MSTRG.1196.3.p1 (mRNA) -

Overview
NameMSTRG.1196.3.p1
Unique NameMSTRG.1196.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000006_pilon:30242..34388+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1196.3.p1 ID=MSTRG.1196.3.p1|Name=MSTRG.1196.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4147bp|location=Sequence derived from alignment at sc0000006_pilon:30242..34388+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGACTACATATGATTTTGAAACGTGTAACGAATTTATCTTTAGGATGTT
GTAGCAAATTTTACCTCTCTCAAACAGGCGACTACCTTTGCTGACCGACG
GGGGTGTGCTGCTAAGGTTTGAAAAATCGACTCTACATGGGACtcgtttt
ttgaatattttgccaaaaattggggaaagaaaaacctaaataagaaagaa
attccaaaattatctcaaaattttccacttttttcccAATcccccaaaaa
ggtaccctacgaaGGATTAATTTTCTATTTAGGTATTGTTGTGACTCTAC
AGACTCCTGGacgtgaaaaaaggtaccctgaccagcggcacatcctcgta
cccctttttgcccaagtGCCCACCACCCGATCCTTTAAACCATAGCAGAC
AGTGGAGATATTTTCAACGTTGTTTCTGCATGTCATAATTCTACATCCTT
TATATtggactcttccagaaaaaatctgtTCATGGGTGAAAGAAAGTCCT
AACTGTCCAAGGGATAAATCtgcgatgtccaggggtaaactttggtgtcc
agggggttaaattgATGAGTGTCCATGGggtggaaaatgaaaatgtccag
gggtaattcattgaaaaaataatatatcctccacccccaatgaacggatt
ttttctggaagagcccattgcacGATTGCACAGATAATAcagttttaaaa
atcatataCAGCATGAACAAGCAAGTTCTGTCATTGCTACGTCTATTTAC
TTTATCTGTTCCAAATTTTAAAGCATATAAGATAATTGTTGCTTAACTTT
AGTAAACAGAATCCATATCTCTCAATATTCACAACAGCTAAGTTGCAATA
TATGTTTGTCCAACGACAAGTTGAACTTTAGAATAAATTgcttcatgttt
tttttatagatCGCTTCTCAGCTGCTTCCGAAAAATCGACAGAAACCGAA
AGTGGACAAATCGTATACCGTAAAATATCGAACAACAAAAAccctgaatc
tgaaaaattaTCGATAACAGCCACGACAACTTCTTATATCACCGACGACT
CCCAGACTGGTGAATTggagaaagatttttcaatagATGATGATTCTTTG
AAGCCAGGATCAGATACTGACTCAGCATTTTCTGTTGAGCAAATCCCTAC
CGAAGAGCTTTTATACATTCTTGGTCCATATCGTCTGTACAGTACTATTA
ACGAGGAAGAGAGCATCGATCAACTCAATAATATCGATTACAACGAGAAT
GTAATTATATCGGATATCAAATTATCGAGACGCCAACAACATAGCCGAGA
AAATAGTTTCGAGTATTTTCCACCTAAAACCACATGTTACGCTGTGGGTG
gtaaaaacaaaccaaaaaagaaaacagacttaaatttccaactgaaattt
gataaacctaacaaacaaaaaacaaaatccgAAAGTTCCGATCTTAGCCC
GATTGATGTTTCCGAAAATTACGCTGGAACTTCGAATGAAGTGAAAAAAG
AACCAAAGAAGAAATCCAGTGGAATCAAGAAAACACCCTCGTTTAAGGAC
CGCATTATTTCACCTTTGatgaaaaaaagattcaatAAAAGATCAGCAAG
CGAATCGAAATTatcgaaaatttccaaatcgATTGAATCGGAAGAATCGA
TACAACGAAGTGCAACTGTAGGGAACACAAGCAATATTGCTAGATCACCA
ATCGATAATAACACGAATTTCAAACgatttgacgattttcgaaaacatat
CAATCGACAAACTGTTAAAAATCGACATCCTAGTAGTCAATCATCGACAA
AATCTTCGAACAAATCAACCGAAAGTTTTGACGAAAGTTTACCAGAGAAC
CTGACATTAAATAGACTTGTGGATGAAAACAACGATACAGTTTTCGAAGA
TCAATCCAACTTAACGCATAGCGATTGCAGTTTTTCGGAAAGCGATATCA
ACGATATGAAAGGACACCGACAACAACGTCAGAAATATTACCGTAAAAAG
GCAAATTCACCGCATCCCAATACTCCTTTGCGGACGGCGTCTCCAGGCTC
TTCAGTCGATTCCCAGTACGGTGGAAGTACATCAAGTTTATCAACGGTCA
GTTATCAATCAATTAGCACCACGGATGTGTCCTGCTTACCTGATAAATTG
CTCATCCGTATCTTCACATATCTCGATACAAGTGACGTATgccgtttatc
aagagtttgTCGCAGGTGGAGCGAATtatatttatcagaaaaactATGGG
AACATATCAAAGTTACGAACATGACTAGTCTGGATATTGATTCGACATTG
AATGTAATGTTACAGAGGCTTGCGTATACGACTTCTTGCTTAAATATTCG
TCAAATGAAACTAGATGGATGTAAGGAGCTCACAGATGAAGGAATTCAAA
CTATGGCTTTAAGATGTCCCGAACTTCGCGCTCTTGAAATTGCATCATGT
GATCAAGTCACGGCCCGTGGGGTGTATAATGTACTTGTAAACTGCCCTAA
CTTAGCATTCCTAAACTTATCAGGCTGTGAAGGCGTTTCGAGTTTCTCAA
ACCGTTCTGATATCATAAGTTCACCGTTCAGTTTTGGCGAGTTGAAATAT
TTGGATTTGAGCTCATGCTCTTGTTTCACTGATAGCGATATTGAAATTTT
ACTCGGACGAGCTCCTTCACTCGAATATCTTTATTTACGACTATGCGATT
CCATTTCTAACATTGGTATTGAAACAATAGCTAGACGGTGTCCTAATTTA
AAGGAGATTAGTCTTAACGATTGTGTTAATATCACTGACCATGGCGTGTT
GAAGTTACTAGATTCCTGTCATAATTTACGATATGTCAGTCTCGCAAAAT
GTCCCATTACAAATATGGTTTTGGAACAAATTGCATCATCGCCAAATAAT
TTATTGAGACATTTAAACCTTTACGATTGTGAATATATTACTGATATTGC
TATCATGAAATTGTCTGCATCATGTCCTAGACTACGCTCTCTTGATATTG
GAAAATGTAGAAAATTAACGGACGCTTCGTTGTACGGACTGTCTCGTTGT
ACATTGTTACGGAGATTGAACTTAAAAGGTTGTTGCAAAGTTACAGATGC
TGGGTTGAGGAAATTAGCCACTATTTGTAAGAATCTGCGACATCTTGATG
TTAGAGACTGTTTATTCTCACCAGAGACTTACGAATATGTTCGACTTCGT
TGCCCGTTGTGTGATATACAACGCTCGTATATACATGAATGCTAAAATTG
ATATAATAATTACTGCAtattatacacccccttctcacagacacggtaag
attttttcagccagtggaggGTAAAAATAAGGGACCATAACTCAATAGGG
ACTGTTatttccatgttttttatggcttgggatttaaattccattgtttt
tgagcgggaaaattcagttgggatggaaaaatagaacaaatattttgcag
tggggatggaaaaatataacaatattCTGCATTGGGGATTGGCTTATCTG
AATATTTTCagcagggacaaaaattagagtataattttccaatggggacg
atatttttgccaatttttccagtgggaaggattccaagtgggtctgtgag
aagggtgtgttattatatatttcaaagattataatatatatattctacca
tgaacatataaacgactggacatccatatcctttgtctttttgtagaaag
ggctgctagcttcgttgccgcctcgttaaaagcataaaatgaaacaatag
attttgataatataccacttgggagtacgttgctaacaacgtcaaaactt
cgacaaaagtctctgttgttctactcttctcaactcttttatctatatca
taacaaagataacagaggcaaaatcatcgtcagcttgtcaaaactccgac
tattatttctaaattttgacttaaaagtgtctaataattttagtgagtgt
cgcattctaatttcgatattcttatgacacaggctctaaaCTTTGGCAAA
CTAtctttttcaagtcataaaaaaattattggagtgattcaaaagtatac
acgcagttgaaattctgcattttagagttgaaaatgttgatataatatat
tacaaacttgtgaaaaaattcgaaaataatttttttgtacattagta

Coding sequence (CDS) from alignment at sc0000006_pilon:30242..34388+

>MSTRG.1196.3.p1 ID=MSTRG.1196.3.p1|Name=MSTRG.1196.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1677bp|location=Sequence derived from alignment at sc0000006_pilon:30242..34388+ (Clytia hemisphaerica_ch_hm2_pilon)
atgaaaaaaagattcaatAAAAGATCAGCAAGCGAATCGAAATTatcgaa
aatttccaaatcgATTGAATCGGAAGAATCGATACAACGAAGTGCAACTG
TAGGGAACACAAGCAATATTGCTAGATCACCAATCGATAATAACACGAAT
TTCAAACgatttgacgattttcgaaaacatatCAATCGACAAACTGTTAA
AAATCGACATCCTAGTAGTCAATCATCGACAAAATCTTCGAACAAATCAA
CCGAAAGTTTTGACGAAAGTTTACCAGAGAACCTGACATTAAATAGACTT
GTGGATGAAAACAACGATACAGTTTTCGAAGATCAATCCAACTTAACGCA
TAGCGATTGCAGTTTTTCGGAAAGCGATATCAACGATATGAAAGGACACC
GACAACAACGTCAGAAATATTACCGTAAAAAGGCAAATTCACCGCATCCC
AATACTCCTTTGCGGACGGCGTCTCCAGGCTCTTCAGTCGATTCCCAGTA
CGGTGGAAGTACATCAAGTTTATCAACGGTCAGTTATCAATCAATTAGCA
CCACGGATGTGTCCTGCTTACCTGATAAATTGCTCATCCGTATCTTCACA
TATCTCGATACAAGTGACGTATgccgtttatcaagagtttgTCGCAGGTG
GAGCGAATtatatttatcagaaaaactATGGGAACATATCAAAGTTACGA
ACATGACTAGTCTGGATATTGATTCGACATTGAATGTAATGTTACAGAGG
CTTGCGTATACGACTTCTTGCTTAAATATTCGTCAAATGAAACTAGATGG
ATGTAAGGAGCTCACAGATGAAGGAATTCAAACTATGGCTTTAAGATGTC
CCGAACTTCGCGCTCTTGAAATTGCATCATGTGATCAAGTCACGGCCCGT
GGGGTGTATAATGTACTTGTAAACTGCCCTAACTTAGCATTCCTAAACTT
ATCAGGCTGTGAAGGCGTTTCGAGTTTCTCAAACCGTTCTGATATCATAA
GTTCACCGTTCAGTTTTGGCGAGTTGAAATATTTGGATTTGAGCTCATGC
TCTTGTTTCACTGATAGCGATATTGAAATTTTACTCGGACGAGCTCCTTC
ACTCGAATATCTTTATTTACGACTATGCGATTCCATTTCTAACATTGGTA
TTGAAACAATAGCTAGACGGTGTCCTAATTTAAAGGAGATTAGTCTTAAC
GATTGTGTTAATATCACTGACCATGGCGTGTTGAAGTTACTAGATTCCTG
TCATAATTTACGATATGTCAGTCTCGCAAAATGTCCCATTACAAATATGG
TTTTGGAACAAATTGCATCATCGCCAAATAATTTATTGAGACATTTAAAC
CTTTACGATTGTGAATATATTACTGATATTGCTATCATGAAATTGTCTGC
ATCATGTCCTAGACTACGCTCTCTTGATATTGGAAAATGTAGAAAATTAA
CGGACGCTTCGTTGTACGGACTGTCTCGTTGTACATTGTTACGGAGATTG
AACTTAAAAGGTTGTTGCAAAGTTACAGATGCTGGGTTGAGGAAATTAGC
CACTATTTGTAAGAATCTGCGACATCTTGATGTTAGAGACTGTTTATTCT
CACCAGAGACTTACGAATATGTTCGACTTCGTTGCCCGTTGTGTGATATA
CAACGCTCGTATATACATGAATGCTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1196MSTRG.1196Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1196.3.p1MSTRG.1196.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1196.3.p1.exon1MSTRG.1196.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1196.3.p1.exon2MSTRG.1196.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000006_pilongenomesc0000006_pilon:30242..34388 +