MSTRG.11962.2.p1 (mRNA) -

Overview
NameMSTRG.11962.2.p1
Unique NameMSTRG.11962.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000088_pilon:794922..797868-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11962.2.p1 ID=MSTRG.11962.2.p1|Name=MSTRG.11962.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2947bp|location=Sequence derived from alignment at sc0000088_pilon:794922..797868- (Clytia hemisphaerica_ch_hm2_pilon)
AAGAGGTTGAGATTCCTGAGACTGATTTTGTTAGTAACATTTTGTTGTAT
TTTCTCACAGAAAAACAAAAGAAAAAAATATTCCAATAGTTAATCAAAAT
GCCACCACAGACAACAGCAAATACAAAAGGTGGGTATGAAGTGGATTTTG
TCAAAGATTATGATGAGATGGATGACGTCACTTGTTCCATTTGTCTTTTC
GTTCTACGTGAACCGATGCAGTCTGAAAGTTGCGGACATCGATTTTGCAA
AAGTTGTGTTAAAGCTCTAAAGAAAAAGTAAGTGCATTAAATTTAAAGAT
GTCCTAAAAGACTTAAAAGCTTAAATTGGGGAGTTAATTTTTTCAAACAT
TTTTTGACAGCAATAATGATGAGTATACATGCCCCAAAGACCGACGCTCG
ATGAAGGTAAAAGCATGTTTTTTAGGCCTTAAAAGTACCTTTCCCCAGGC
CCTTATTTGCTTCTGAAAACTCCTTCATGTGGTAGAAATGGGATAAATTC
AGGCACTAAAGAAAGAGAAGGAATTTTATTTTTAAGACTTTTTTAAAGAT
TTTTAATAAGAAATTATGTTTTTAAAGAACCATACTTATTAGCTGGGTCT
GGGCAAACTAGACAGATTAATAGATTATTTAGCTAGCATCTTATTAGAGC
ATCAAGATTAGTTAATTTTTTCCGAAAGTTTTAAGAAATAGTGGTTTTTT
TTTCTTAACTTCAGTTGTTCAATGATAAAGGGAAAGAACGAGAGATACTC
AGTCGTATGGTCAAGTGTAGGAACCACAAAGATGGATGTGAGATACATCA
GGAATTGCGTAATCTACAGGTTTTGTATCGAAGCACTTATCTTATTTAAT
ATAACATCCGTCGTCCACATGACTAAAGGTTAAATCTCAAAATAAGTGTC
TTGGAAAATTGGAAATCTTGCAATTCTGTCATCTCTTTGAGATTGGCCTT
TTTTTCATATGAAAGCATCTACTCTCTACATGGAAAAAGGGCAATCTCAG
ACCACCACAGGAAAACTTTAAATTTTGTAAGGTACTAATTTTGAGATTTA
ACCTTTAGTCATGTGAACAACGACATAGAAACATTTTATTTGCGATGGGA
GATTTTCTTGTGTACCCTTTTGTTTTTGTCGAGCAACTATCATTCAAGTC
TTTGTATCCGTTCATTCACTGACGCTGATATATTTTTCTTAGAACCATCT
AAGTACATGCGAATTTCAAGAAGTGCCATGCCGAGTAGAAGAATGCAAAG
AGAAATTTCAAAGACGCTTTTTGGTTGAGCACAACACAGAAGCTTGTCAA
TACAGACTTAAAAGTTGCCCGTTTTGTTTCGAAGATTATGCTTTTTATAC
TGAAAAGGTTCTATACGCTTTTTCTAACTGGAGTCCAAAAATGTCAACCG
CTAAGAGATTTTGTACCCCTTAAATTTATGCACCAGATTTCCCTGGGTCT
TCCTTGATCCCAAAACCTCACTGCCGATGTGTATTGAGTTTTGAAATTAT
CTTAGTTACTGTGTGCTTTAGTTCGTACCTTATTAGTTTATCAGGAGAAG
TTTTATCTCGTGAATACCTTCTGCTGTAGATACTGTACTATGGGTTTTCG
AACGTTAAAGCAGTTACCAAATAATCTTTTTGCTGTTTGTTTTCGTTATT
TTAGGAACATCTGTGCAGTTGCGATATATTTCCACTGTGTTGTGATTTTT
GCACTAAAACAAACATTCCAAGAAATCAGGTATGCTCTTTAACCCTATCT
TAATGGTGGCATTCTCAAAAATTCCAATCCCGTGCCCTTTTATCAGAGGT
GCTCGATATTGAGATATTGTAATAATGAAACGAATCATGTTATTTATTTA
TTTTCATTTCTCTTAGATGAAGTTTCATATCTCAGATGAATGTGTCAAAG
TACCGAAGCCATGCGAATTTGTCCTTTTAGGCTGTCAAAAGCAGGTTTTG
AAACAACGATTTTTATGCATGCTTTGTTCGTCTTTTGTCCAAGCCTGTTT
GCCCAATTATTTTGTTGAGTGGTTTTAAAACTTTTAACAAGCTAGTGAGA
TAAAATGATAAATCTTTGTAATATATACGCGATTTCCAGGCTGGAATCGT
CTCTAAAAAGAAAGGTGACGCAAAACTAAATTTTGGTACTTTAACTTCTA
ACAGTATAGAAACACCCCATCATTTGTTTGATTTAGACGACTATTGACAA
TTCGCTCAAGCACAACAACGATGCCACTCAATACCATTTGTCGCTCGCTC
TAAACAAAATTACTGAACAACAGAATGAAATTATTGCTCTTAAGTCAAAT
CAAGAAAAAATGGCGGTAAATCCCTGCTATTCACTTTTCAAAGATGAGCA
CATTATCCAAATCGATGATTTTCAACGAAAATTCCGCGAAGCTGTATCAG
GCGTGCCAATCAAACGCTACTTTTTTACATCTCGTTTACAGAAAATGACA
ATGTTTATATTTCTAAAAGGACACAACCAAAAATCAGCTGATCATTTATC
TATTTTTTTCAACTGTGCATATGGAAGCTACGATGATCTTGTGGATTGGC
CAATGAATGCCACACTTTATTGGTGTATCTTATACGAAGACGAGCTTCGT
AAATGCAAACGAACTGTAACAAAAGATGGGTACGAAAAGACGGGTGCTTT
TCGGAAGCCAGAAATGAATAAGAAACAAGGGGACTGGGGGATCCCTAAAT
ACGTTTCATGGACTGAAGTTTCAAATCTGGTTGAAAATAATGTCTTACGT
TTACAGGTCAACATTGAACACCATTAAAGATAAGAACCAATCAGAACTAA
GTTCGTATTAATTTCATTCGTTATTTTCTCTTGTAAATTTGCTTCTTTTT
TTTTGACATAATATGACCATGTTTGTAGATCGTTGATAAGTTTTCAAAAC
TTCAAAACTTACCCAGTAGAATACCCACATGGAAAATTCCCTATGCC

Coding sequence (CDS) from alignment at sc0000088_pilon:794922..797868-

>MSTRG.11962.2.p1 ID=MSTRG.11962.2.p1|Name=MSTRG.11962.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4977bp|location=Sequence derived from alignment at sc0000088_pilon:794922..797868- (Clytia hemisphaerica_ch_hm2_pilon)
ACGACTATTGACAATTCGCTCAAGCACAACAACGATGCCACTCAATACCA
TTTGTCGCTCGCTCTAAATGAAGTTTCATATCTCAGATGAATGTGTCAAA
GTACCGAAGCCATGCGAATTTGTCCTTTTAGGCTGTCAAAAGAACATCTG
TGCAGTTGCGATATATTTCCACTGTGTTGTGATTTTTGCACTAAAACAAA
CATTCCAAGAAATCAGAACCATCTAAGTACATGCGAATTTCAAGAAGTGC
CATGCCGAGTAGAAGAATGCAAAGAGAAATTTCAAAGACGCTTTTTGGTT
GAGCACAACACAGAAGCTTGTCAATACAGACTTAAAAGTTGCCCGTTTTG
TTTCGAAGATTATGCTTTTTATACTGAAAAGTTGTTCAATGATAAAGGGA
AAGAACGAGAGATACTCAGTCGTATGGTCAAGTGTAGGAACCACAAAGAT
GGATGTGAGATACATCAGGAATTGCGTAATCTACAGCAATAATGATGAGT
ATACATGCCCCAAAGACCGACGCTCGATGAAGATGCCACCACAGACAACA
GCAAATACAAAAGGTGGGTATGAAGTGGATTTTGTCAAAGATTATGATGA
GATGGATGACGTCACTTGTTCCATTTGTCTTTTCGTTCTACGTGAACCGA
TGCAGTCTGAAAGTTGCGGACATCGATTTTGCAAAAGTTGTGTTAAAGCT
CTAAAGAAAAAACGACTATTGACAATTCGCTCAAGCACAACAACGATGCC
ACTCAATACCATTTGTCGCTCGCTCTAAATGAAGTTTCATATCTCAGATG
AATGTGTCAAAGTACCGAAGCCATGCGAATTTGTCCTTTTAGGCTGTCAA
AAGAACATCTGTGCAGTTGCGATATATTTCCACTGTGTTGTGATTTTTGC
ACTAAAACAAACATTCCAAGAAATCAGAACCATCTAAGTACATGCGAATT
TCAAGAAGTGCCATGCCGAGTAGAAGAATGCAAAGAGAAATTTCAAAGAC
GCTTTTTGGTTGAGCACAACACAGAAGCTTGTCAATACAGACTTAAAAGT
TGCCCGTTTTGTTTCGAAGATTATGCTTTTTATACTGAAAAGTTGTTCAA
TGATAAAGGGAAAGAACGAGAGATACTCAGTCGTATGGTCAAGTGTAGGA
ACCACAAAGATGGATGTGAGATACATCAGGAATTGCGTAATCTACAGCAA
TAATGATGAGTATACATGCCCCAAAGACCGACGCTCGATGAAGATGCCAC
CACAGACAACAGCAAATACAAAAGGTGGGTATGAAGTGGATTTTGTCAAA
GATTATGATGAGATGGATGACGTCACTTGTTCCATTTGTCTTTTCGTTCT
ACGTGAACCGATGCAGTCTGAAAGTTGCGGACATCGATTTTGCAAAAGTT
GTGTTAAAGCTCTAAAGAAAAAACGACTATTGACAATTCGCTCAAGCACA
ACAACGATGCCACTCAATACCATTTGTCGCTCGCTCTAAATGAAGTTTCA
TATCTCAGATGAATGTGTCAAAGTACCGAAGCCATGCGAATTTGTCCTTT
TAGGCTGTCAAAAGAACATCTGTGCAGTTGCGATATATTTCCACTGTGTT
GTGATTTTTGCACTAAAACAAACATTCCAAGAAATCAGAACCATCTAAGT
ACATGCGAATTTCAAGAAGTGCCATGCCGAGTAGAAGAATGCAAAGAGAA
ATTTCAAAGACGCTTTTTGGTTGAGCACAACACAGAAGCTTGTCAATACA
GACTTAAAAGTTGCCCGTTTTGTTTCGAAGATTATGCTTTTTATACTGAA
AAGTTGTTCAATGATAAAGGGAAAGAACGAGAGATACTCAGTCGTATGGT
CAAGTGTAGGAACCACAAAGATGGATGTGAGATACATCAGGAATTGCGTA
ATCTACAGCAATAATGATGAGTATACATGCCCCAAAGACCGACGCTCGAT
GAAGATGCCACCACAGACAACAGCAAATACAAAAGGTGGGTATGAAGTGG
ATTTTGTCAAAGATTATGATGAGATGGATGACGTCACTTGTTCCATTTGT
CTTTTCGTTCTACGTGAACCGATGCAGTCTGAAAGTTGCGGACATCGATT
TTGCAAAAGTTGTGTTAAAGCTCTAAAGAAAAAACGACTATTGACAATTC
GCTCAAGCACAACAACGATGCCACTCAATACCATTTGTCGCTCGCTCTAA
ATGAAGTTTCATATCTCAGATGAATGTGTCAAAGTACCGAAGCCATGCGA
ATTTGTCCTTTTAGGCTGTCAAAAGAACATCTGTGCAGTTGCGATATATT
TCCACTGTGTTGTGATTTTTGCACTAAAACAAACATTCCAAGAAATCAGA
ACCATCTAAGTACATGCGAATTTCAAGAAGTGCCATGCCGAGTAGAAGAA
TGCAAAGAGAAATTTCAAAGACGCTTTTTGGTTGAGCACAACACAGAAGC
TTGTCAATACAGACTTAAAAGTTGCCCGTTTTGTTTCGAAGATTATGCTT
TTTATACTGAAAAGTTGTTCAATGATAAAGGGAAAGAACGAGAGATACTC
AGTCGTATGGTCAAGTGTAGGAACCACAAAGATGGATGTGAGATACATCA
GGAATTGCGTAATCTACAGCAATAATGATGAGTATACATGCCCCAAAGAC
CGACGCTCGATGAAGATGCCACCACAGACAACAGCAAATACAAAAGGTGG
GTATGAAGTGGATTTTGTCAAAGATTATGATGAGATGGATGACGTCACTT
GTTCCATTTGTCTTTTCGTTCTACGTGAACCGATGCAGTCTGAAAGTTGC
GGACATCGATTTTGCAAAAGTTGTGTTAAAGCTCTAAAGAAAAAACGACT
ATTGACAATTCGCTCAAGCACAACAACGATGCCACTCAATACCATTTGTC
GCTCGCTCTAAATGAAGTTTCATATCTCAGATGAATGTGTCAAAGTACCG
AAGCCATGCGAATTTGTCCTTTTAGGCTGTCAAAAGAACATCTGTGCAGT
TGCGATATATTTCCACTGTGTTGTGATTTTTGCACTAAAACAAACATTCC
AAGAAATCAGAACCATCTAAGTACATGCGAATTTCAAGAAGTGCCATGCC
GAGTAGAAGAATGCAAAGAGAAATTTCAAAGACGCTTTTTGGTTGAGCAC
AACACAGAAGCTTGTCAATACAGACTTAAAAGTTGCCCGTTTTGTTTCGA
AGATTATGCTTTTTATACTGAAAAGTTGTTCAATGATAAAGGGAAAGAAC
GAGAGATACTCAGTCGTATGGTCAAGTGTAGGAACCACAAAGATGGATGT
GAGATACATCAGGAATTGCGTAATCTACAGCAATAATGATGAGTATACAT
GCCCCAAAGACCGACGCTCGATGAAGATGCCACCACAGACAACAGCAAAT
ACAAAAGGTGGGTATGAAGTGGATTTTGTCAAAGATTATGATGAGATGGA
TGACGTCACTTGTTCCATTTGTCTTTTCGTTCTACGTGAACCGATGCAGT
CTGAAAGTTGCGGACATCGATTTTGCAAAAGTTGTGTTAAAGCTCTAAAG
AAAAAACGACTATTGACAATTCGCTCAAGCACAACAACGATGCCACTCAA
TACCATTTGTCGCTCGCTCTAAATGAAGTTTCATATCTCAGATGAATGTG
TCAAAGTACCGAAGCCATGCGAATTTGTCCTTTTAGGCTGTCAAAAGAAC
ATCTGTGCAGTTGCGATATATTTCCACTGTGTTGTGATTTTTGCACTAAA
ACAAACATTCCAAGAAATCAGAACCATCTAAGTACATGCGAATTTCAAGA
AGTGCCATGCCGAGTAGAAGAATGCAAAGAGAAATTTCAAAGACGCTTTT
TGGTTGAGCACAACACAGAAGCTTGTCAATACAGACTTAAAAGTTGCCCG
TTTTGTTTCGAAGATTATGCTTTTTATACTGAAAAGTTGTTCAATGATAA
AGGGAAAGAACGAGAGATACTCAGTCGTATGGTCAAGTGTAGGAACCACA
AAGATGGATGTGAGATACATCAGGAATTGCGTAATCTACAGCAATAATGA
TGAGTATACATGCCCCAAAGACCGACGCTCGATGAAGATGCCACCACAGA
CAACAGCAAATACAAAAGGTGGGTATGAAGTGGATTTTGTCAAAGATTAT
GATGAGATGGATGACGTCACTTGTTCCATTTGTCTTTTCGTTCTACGTGA
ACCGATGCAGTCTGAAAGTTGCGGACATCGATTTTGCAAAAGTTGTGTTA
AAGCTCTAAAGAAAAAACGACTATTGACAATTCGCTCAAGCACAACAACG
ATGCCACTCAATACCATTTGTCGCTCGCTCTAAATGAAGTTTCATATCTC
AGATGAATGTGTCAAAGTACCGAAGCCATGCGAATTTGTCCTTTTAGGCT
GTCAAAAGAACATCTGTGCAGTTGCGATATATTTCCACTGTGTTGTGATT
TTTGCACTAAAACAAACATTCCAAGAAATCAGAACCATCTAAGTACATGC
GAATTTCAAGAAGTGCCATGCCGAGTAGAAGAATGCAAAGAGAAATTTCA
AAGACGCTTTTTGGTTGAGCACAACACAGAAGCTTGTCAATACAGACTTA
AAAGTTGCCCGTTTTGTTTCGAAGATTATGCTTTTTATACTGAAAAGTTG
TTCAATGATAAAGGGAAAGAACGAGAGATACTCAGTCGTATGGTCAAGTG
TAGGAACCACAAAGATGGATGTGAGATACATCAGGAATTGCGTAATCTAC
AGCAATAATGATGAGTATACATGCCCCAAAGACCGACGCTCGATGAAGAT
GCCACCACAGACAACAGCAAATACAAAAGGTGGGTATGAAGTGGATTTTG
TCAAAGATTATGATGAGATGGATGACGTCACTTGTTCCATTTGTCTTTTC
GTTCTACGTGAACCGATGCAGTCTGAAAGTTGCGGACATCGATTTTGCAA
AAGTTGTGTTAAAGCTCTAAAGAAAAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11962MSTRG.11962Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11962.2.p1MSTRG.11962.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11962.2.p1.exon7MSTRG.11962.2.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11962.2.p1.exon6MSTRG.11962.2.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11962.2.p1.exon5MSTRG.11962.2.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11962.2.p1.exon4MSTRG.11962.2.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11962.2.p1.exon3MSTRG.11962.2.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11962.2.p1.exon2MSTRG.11962.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11962.2.p1.exon1MSTRG.11962.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088_pilongenomesc0000088_pilon:794922..797868 -