MSTRG.11992.2.p1 (mRNA) -

Overview
NameMSTRG.11992.2.p1
Unique NameMSTRG.11992.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000088_pilon:1301759..1304393-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11992.2.p1 ID=MSTRG.11992.2.p1|Name=MSTRG.11992.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2635bp|location=Sequence derived from alignment at sc0000088_pilon:1301759..1304393- (Clytia hemisphaerica_ch_hm2_pilon)
AGGCCATTGAATATAGTTTTATCTCCAGTTTTTGAACAAAAAAGACATAC
CTCGAAAAAGAAAACACGATTGAAGGCGTTTCTGTTAAATCTAATTAAAA
TGAATGCCTCATACATAAAATTAAACCTATTTCCAATCAAAATCAAAAAA
AATTAGGTCCTAATCTATTTTATAAGGAATATGATTCAGTTTTGAAAAAC
ATAAACAAAGACCATAAATCAACCAAATTTTTAACGCGCGAAATGAAAAT
CGTCGCGCAATGCATTGTGGGCGCGGAGGAAATTTCGACGAAAAGAACCA
CCGTGGCAAATGATACTGAAACTCGCCTCCAGGCTCTGAATATTCTAGTA
CCATTGATAAGCCTGAAAAAATTCTTAAAATAAAAAATGAAAAGGACAAA
ACTCCTCTGAATGAAAAATTTAAAATAAAAAAACGTAATAGGGCTGGCCA
AGCTTGCATTGGAACAAGCACAGGCAAGTCCTCCACTGAAACCATTGACT
TTAAACCTGCGAAGAAAAAAAACCAGCAAGCTCTTCAAATAAGAAAGCAA
AAGGCAAAACTGTTTCAATTTTGGATAAATTCAATTACACCTCGAGTCAA
ACTAATTGGCTAAATGATAACTTCTTGAAAGAGGTAATGACATTGTTAGA
AAGAAGTTACCCAGCCCTTAAGGGTATTCAAGATCCTATTAAGGGTGCTA
AAATTTCTAAAAATGATAAGAACAACCTGATGCCAGTCAACACTTATGAT
GAAAGTATTCAAATTCACCATGTCAGAAATAAGCATTTGGTGTTGTCGAC
TGGTCGAAATGGGAAGGTCTATGTTTATGATAGCATCTACTCAAACGCTG
ATATAAAATTACAAAAGCAGTTGTGTCAAATTTGCAAGTTTTTTGTTGAA
GATAGCTATCTCAATGTTTATTTTTCTAAAGTTTTGAAGCAACACGGAAC
TAATGACTGTGGTTATTTTTGCATAGCTTATAAACTACTTTTACGCCTTG
ATTTTTCACATGTTCTTGCTATACATTTGAAATTTAACACAATGTGAAAG
GGTGGTTGGGCGGACCAGACGCTTTTTATGTTTTTATAAGCATAACATTA
AGCATATTCCAGGCTCGGATATGGAGAAAATTAAATGTAAGTTTTCACCA
AGTTTTCGCGAGCCAATTTCTTTCAAAAATAAGGACTTATTTTCACGAGC
ACAGAAAATATTTACGCGAGGATAAAATTTCGCGAATCAGCCCCTTTTTG
AACTAATTTCTTTTATTTTCTTTCCTAAGGGTTTCAACAAAAGATATGAT
TAGTTTTTCGCGAATTTTGAGGAAAACTCTAATCTTCACGCAAATTAATC
CTCTTAAGATACAACCAGAGCATGCCTTATTGGTATATATTTTCGCGTGT
TACAAATTTTCAAGGGTACTTAATTTCGCGAGTTTTTTGGTAAATTTTCG
GGAAATTTAATACTGTTTAAATTTTTCAAAATTACAAAATCGCGAAATTA
AATACACGCGAATAATTATTTCTTAGTATTTTTACATCAAAAACGTTGTG
TTTCAAGCAAAATCAATCTTTTTCTTTATATTCCCACTTTCTGAAAATAC
CTAATTTAGTGAATCGCGAAATTTAATACACGCGAAACACGTTTTTTCGA
AAAGATTTCGCGATTCGCAAAAATTTGTAACACGCGAAACTATATACGAA
TAAGGTAGCAAATGGAAGCAAATTTTCAGTAGGGGGGTCTATGTTCTATG
TTCCCAGCACCTTCGCAGCCTCGAGTGTAACGCTGTTGGTTTCTGTGTGC
CTTTTTCCTTCTTGGCTTTTTTTTAATTTCAGGTTGTTGTTACCCTTCAA
GTAACCTCAAATGGATCGAAAATTCAAGACTTCACCTAACCTATTTCTAT
GTAAGGGATGGTTTGTAATTTTTTAGATTGAATTCTTCCTGTTTTGTCTT
AAAGTCCGTCCATTTTCATTTGGAATAATTGTTGACGATTTTTATCAGAT
ACGTTCAGATACGTTAAGGTCATGAAACAGAACGCATTTTTATATAATCA
CAAATACTCTCATGAAGACGAAAGTGAAAAATTATTGTGTGCGCTTTGAC
AGTTGACAGCGCATAAATAAAGCTCGTAAAAAGTTATTATCCAAATGAAA
ATGGCTGGAATCTTGTCAAACCTTCAGTACTCTTAGCGTATCACTTAGTT
TTCATTACCAGTAAGGATACAGTAAGAAAGATTGAAAGTTAAGTTTTATG
TATTTGATATTGGTTTTACTATTTAATCTGATTTTCCAGGTAGAAAGATC
AGATGTCACAGAAGATTGGATGTTTTATAAAGTCTATTGTAGTCTATTGG
AGAGCCTTATTGTTGTAGCGAATGAGATATTACAGTTGTCAATTCCTTTT
CCTGAGGCCCGGAAAACCCGAGTTACGACGAATGACGTCATAATTTGAGA
CTTGTGACGTCACATTCGTCGTAACTTGGGTTTTTGTAACTCGGGTTTTC
CGGGCCTCCCTTTTCCTGCTGTTCACTTTACAGTTGATGCTCTCTAATTC
GACGTTCTACTATTCGATACGTTCCCTTTTTCGATAAAATTAAAAGTCAC
TTTCAAACGATGCTATGTATCCAATTGCTATAGGG

Coding sequence (CDS) from alignment at sc0000088_pilon:1301759..1304393-

>MSTRG.11992.2.p1 ID=MSTRG.11992.2.p1|Name=MSTRG.11992.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=411bp|location=Sequence derived from alignment at sc0000088_pilon:1301759..1304393- (Clytia hemisphaerica_ch_hm2_pilon)
ATGACATTGTTAGAAAGAAGTTACCCAGCCCTTAAGGGTATTCAAGATCC
TATTAAGGGTGCTAAAATTTCTAAAAATGATAAGAACAACCTGATGCCAG
TCAACACTTATGATGAAAGTATTCAAATTCACCATGTCAGAAATAAGCAT
TTGGTGTTGTCGACTGGTCGAAATGGGAAGGTCTATGTTTATGATAGCAT
CTACTCAAACGCTGATATAAAATTACAAAAGCAGTTGTGTCAAATTTGCA
AGTTTTTTGTTGAAGATAGCTATCTCAATGTTTATTTTTCTAAAGTTTTG
AAGCAACACGGAACTAATGACTGTGGTTATTTTTGCATAGCTTATAAACT
ACTTTTACGCCTTGATTTTTCACATGTTCTTGCTATACATTTGAAATTTA
ACACAATGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11992MSTRG.11992Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11992.2.p1MSTRG.11992.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11992.2.p1.exon2MSTRG.11992.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11992.2.p1.exon1MSTRG.11992.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088_pilongenomesc0000088_pilon:1301759..1304393 -