MSTRG.11929.1.p3 (mRNA) -

Overview
NameMSTRG.11929.1.p3
Unique NameMSTRG.11929.1.p3
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000088_pilon:425792..431045+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11929.1.p3 ID=MSTRG.11929.1.p3|Name=MSTRG.11929.1.p3|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5254bp|location=Sequence derived from alignment at sc0000088_pilon:425792..431045+ (Clytia hemisphaerica_ch_hm2_pilon)
CAGGTAGGAAGTTCAAAACGGAGGAAGTACGCAACCGGATGCTCCGCTTT
CAAATGCCGTACCTCAGACTCAAACCCGACGATTTTTACGAGAACATGGA
TGTCGAAACTTTGACTCGCGAGCTGGCCAGGATTGGAGAAAAGGGCAAAT
CCACAGTCGACTTGAAGGCCTTTCAACGTCAGAGGACCCTTGCATGTTGG
CACGATACATCTGGCATTTGTAATTCATCGCATTTGCATATAATGTTTTG
CACAATCTACGACCGTGCTATATTCTTATCGCAGCAAGAATATTTCGAAA
AAACAGGTAATAACCCTTGATTATCATTATACCTTAGAATTCATATTTAT
CGGCGTGTGCTACTCAGCACcgcgaaatatatttttgaaaaaaaaagttt
attgtttcatttttgtttcttgtcaAACAATGTAACCTTTTAAGACGTTA
TCAATCACTGATTTACAAGGTTTTCTCCTCATTAATtcggcaaaaataaa
aatcattagTCATAGATTAGATTGAGAATTGTTTTCGAGATAAAATTCGA
GATAAAATTTCGCTGAATTGGTTGCCATCTGGAATATTAAATGTTAGAAT
CCCCGCAAATTTAATcgtattgaagaaaaaattccagAACATTTGATTGA
TTTAGTTATTGATTTAACTTTCGTATCGTCAAAATTTGAGTTGTCGAATT
TGTAAAATATCGGCTTTATCTTTACGGGAGTTTGCACGACGGGCTTAAGT
ATGGGATGTTAGTATAAATTGCTTTTCATTAGTCTTAAATCTTGTCGCCT
TCGAAAATATTCCCCTTCCTTTTAATTATATGCCTTTTGCAGTAAATCCG
AGTGATAGAAGCCCTATTTTTCGGGATTCCATAAAGGGGACTGAAAGCCG
AATGAGTTAcgattttgatatttctctgCGCAATCtataaatatttctta
taaGCAGCTCCCATTTTCGGATCAGGGATGGGATGGcttgttttctgaaa
atttttcaatagacgatatcggcttaacgaaattctccccgaatgattac
ccatgatgcattgcgcaaaaaaattcagtaagtcaatatagtCCGTGAAT
tcttttgcgcaatgcatcatgggcaatcattcggggagaattcgttaagc
cgatatcgtctattagaaATGCACCCTTGATATTTTGTACCCTATTTGTG
CTTATCGGGTCGAGGGATATCGGTGGCCGTGCTTTGATAATCTAAAGTAA
AAAGCTTTTTCTTTCATGAGACTACAATCCCCACTGAAATATATTAGCAC
TTTTTGgtatttcaacgtttttttttaatttaaacctTCGGGAGGCTTCC
AGGCCTTCGctttaaaggaaaattttaagctTCCAGATCTAATTCTTAAT
tcatgttaaataaaatcatttgCGGTAATTTTAAGGGAATTCCCCTTTGT
GTCAAATATTACGGTATTCACTACCGTGAATTATCGGCCATATCCAGCCA
CTGTCGCATGGTTTCTTTTtctgtttcatgggacaaaaagttagggaaat
acccaaaaagaCACGCTCCCTGCtggaaaaaacttctcgtgtccccaagc
cttaaagaAACTATTCCAAgggtttttttgcaaattttgcacCCACATAT
TTCGAAGAATAGAATATTTTTGCCtcgaaaaggttcgtccactgTACGGC
AAGTTaatggaaaagcccatttcgaTACAGCCAATAATAGCGTGATTACT
CCGTAATAAACATGTCAATCAATTATTTATAGGGTTAAAGGTGAACGTTC
AGTCAGAAGTCGAAAAGCCAGTTACATATCTTTTATCCAGATGCCCGTCT
AGTAATTTACAACTATGCTACAGCAATCTGAGACTAGAAGATCTGGTGGC
ATGGAACAACAGCGAATTGTCTGTTTCGAAAGATATGAAAATCGTTGATA
GAGTGCGCTTTTTTAAGGGTAATGAATGTCGATAGATCTTATAATTTCTC
TTTTGAAACCCAGGGATTcatctaaaaaaagtttttctattttgaattcA
ATATAAAAGAAATAAGATTATACGGCCACttgatttatttcatttttttt
agtccaaattcaTATGAGATCAAaccagaaaaaaaactaatttgaaaacC
GTGTATTAGGACAAGCGAACCGCGCATGTTTCTCGGTGCCATCCTTATTA
AGTttgtacgcagtgaagggggaggGACCAAATTGATTATTGCGTGAATG
CAGATTCGCGAATTTGGCTTctaattgaccaaatttctttAATGTTCTAA
TTCCTAGTCGTTTCGGCCACTTCAGATATCTCTGGTTAAAATTTAAATCT
ACTTTCGGAAATATATCGCACGAACTAGAAAGAGACCGCTAAAATAGACT
AACTCTTACAATACATcccttcttacagacccactggaaataTTGGCCGA
AATaacgtccccggtggaaaattaccccccaatttttgtccccactgaaa
ataatcaaataaatattaactatttttcccatccccctgaattttctgac
ttaaaaacaaagaattgaaatccccagccattaaaatacgggaatatcaa
tccccatcgagtttcagtccgttctTTTCATTACCACTGGCTGAAGAAAT
cctatcgggtctgtgagaagggggtgttataatGTATTAAAAGGGAGGTT
AGCTGGGCGCTATAAACCTTATGGCAGAGTACTTCCTAAAGTATATAGTA
TAACTGTCTTTATCATTTTCGCAAAATCTGTCGAacgaaatttgttcaaa
tttctttcaaacGAAACTTTAATTTTAGGTGATGGACCTGCGTGTCAACT
AGAAGCAGGCCATCAGAAAGGTGGCAATTATTATTGCTGGTGTTGTGATA
TGAAGGCCTCTCGTAGCGCTGACCTGGCCTACGTATTCGGGTGCACCAGA
CAATCACTCCAAGATAAAATAAACAGATTAACCAAAACTAGGTAAGGAAT
TAAAGAGGGTCAACTTTTAGCAGGCTTTTCATGTGTGCGAAGTAGACCAG
AAAAGCTTAATATAAATCAAATGTGATTTAGGGGGAGGTTTGAAGTGGCA
AAGTAATGTTCcacactttctttttattttaccaaaaattttaGCTATGG
AAAACAATGTGTACATAATCAAAAAATGTCGATACTTGATGGCATTCCAA
AGGTAGAGATCGtggaagaattgaaaaaacGTGGCGTCCAAGTCAACAAA
GACCAAAATAAAGACGTGGTTTTGAAACAGCTCGAAGATATTTTCGCAGG
TAAACACGATGTTTCAATCCGAAAATGTTGAagcaaaaacatgaaaacag
cacaaaacgttgtttttaATTCTCGTCTCGGTTTCTTGTTTAGGAGTCCA
ACACCTTCCAGCATTACTGTTCGAATCGGGAAAGACAAGCCTTGAAAAGG
TCGGTTTGGAATCGTACGAAGTACTTGCATGCGACCCTTTACACACCTTC
AAAGGTTTGACGACCAATCTTTACCAAGAGATCCCTCGTCACCTTCAGgg
cgaagaaaaaaatctttttaaggaCTCGGCGCGAGCATCCTTTCATGGCA
AAGAGGCAAAAAATGGTGGAGACTACAGGCGAAGCCTGGTGGACCTGACG
ATTTACTTGGATGGAGAAATGACTGATGCGTACGTCAAACTCATGAGGCA
GCTCGCTGAATTACAAGAAATTGCATATTCCGGTGAAGAAAAGCGTACAG
CCAAGTCGATTTTACGCTTCCACAACGTGTCATTCTTGCACGCAGACTTG
ATGATTGAGCTTTTCGAAAAGCAGAAATCCATGAGCCGAAGAAAACTGTT
TGGACAGTACAACCATTCGCTGACCAGTCATGCGCCAATCCAATATCGGA
TTCTGGATTTGGTTTCGGCAAATACTGAGCAAGAGGAGGCTGCATTCAAT
TTCATGAAAGAAGTCAGTAAACACGCTTCCAATCATCATCCCGATAATAT
ACTGCTGACCTGCTTTCTTCGTATCCAAATCCGAGAAGACTGGCAACGTC
ACTTGGGCATCCTGAAAAAGGAAACAAGAAATGCTATTAGCAAACACGGC
GATTTGTTAACATCGGAGAGATCGAATACTTTCGTTCCATTCAAACTGAT
GCgactaaaaccgcgaaaatggCAAAGCCAGCTAGAGAGGATATGTGATT
ATTTATTAATTGATGGAATTTGGGAGGAGATTCAAAATGGGATAATATTT
CACGACCTTGACGAAACCATCAACTACCCTCCCCCTCACCATTTTCGTAG
CTACACTATATCACAAGAACGCCAGtaactatttttttctttattcgtaC
AACGAAATTTTAATTCAACTTGACTTCCAGATAATGACTTCTACCTATCC
CAATACACTCTTTAGATGCAACATTTGCCACTAAATCGTCCAGCAGTAaa
ggaaaaattaagaaaagcaatgaaagtaagtttttttctaataccttaaa
ggaagaaattttggcgggaatttaatttggcggatggccaaaaaagtttt
ttcagagggaatttaatttggcggatggacaaaaaaaataaatttggcgg
atggcggaaaaaataaattttggcgggaacttaatttggcggatttcagt
caaatttgccaaatccgccaaatccgccaaattttctttcaaaatttttt
ttatttaaaaaagacaGTGATATTAGGAATTGATCCAATATACTCATTTG
ATATCTGACTATATAAATTTTTGTACTAGATGCAGTCGAAATCATTAAAA
AGCCGATGCCATCAAAAACAAGCCTCCttttaaataaagtttttgGAGAG
GATCAGGTTGTCAAAGATTATCTTATAATACGTGAAAAGTACAAGCAAGA
TACAAAAACATACGAAAATGACTATTTCAACTCAATCGCACAGCTGGAGg
tgaaattaaaatcaaaaAaaaataaaactgaaGAAGAACTACAAAGAATT
GAGATCAATTCCCTGTCAGAAGACTCCATTGCTGTAAATATTGGAAACCA
AGACAAGATTACATTTGAGCAGTTGAAGAATCAATTGTTGATAACCGATT
GCCTGCTAAAAAATCTAATTggatcaaaaaaaaaattattataaatttta
taattaCCAGTTCCTGGTGCCAATTGAATCAATTAAACGTAAtcaaatac
cttaagggaacttatttagacaaaattcgccaaaattaggtttttaaaat
tttc

Coding sequence (CDS) from alignment at sc0000088_pilon:425792..431045+

>MSTRG.11929.1.p3 ID=MSTRG.11929.1.p3|Name=MSTRG.11929.1.p3|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=339bp|location=Sequence derived from alignment at sc0000088_pilon:425792..431045+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCCATCAAAAACAAGCCTCCttttaaataaagtttttgGAGAGGATCA
GGTTGTCAAAGATTATCTTATAATACGTGAAAAGTACAAGCAAGATACAA
AAACATACGAAAATGACTATTTCAACTCAATCGCACAGCTGGAGgtgaaa
ttaaaatcaaaaAaaaataaaactgaaGAAGAACTACAAAGAATTGAGAT
CAATTCCCTGTCAGAAGACTCCATTGCTGTAAATATTGGAAACCAAGACA
AGATTACATTTGAGCAGTTGAAGAATCAATTGTTGATAACCGATTGCCTG
CTAAAAAATCTAATTggatcaaaaaaaaaattattataa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11929MSTRG.11929Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11929.1.p3.exon1MSTRG.11929.1.p3.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11929.1.p3.exon2MSTRG.11929.1.p3.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11929.1.p3.exon3MSTRG.11929.1.p3.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11929.1.p3.exon4MSTRG.11929.1.p3.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11929.1.p3.exon5MSTRG.11929.1.p3.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11929.1.p3.exon6MSTRG.11929.1.p3.exon6Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11929.1.p3MSTRG.11929.1.p3-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088_pilongenomesc0000088_pilon:425792..431045 +