MSTRG.11959.1.p1 (mRNA) -

Overview
NameMSTRG.11959.1.p1
Unique NameMSTRG.11959.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000088_pilon:776519..778695-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11959.1.p1 ID=MSTRG.11959.1.p1|Name=MSTRG.11959.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2177bp|location=Sequence derived from alignment at sc0000088_pilon:776519..778695- (Clytia hemisphaerica_ch_hm2_pilon)
AATTTTTGAAGGGAGGTTATTTTCTTCCATGAACAAAAACTATCGAATAT
TTTAAACTCATTTAAAAACAATTTGAAATAAAAGCACATGGAATTCAAAG
AGGAAGATGGAAATTGAAATAAAATGAATAATGCTGAATCTAAGATTTTA
GTTGAAAATTTCATCAGGACTTTCTACAGCTAATGTGTTATCATGATATG
GACTTAATAGAATAATCTACTAAAACCACGAGACCGAAAAAGAAGTTCAA
CATAGAGTAAACCAACGAAAAACAAGGAACAAAGAAAAGGGTTAATCATC
GAACGACCATATTGCGCTATCGAATATAATAAATGAAAACAATAGATTGT
AAAAAAGGACAATAGCAAAGAAAATAATGGATGTGATGGAAAAATAAATA
GACAGAGAGAAAAAAAAGACAGAGGAATGCAGATCAGAGTCAAAAAAGCT
GGACTAAATTAAAAGCCATCAGGAACAAGATTGTCATATAAGAAGTTATC
TTGTGAACAATATTTTACAAAAAACGGCTGGTCCGAAAGGAAGATTTTTG
TTGTTTTCAAGAGAAGAACAAAGCAAAAAAATTTGACCATCTTTATTATT
GCCGAATATTGTTTTTAGAAACCTGTGTTCCTACATTTATTTTGTTCGAA
GAGGATTATCAGGCTGTCACCGTATTATCATAATAATATTTTGTGAGAGG
GATAGGATCGGAAGGTCATATGTTCACATACGCTAATATAAACAATCTCC
AAACATATGTCATCTTCTCTACATTATGGGGGAAGCTTCCCTTTACCACC
ACTATCCGCATTCAGCTCGTTACATAGTAGCAGCCAGGCTGGACTAACGA
GTGGGGCACCTTACTCAGGTTACGGACAAAGCAACGGAGGGGAGGAAACC
AAGGAGCAGTATCAACACAATGGAGTATCATCCGTACCGATGCCTTCTCT
ATCAATACCGCCAGCTACACCACCCTACCCTTACAACCTTTCTTCATCCT
ATCCACCACCTTTCATGATGGGGGAACAGAATGGTAGAAGCTTCCACCGG
AACGAACCAAACTTCTATCCATCTCGTAATATAGAGCCAGCGCAACCATG
GGATAGGCAGTCGCACGGGATGCCTCCAGAGGGGCCTGGACAATACCCGA
GAATGATGTATCCCCCACCCTGGCAAAATAACTTTAATGGTCCTACCAAC
AATCGACCGCGCCAACCGAAACCTAAACGTCCACGTATGAGCCTCCAGAA
ACGTCTTCTAGTTAACGCCCGTGAACGGGACCGTATGAGAGTCTTAAACA
AAGCGTTTGAGTCCTTACGTGATGCGTTACCGTGTTACATAGCTGACGGA
CATATGGCAAAAATAACTACACTAAGACTTGCCATCAATTATATAAAAGC
GTTAACTGACTTGCTTAATGAACAAAAAGTTATCGGTAATAAAACGGGCG
TTATGAGAAAAGAACGAAGTCACGAAGAAATATTTTCAACCATTTTGAAA
GACTCAAAAGTGGATGGCGTTAAACCTGTTCTGAAAAACTTGGATGAAAG
ATTGGCGATTCCAACTCTTACGCATCAACACCACCCTGAAATGTTTGATA
ATTTCTCGCAAGTTATGCAGTATTATTGATAGTCAGTTTCAAGTCATTTA
ATTTTTTAAAGATCTTTTTTATTTATTTCGTAATTTCATCTTAAATACCA
GAGACTTTTTGAATCGATTATCATTTTGAATCGGCTTTTGGTAAAATTGG
AGAATTTTCGTTTTTCAGTAGAACATTTTTGAGTGATTATTCACTAAAAA
GTAGTTTTAAAGGTATATCTTAGCCAGTAGCTTTCTGATTTCATTTCATA
GAAATATTTATAATATAAATAGTTCAGTTTGAGAAATGATATTGCTTGGC
AGCCATATTTCCATTTGAACCTGTAAATATCTGAATTAATTTTAAAACTA
TTTAAAGAAGTTGTGTAATTATTGTTGAATTGTTTTTTATGATGATTTTT
ATTTCAAGGAAGATATTGTAAAAATTCAAATACTTCGAGACTGTTGTTAA
AAATTAAAGGGACCTGTAAAGATTCCATACACCTTTTCGACCGTAGCCTC
CAATTGCCGCGCAGACATTTTTTGTCCGTTTTTACCACCCTAAAACCGTC
CCAGTCTTTTTTTCTCGCCTAAAGGCA

Coding sequence (CDS) from alignment at sc0000088_pilon:776519..778695-

>MSTRG.11959.1.p1 ID=MSTRG.11959.1.p1|Name=MSTRG.11959.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=873bp|location=Sequence derived from alignment at sc0000088_pilon:776519..778695- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCATCTTCTCTACATTATGGGGGAAGCTTCCCTTTACCACCACTATC
CGCATTCAGCTCGTTACATAGTAGCAGCCAGGCTGGACTAACGAGTGGGG
CACCTTACTCAGGTTACGGACAAAGCAACGGAGGGGAGGAAACCAAGGAG
CAGTATCAACACAATGGAGTATCATCCGTACCGATGCCTTCTCTATCAAT
ACCGCCAGCTACACCACCCTACCCTTACAACCTTTCTTCATCCTATCCAC
CACCTTTCATGATGGGGGAACAGAATGGTAGAAGCTTCCACCGGAACGAA
CCAAACTTCTATCCATCTCGTAATATAGAGCCAGCGCAACCATGGGATAG
GCAGTCGCACGGGATGCCTCCAGAGGGGCCTGGACAATACCCGAGAATGA
TGTATCCCCCACCCTGGCAAAATAACTTTAATGGTCCTACCAACAATCGA
CCGCGCCAACCGAAACCTAAACGTCCACGTATGAGCCTCCAGAAACGTCT
TCTAGTTAACGCCCGTGAACGGGACCGTATGAGAGTCTTAAACAAAGCGT
TTGAGTCCTTACGTGATGCGTTACCGTGTTACATAGCTGACGGACATATG
GCAAAAATAACTACACTAAGACTTGCCATCAATTATATAAAAGCGTTAAC
TGACTTGCTTAATGAACAAAAAGTTATCGGTAATAAAACGGGCGTTATGA
GAAAAGAACGAAGTCACGAAGAAATATTTTCAACCATTTTGAAAGACTCA
AAAGTGGATGGCGTTAAACCTGTTCTGAAAAACTTGGATGAAAGATTGGC
GATTCCAACTCTTACGCATCAACACCACCCTGAAATGTTTGATAATTTCT
CGCAAGTTATGCAGTATTATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11959MSTRG.11959Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11959.1.p1.exon1MSTRG.11959.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11959.1.p1MSTRG.11959.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088_pilongenomesc0000088_pilon:776519..778695 -