MSTRG.11993.1.p1 (mRNA) -

Overview


Name	MSTRG.11993.1.p1
Unique Name	MSTRG.11993.1.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000089_pilon:7702..10433-
coding sequence from alignment at sc0000089_pilon:7702..10433-

mRNA from alignment at sc0000089_pilon:7702..10433-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.11993.1.p1 ID=MSTRG.11993.1.p1|Name=MSTRG.11993.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2732bp|location=Sequence derived from alignment at sc0000089_pilon:7702..10433- (Clytia hemisphaerica_ch_hm2_pilon)
GAAAACTTGAGATTTTTTGTGACATCAGAAGGCTGTTTGTATTTTCAAGT
CTTGTTGAAAAACAATATGAATTATTGATTTAGGTAGAAACAGAAAATGA
TGAGAATTCGGAAAACTTCGAACTTTTAGTCTTTAACAATATCATGTCAT
CAAGGAAAGCACATCAAAACATTGGATTCAAAACTGCCACAACATTGAGA
CCATCCATCCAACAGGTTTACAATGAAGAAGAACAACAACGGAAACAAGA
TATTCTCAACAGAAAACAACAACAACAAAGTACCCAGAAATTTCTTCTTC
GGGATCACCTAGTTCTTCACGAAACGGTTGATCAACAAGACTACCAACGG
TTGGCAAAGTTGATGCCTTTGGTGAAGAATAGAACTTATAACATCAATGC
GCCTGATGAAGATTGGTGTTGCAGGAGCCCCTTACATGTTGCATGTTCTA
ATGGTATGTTAACGGTTTTGGAATCAACCATGAAAATCTGTATTCGGTTT
TACTCTTTACTCTTACTAGCACACGTTTTTTATAAGAACATAAGGCTTCG
ATGGCCAAAATGTTAAGAACATTTTAAGGCTTTGCAGACTTTAAACCACC
CAATTTCTTAGGAAAGTGGACAAAAATACTCAAATGGTGAAATAAGAACA
TGTTAAAGAACATTTTTATGCCTAAAACTCAAAAAGTTAAGAACATCCGA
AGGCTTCAAAAGTTTTGGATGTTCTTATAAGAAAAACGTGTATCACTTTT
TGATAATCTTACATCAGTGAGATGGTTATCACGTGGCCTTCGAATTATTT
AGGTAGCACAGATAGGTAGATAGACGTTTATTCGAAGGTAAATTTGGTGT
CCTATGAAAAAAATAAAATCTGAAAAATTTTGCCTTTCAAATTTAAATCC
CCACCAAATTGAATTCCTAAATTCAGTATTTTTGGTATTATTCAAATCTG
TTTTTTTTCTTCCAGGTAGCATACGATGTTGTCAAATTCTTTTAGAGCAT
GGTGCCTACCATTCAACTCTGACGTCGTCAGGTATCACACCTGCTCATTT
CGCAGCAGAGAGAGGCTTTTTAGACATCCTACAACTGTTGTTTTATTACG
GAGCGAACTTACAAATGGAAGACTTTTCTAAGGAGAGACCTATTGACCTG
GCAGAGAAATACAATCAAATTGAATGTGTGGAGTTCTTAAAAAACATTCA
AAACTTCGAAGACAATGATAGTGGCAGTGATGAAGAACAACTGTAACGAG
TTTGTTGGTGTACATAAAATGTAACATGAAAGAAATATGAACTTAATTTG
AAACCATGTTGAAACTTATGAAAAATGTTGTTTGCAAACATTCGTATTGC
AGATTGCCCTCAAAACTACAATTCGTGAAGAACAGAGACTTTTTTCATAA
TAAATTATTTGACCGAATGCCTCGTTTTGAAAGGGATTTTATAAACGCCC
CAAACCTGTACCGTGAGTACACGTTTTTTTTGTATAAGAACATCCAAAAA
TTTTGAAGCTTTCGGATGTTCTTAACTTATGTTTTAAGCTTAAAAATGTT
TTTTCGACATTTTTCAACGCTGAAATGCAGAATTTCAACTGCGTGTATAC
TTTAGAATCACTTTTGTCACTCCAATAAAAATAGTATGCCAAAGTTCTTG
GTCATAAGAATATCATAATTTTTTGAGATTTTGCCTCTTTTTCCAGATTT
TGTTATGATATAGATAACAAAAGAGTTGAGAAAGAGTAGAACAGACTTTT
TGTCGAAGTTTTGATGTTGTTAAAAAGGTATTCCCAAGAGGTAGATCATG
ATCAACATTTTTATTATTTTATTTCATGTTTATAACGAGGCGGCAACGAA
GCTAGCAGTGGGCTAGCAGTGCGTTCTTGATTTTTGATGGTTTTCAGAGC
CAATTAGTCTAGCAAGCTAGACGACTAATTCATACATAGTAGAAATAAAG
CAAAAAGTAATAAAGGGAACAATTTTAGTCGTCTAGAAACCTTTGTGCAC
TAACTCCAAAAAAAAGAAAAGTGTCAATATTTGCAATTATAATTTTTTCC
CGCTCAAAATAATTCTTGAGAAAAACATGTGTGTGGATTTGTGTATTGAA
AGTTTTTCATTTGAGTTGATTTTGTTTTGAGAGTTTGTTATTTGCTTGAT
AAAATTGTTTTCTCGCTACGCAAGTTTCTGCGTAGCTAGCCGGGGTATCT
ATAAGGCTGGAACACCGGATTCTTCCAGTCGTTTATACAAACTAAATCCC
GTATTATTATTATTATTAGTATTGGTATTATTAGTATTACACGCATTATA
AACGACTCCAGTCTAAGAGCCAATCAGTGATACCGATCAGGCGTACAAAC
TTTCGCGGGCATTTTTCGCGAGGTCGAAAAATCGCGAAATTTAGGACATT
TACTTTCGCGAATTTGAGGAAAAAATGTTTTTCACGATCATAAACTTTCG
CGAATCGTTGGATAAAAATAAGAATTTTTGAATAAAAATTGCCTTTAAAA
TGAAAAATATTTCTTAATCCGATAAAGACGGTTGTTCTTTAGCCCAGGGG
CCACTTATAGATTTTTGATAGACTGAATGGCGCTGATAAGTGGCCCGACG
TAATTTGACAGGCTTCATATCTTGGCTTTGCTTGAGGTGGTAGCAAATAC
ATGCCACAGATCCAGTCCCTTTTTGGAGAAAAAACAAACAGAAAACCATG
TACAATAGACCAATTTCTTTCAAATTTTGGAG

Coding sequence (CDS) from alignment at sc0000089_pilon:7702..10433-

>MSTRG.11993.1.p1 ID=MSTRG.11993.1.p1|Name=MSTRG.11993.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1182bp|location=Sequence derived from alignment at sc0000089_pilon:7702..10433- (Clytia hemisphaerica_ch_hm2_pilon)
GTAGCATACGATGTTGTCAAATTCTTTTAGAGCATGGTGCCTACCATTCA
ACTCTGACGTCGTCAGGTATCACACCTGCTCATTTCGCAGCAGAGAGAGG
CTTTTTAGACATCCTACAACTGTTGTTTTATTACGGAGCGAACTTACAAA
TGGAAGACTTTTCTAAGGAGAGACCTATTGACCTGGCAGAGAAATACAAT
CAAATTGAATGTGTGGAGTTCTTAAAAAACATTCAAAACTTCGAAGACAA
TGATAGTGGCAGTGATGAAGAACAACTGTAAATGTCATCAAGGAAAGCAC
ATCAAAACATTGGATTCAAAACTGCCACAACATTGAGACCATCCATCCAA
CAGGTTTACAATGAAGAAGAACAACAACGGAAACAAGATATTCTCAACAG
AAAACAACAACAACAAAGTACCCAGAAATTTCTTCTTCGGGATCACCTAG
TTCTTCACGAAACGGTTGATCAACAAGACTACCAACGGTTGGCAAAGTTG
ATGCCTTTGGTGAAGAATAGAACTTATAACATCAATGCGCCTGATGAAGA
TTGGTGTTGCAGGAGCCCCTTACATGTTGCATGTTCTAATGGTAGCATAC
GATGTTGTCAAATTCTTTTAGAGCATGGTGCCTACCATTCAACTCTGACG
TCGTCAGGTATCACACCTGCTCATTTCGCAGCAGAGAGAGGCTTTTTAGA
CATCCTACAACTGTTGTTTTATTACGGAGCGAACTTACAAATGGAAGACT
TTTCTAAGGAGAGACCTATTGACCTGGCAGAGAAATACAATCAAATTGAA
TGTGTGGAGTTCTTAAAAAACATTCAAAACTTCGAAGACAATGATAGTGG
CAGTGATGAAGAACAACTGTAAATGTCATCAAGGAAAGCACATCAAAACA
TTGGATTCAAAACTGCCACAACATTGAGACCATCCATCCAACAGGTTTAC
AATGAAGAAGAACAACAACGGAAACAAGATATTCTCAACAGAAAACAACA
ACAACAAAGTACCCAGAAATTTCTTCTTCGGGATCACCTAGTTCTTCACG
AAACGGTTGATCAACAAGACTACCAACGGTTGGCAAAGTTGATGCCTTTG
GTGAAGAATAGAACTTATAACATCAATGCGCCTGATGAAGATTGGTGTTG
CAGGAGCCCCTTACATGTTGCATGTTCTAATG

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.11993	MSTRG.11993	Clytia hemisphaerica_ch_hm2_pilon	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.11993.1.p1.exon2	MSTRG.11993.1.p1.exon2	Clytia hemisphaerica_ch_hm2_pilon	exon
MSTRG.11993.1.p1.exon1	MSTRG.11993.1.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.11993.1.p1	MSTRG.11993.1.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000089_pilon	genome	sc0000089_pilon:7702..10433 -

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MSTRG.11993.1.p1 (mRNA) -