGACACAATCATTAACATAGAAAGCTGT
TCATTCAAGGGATCGGCGTTCGATACACCACCTCCAAGCCAGCTGGAACT
ATATTCAATAAGGTCAAATAACGAAGGGAAGGCATCGATAAATAATTGCA
CTTTTGAAAACTCGAACTCCGGTTCCATTATCTGCAACGGGTTTAGTATC
ACCATCACAAATACAACATTTTTGAACAATTCGCTAATCGACGATCAAGA
CTTCGCGACCACCATGGCAGCTGCATTAACTATAACGTCATCCATGAGTG
TTGACCTTAGTAATTGTACCTTCTCAGAAAACAGAGCTCCCGCAATTCTC
TTCAGCTCAATATACATCGTAATGTCAAACAGCATCGATATCTTTTTACG
CTTATCTGAGGTGATGGTGGTGTCGTCTAGTGACCTCAATAGGGAAAGTA
ACATTTTACTTATCAAAGCAAATAGACAGGCCGTATTAGAAGATATAGGT
ATCTTAAACTCGAGCGTATCGTGTTTACCAAACTATAACATACATGGCAT
TATGAGGAAATATATAGGGAACAACCGATTTTTCGTACGGTTGTCATGCG
AAGAATGCGAGGGGACGAAATACAATGTCAAAAACAAATCACACGTCTCT
TGGGATACTTCTGGTGATGCTACAATTCACAATGTGACATGCTATCCTTG
CCCTTACCAAGCTTCATGCGTAAATGGTATTAAAAGTAAAGGTAATTATT
GGGGATATGCTGATCATTTAGGATATGTGGCTTTCGTGCAATGCCCTCCT
TTCTATTGCTGTCCTACTTTAAAGAAATGTGCTTCTTATAACAGCTGTTC
GAACAATCGACAAGGAAGACTTTGTGGTGAATGTAAatacaatcaatcaa
tcagccTCTTTAGTGGTTCACGCAATAGATGTGTGGAAGCGTCAACTTGC
CAAGAAGGCTGGTGGCTCTGGTTCCTATACGCACTCGTCATTATTCTCGC
ATTGTTAACCGTATTGTATTACAAAGACGTCTTTAAAGGAATGACATCCA
TAATCTGTTGTTGCTCCCCCGCACATCCGTTGGAAGAAATGACTGATTCA
GATCCTGAAGAAAACACGCTGGCTTCACCTCTCTTAATGAGCAGAGAAGT
TGAACGACGATCACAAAACCAACAAATATCTGTCACATTCTCTGGAGCTG
TCAAGATCGCTTTCTTTTTCTACCAGACAGCTTCTATCATCCGGATCAAT
GCACCTGCGAAAATGGAATATCGCATGCCTTATATCATCGAAATTTTAAC
TTCTTTCTTTAATGTGAAAATAGATATTGGATCTGCTGATTTGATCGACA
TTTGTCCACTGCAAACGAAAAATGTTACTCTAATAGAACTCATCCGATTG
AGTGTTATCTTCGGTATGATTCTCTTGGTGATTGTCGTGATGTTCGTGTT
GTACTTGTATCGACGGTACCGAAATATTCGACACCAGACCTCTTTCTTTG
CTGTTAGATTGAAAGTGACCCACATCCAGTTGTTGGTTATCGGTTATGCC
AGCATTGCCACGTTTTGCATCCAATCCGTGGACTGTATCCATATTGATGG
TGAATGGTACATTTTCAACCAAGCTCATTTGAAGTGTTTCCAAAGCTGGC
AGATTGTTATCATCCTTCTCATCGTTTTGTGGGTGATACCCTTCCCTGTG
GTGCTCTATATCGGTTGTAAATTGTTGAGAACTGGACAGATAACACCGAA
TCAGTACTTTATTAGTCTGATGTCTCCACCCTTACTGCCCGTTTTCATGA
TCAGAAGCTATTGCATTGACGATCGAGCATGGGTAGACCAACAGAAAATG
GAGCGAAATAGCATACTTGCGTTTCTTAATGAACCTTTCAGAGAGAGTGA
AACCAAGGATGGAGGATTGGAGCGAATTATTTGGGAACCTGTGTTTATTG
TGCGCCGATTGATTCTGGTTGTTACAACCACGTTCGTCCGTTCTCCGATC
TTAAAACTGTACCCTGCTGGAGTCATGTTGATTTTATTTACCTTACATGA
TTATCTTACAAAGCCGTTTGTTAAGCCAAAACTCAATTTCGTTCAATTGG
TATCTATGTTGCTTCTGGTGACTCTTACCCTTTTCAACATGTTCTGGGCT
CTCTCCATAAACGTTGATATTCTGGAGAGTTTAGAGTATCGTatatttgg
aaaacttttaCTTATTCTTGAATTGTGTATTTTGTTGAGCCCCTTCTTTC
TCCTGGTAATGGCTTTTATTGGGAAGATGGGAAAAGCGTTGTATAAAGCA
TGTCTCCGGACAAAATTGGACTGAATTTGTTTATATTCTTTTGTTATGAT
TaggaatttacttttttttttagattagaAATTTTCTATAAAACGCAATA
AAATTTGCATCCCCTGCCTACTGGGGAATTTTAATTTGTCGGTCAAGGGA
ATTTCCAAAGGCGAGTTATTTGACCCAATGAGATCCAATGCTAATGAAAA
ATCCAGCTAGGGGTTATGAATTTGCATTAGATATGAGATTTTACATTAAT
CTGATCAAAAAAGTGTCTTCTGTCACTTCTTATACCTTCTTGTATATATA
GTATATCGtatgttaaaaaattttgattcccTTTAGATGTaaaaaaaTTT
ATCTAGTATGAACTATAATCGTTGTAATTTTAGATTTCAatctcttttaa
aattttcaagatttcatgTTTAATTGTTAATTCTTCTTTGTATTGAGCTG
TTCCATTGAAAATCCATACAAGGATATGcgcgaaccttttcaagtcaaag
aaATTCTTAGAAATGTGAGGATACCctctgaaaaatggcaaaatttgaac
GTTGAATGAACGAAAACCTGTCTTTAccctcctggaaattttagaataac
tttttaccctcCCCCCGGAAAATGAAACAAACACTCCTTTAGACTCCCTG
GAATTTCTTATCACGTTAATCAAAATTTATCTGTATGGAATGTCCCAAAT
CCTTCCCAGCTACCAGAAGCGTATATGCTGTTCTTAATCACCCTTGCAAA
ACACTTTTGCCCATGTATGGTTGCATTTCCCAAGACCACAAGAAACACAG
TTATAGAAGTACAGTTAAGGCGGCTCTCTAGTTCGACGTGCTGTTATTTG
ATACGCTCAATTACTCAATcataatattgaaagccaccATCGACAAAAAA
CTCTCCTAAAAGACGCTCtgctattcgatacgctcccttgtTTGAGGAAA
TTCCAATtgcccttgaaaatcgaattaggaAGAGTCAACTGCAGCTAcag
taaattcaaattttttcacagcTACGGTTCCGGATtagtagaaaaaatat
ttgctaACATTTTGGAATGTTATGCTTCCATTCAAGCAAAGCTGTTCTTC
GTGTTTTTAGGACGGCGAATACCATATTAAAGAAATGAAGTTCCAAGTAC
CTCTACCGAAAAGGTATACaccagtctgttcctctaaagaatcctacatt
gtaacacgcatgcgtaatttgtcgttttttaaaccatacgtagttaattc
ccgtgataaacaaagaggaatgaattcaagaggtacagtcactttcggtc
ggggctGTGGACGGCGacatttgtcgttctttttgtctatttttagtaat
gcaggattctaaTATTAACCCCTCACACTTTATAATAGAAACAAATAATT
CAAACAAAGTGTTGTTGTCTTGATCTGTTGTTATTTATATTTTACTATAT
CTAGATGTTTTCACACTAAAACGAGGCTAAACCTTCGTGTACCCCTCCCT
TAGGTCTCGTAAACACCCTAGACAGGCGTATTTCACTATGGGGCGAAACT
CTTATTTCTAATTTCAGTCCccctaagggttacaaaaaaactcaaataaa
aaactcccaaaacttcttttttttccatCGATTTTAGACCCCAAAatttc
cgattttcaaaaactggGCGGCACCACCGTCATTTTGCAAAGTTAGTTCC
CCCCGGGtatacgcttttttttttataagaatagtgtaaatccatttcat
catggatattcttaacttttttgggaaaatcatgaTTAAATATTCTTGca
gcacattcttaggttaggatcctaatacttcatactagatttaacattta
gtacatacgtctcaagcataaaatggcatttttgtaaaaggaatgagcct
aacttgggggtaattgaaaatgctctaaaaatgacattcttagctcgAGT
AGCAAagttccatgatggtgatattcttagcatattcttaattttttggc
cattttcatcataaacattcttataaattcttataaaaaaagcgtgtacc
ttaGTACCTTCCACTAACAAGACTGTCACGTCACATGTTCCACATTTCAT
cattttattgttctttttcatCGTTCGCTAGATATGCGCACACTTCACAC
GTGGTTAACGATACAATGATTGTCGTTGGAGGGGTGGATACGAGTGGACA
ATTTTCAACCAATGAAATTCTACTGATTGATCTGATTGGACGCACTTTTA
GAGGACTGAAATTTCCGGTAAGACAGTTTATTTATAtccttcaaagaaat
ttttcattccaattcaaatttatttattccAGCTAAGGCTTTGCATGGCC
TTGTAGATTTTCAGGTTAGAAGGCAAATGTTTCTTCCCGAAACTCTGCTG
CTtcaatatttcaagattttgtgaCATTGCTACCAGCTAATTATCAAGTT
AGGTAACACTAACAAGGAAAGGCCCAGTTCAATTGGAAACAGAAAGCTAA
GATAGGAATGTGACGACAGTTTAgccatttattttttaaagccGCCCGTT
TCTCTTACCGCCCTTTTAACACGCCCTTTCCATACAGCCGCTGTTTTGGA
AGACTTTGATTGTTATGGATCACAACCTTTAAGCAACTAAAAAGTCTTCC
CAAAACGttctacttttctttctttatagGCATGCAATCCCGCCTCGCCA
CTCATGTTCCATAACCATCAAAGTCTCCTCTTAACACGAGGGCGTGAGGG
GTGTGAAAAAGAAGGGCGGTTGTTGGTGGTTGGCGGGGGTggaaattgtt
tttcatttggAACACATTTCAATCGTTGTGTTGTTTCTCTTGATTTGAGT
GATGAGATCAAACTGACTTGAAtttttcattacgtaatgtttggAGCTAA
ACGAATGGAAAAACGGAAGAGAAAAGGGTGTCCAGCGCAcgtaaaaacaa
acttcaaaagcTGGACACAA Coding sequence (CDS) from alignment at sc0000089_pilon:262173..268342+ >MSTRG.12006.3.p1 ID=MSTRG.12006.3.p1|Name=MSTRG.12006.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3840bp|location=Sequence derived from alignment at sc0000089_pilon:262173..268342+ (Clytia hemisphaerica_ch_hm2_pilon)
gttcaCTCGAGGACGATATACGTTTCACAAAACCAAAACAGTACAGATAC
GGCAGACTGTGGCTTTTTCAACAAACCGTGCAACAGTTTGCGTCAAGCCA
TCAAAATCTCCGATCCATCAGACACCATTTTAATGGATTCTAATTATGTT
TACCACCAGAATAAAACAATATCCATCCCGCATTCTCTGATTATCTCAAG
TTATTCTGCTGGCCCTGCAATGAAGAGCGTTGATGACAAAGCTATTTTGG
ATTTCCTCTTCCACTTTGAAGAAGGAGACAGAACATTTTTCTCCATCAAA
CAAAAACTCATTCTCACAAACATTAAATTGATTGTTAACCCAACAAGCGA
CCGTTATGTGATTGTTTTTAGTGCAGATCAGAACCAAAATGTCTCAAAGA
TATCAATTGTCAATTGTGTTTTCGAGCAACTGTCTGGCACCGAGATGACt
ttttttGATCGAGTTCCATTTTTCGATGCAGAAGTCAATAAAACAAGTTT
CGTTGCAAATCCTTTGgatataaaaacaagaaaacaacgAGTGGACTTTG
AACAAAATGGTGTACTCGATCAGAACTTTGACGGCGAATACCATATTAAA
GAAATGAAGTTCCAAGTACCTCTACCGAAAAGATATGCGCACACTTCACA
CGTGGTTAACGATACAATGATTGTCGTTGGAGGGGTGGATACGAGTGGAC
AATTTTCAACCAATGAAATTCTACTGATTGATCTGATTGGACGCACTTTT
AGAGGACTGAAATTTCCGGCATGCAATCCCGCCTCGCCACTCATGTTCCA
TAACCATCAAAGTCTCCTCTTAACACGAGGGCGTGAGGGGTGTGAAAAAG
AAGGGCGGTTGTTGGTGGTTGGCGGGGGTggaaattgtttttcatttggA
ACACATTTCAATCGTTGTGTTGTTTCTCTTGATTTGAGTGATGAGATCAA
ACTGACTTGAgttcaCTCGAGGACGATATACGTTTCACAAAACCAAAACA
GTACAGATACGGCAGACTGTGGCTTTTTCAACAAACCGTGCAACAGTTTG
CGTCAAGCCATCAAAATCTCCGATCCATCAGACACCATTTTAATGGATTC
TAATTATGTTTACCACCAGAATAAAACAATATCCATCCCGCATTCTCTGA
TTATCTCAAGTTATTCTGCTGGCCCTGCAATGAAGAGCGTTGATGACAAA
GCTATTTTGGATTTCCTCTTCCACTTTGAAGAAGGAGACAGAACATTTTT
CTCCATCAAACAAAAACTCATTCTCACAAACATTAAATTGATTGTTAACC
CAACAAGCGACCGTTATGTGATTGTTTTTAGTGCAGATCAGAACCAAAAT
GTCTCAAAGATATCAATTGTCAATTGTGTTTTCGAGCAACTGTCTGGCAC
CGAGATGACtttttttGATCGAGTTCCATTTTTCGATGCAGAAGTCAATA
AAACAAGTTTCGTTGCAAATCCTTTGgatataaaaacaagaaaacaacgA
GTGGACTTTGAACAAAATGGTGTACTCGATCAGAACTTTGACGGCGAATA
CCATATTAAAGAAATGAAGTTCCAAGTACCTCTACCGAAAAGATATGCGC
ACACTTCACACGTGGTTAACGATACAATGATTGTCGTTGGAGGGGTGGAT
ACGAGTGGACAATTTTCAACCAATGAAATTCTACTGATTGATCTGATTGG
ACGCACTTTTAGAGGACTGAAATTTCCGGCATGCAATCCCGCCTCGCCAC
TCATGTTCCATAACCATCAAAGTCTCCTCTTAACACGAGGGCGTGAGGGG
TGTGAAAAAGAAGGGCGGTTGTTGGTGGTTGGCGGGGGTggaaattgttt
ttcatttggAACACATTTCAATCGTTGTGTTGTTTCTCTTGATTTGAGTG
ATGAGATCAAACTGACTTGAgttcaCTCGAGGACGATATACGTTTCACAA
AACCAAAACAGTACAGATACGGCAGACTGTGGCTTTTTCAACAAACCGTG
CAACAGTTTGCGTCAAGCCATCAAAATCTCCGATCCATCAGACACCATTT
TAATGGATTCTAATTATGTTTACCACCAGAATAAAACAATATCCATCCCG
CATTCTCTGATTATCTCAAGTTATTCTGCTGGCCCTGCAATGAAGAGCGT
TGATGACAAAGCTATTTTGGATTTCCTCTTCCACTTTGAAGAAGGAGACA
GAACATTTTTCTCCATCAAACAAAAACTCATTCTCACAAACATTAAATTG
ATTGTTAACCCAACAAGCGACCGTTATGTGATTGTTTTTAGTGCAGATCA
GAACCAAAATGTCTCAAAGATATCAATTGTCAATTGTGTTTTCGAGCAAC
TGTCTGGCACCGAGATGACtttttttGATCGAGTTCCATTTTTCGATGCA
GAAGTCAATAAAACAAGTTTCGTTGCAAATCCTTTGgatataaaaacaag
aaaacaacgAGTGGACTTTGAACAAAATGGTGTACTCGATCAGAACTTTG
ACGGCGAATACCATATTAAAGAAATGAAGTTCCAAGTACCTCTACCGAAA
AGATATGCGCACACTTCACACGTGGTTAACGATACAATGATTGTCGTTGG
AGGGGTGGATACGAGTGGACAATTTTCAACCAATGAAATTCTACTGATTG
ATCTGATTGGACGCACTTTTAGAGGACTGAAATTTCCGGCATGCAATCCC
GCCTCGCCACTCATGTTCCATAACCATCAAAGTCTCCTCTTAACACGAGG
GCGTGAGGGGTGTGAAAAAGAAGGGCGGTTGTTGGTGGTTGGCGGGGGTg
gaaattgtttttcatttggAACACATTTCAATCGTTGTGTTGTTTCTCTT
GATTTGAGTGATGAGATCAAACTGACTTGAgttcaCTCGAGGACGATATA
CGTTTCACAAAACCAAAACAGTACAGATACGGCAGACTGTGGCTTTTTCA
ACAAACCGTGCAACAGTTTGCGTCAAGCCATCAAAATCTCCGATCCATCA
GACACCATTTTAATGGATTCTAATTATGTTTACCACCAGAATAAAACAAT
ATCCATCCCGCATTCTCTGATTATCTCAAGTTATTCTGCTGGCCCTGCAA
TGAAGAGCGTTGATGACAAAGCTATTTTGGATTTCCTCTTCCACTTTGAA
GAAGGAGACAGAACATTTTTCTCCATCAAACAAAAACTCATTCTCACAAA
CATTAAATTGATTGTTAACCCAACAAGCGACCGTTATGTGATTGTTTTTA
GTGCAGATCAGAACCAAAATGTCTCAAAGATATCAATTGTCAATTGTGTT
TTCGAGCAACTGTCTGGCACCGAGATGACtttttttGATCGAGTTCCATT
TTTCGATGCAGAAGTCAATAAAACAAGTTTCGTTGCAAATCCTTTGgata
taaaaacaagaaaacaacgAGTGGACTTTGAACAAAATGGTGTACTCGAT
CAGAACTTTGACGGCGAATACCATATTAAAGAAATGAAGTTCCAAGTACC
TCTACCGAAAAGATATGCGCACACTTCACACGTGGTTAACGATACAATGA
TTGTCGTTGGAGGGGTGGATACGAGTGGACAATTTTCAACCAATGAAATT
CTACTGATTGATCTGATTGGACGCACTTTTAGAGGACTGAAATTTCCGGC
ATGCAATCCCGCCTCGCCACTCATGTTCCATAACCATCAAAGTCTCCTCT
TAACACGAGGGCGTGAGGGGTGTGAAAAAGAAGGGCGGTTGTTGGTGGTT
GGCGGGGGTggaaattgtttttcatttggAACACATTTCAATCGTTGTGT
TGTTTCTCTTGATTTGAGTGATGAGATCAAACTGACTTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000089_pilon | genome | sc0000089_pilon:262173..268342 + |
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