MSTRG.11916.1.p1 (mRNA) -

Overview
NameMSTRG.11916.1.p1
Unique NameMSTRG.11916.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000088_pilon:226068..228670+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11916.1.p1 ID=MSTRG.11916.1.p1|Name=MSTRG.11916.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2603bp|location=Sequence derived from alignment at sc0000088_pilon:226068..228670+ (Clytia hemisphaerica_ch_hm2_pilon)
GTTTGAGAGAAATCTTCGATTCCattcaaaaattgttgaaaaatttatta
atttctctttttcatgatcgtcatttatgaggtttttcttcttcattttc
gtattcatttcCATTGCTGTAACACAAATTGATTGTTTATTGAGGGAAAG
AGTGATGGTGAAGAAGATGACCTTCCACTTTCTCACGCCTTCGAGAAAGA
TTGCTACGTCTCTATCGCTGGTTGGCtagtttaaaaaaaggttttgatga
tttcgttgCAGATGAATATACAAACGacattttaacatatttttcgTTAC
ATTGGATTGCATCTCTCGATAACCAACttgctgaaaaacactgaaaacaa
aaaacaagtacattttcatcaaatatttcaaataactttttaaagaaaCG
TTGATCTGGTACTTAAAGAGACAATATTTGGATGGCAAGATGCTCCTCAA
AGGGTTGTTATTTATCTCAGTTCTCGCTCTTTTTGTCAGTTGGACCGAAA
GTAAAGAATGCAGGGATACGGACAAACGTTGTAAACAATGGGGAGCTACC
GGAAACTGCTTCAAAGATCAAAACCTCCGGAAAAAGTGCCCGGATGCTTG
TGGATTATGCCGGACACCTGATGAGGATGAGATCTTACGTAGCGTACATG
CTTCAACAGAACGAACTATCCTTTTGGTTTATCTGTTTATTGGGTTCATT
GCAACAGCTATTGTTGTGACCATCATCCGTCTTATGAATACGGGTGGAGT
GTGCTTATCCAAAGGTACCATGAAAGATAAGCTTGTCGTCATAACGGGAG
CGACCTCAGGCATAGGGTTGGATACAGCTTTTCATTTAGCGTTACGGGGT
GCGAAGGTTGTCATCGGCTGCCgtaatttgaaaaaaggtttcaaagtCGC
CAAAGATTTACGTAATCAAACGGGTCAGAAGTTGATCGAAGTTCGCAAAC
TTGATTTGACCTCGCTCGTTTCTATTCATGAATtcgctgacgtcatcaaa
gaaGAATTCCCGAAAACCGACGTCTTGATTAATAATGCCGGAATCTACGG
CAGCCGAAAAAGAGAAGAAACGGAGGATGGGTTAGAAAAAACTTTCCAAG
TGAATTATCTCGGACATTTTTATTTGACCAAGTTATTGAGTCAAAACATG
AAAGAGAATACACCTTGTCGTGTCATAAATGTCGTGTCAGATGACTTCAA
GAAAGGCGACCTggatttcaaaaatcttcaaggATTGAAAGGCTATAGTA
ATACAACCGCCTATCGCAACGCCAACCTGGCCAAGATGTATTTCACCAAA
GAGCTTGCAAAAGTCTTCAAAGATTCGGGAGTAACAGTGAACGTGGTGAA
CCCAGGGACGGCCGTCACTAGTTTGTGGAAAGATATCTTTCCTTATAACT
GGTTCATAACCTGGTTCCTCATCTCACCTTATTCTTATCTGTTTTGGAAG
AGCTCGAGTATGGCGGCCGAAACAGCCTATTATTGCGCTTTAGATCGTGG
TTTAGAAAAAGTTTCTGGTAAATATTTCAAAGACTGTAAAGAAGAAACTT
TCCCCGAGCTCGAGGATGAAGTTGGGCGTAAATTATGGGCGGTTAGTGAA
CGCCTACTGACCCCAAAAAGATTGTCCACTTTGAACCAAGCCGCCATTAA
GAGGGCGTTGAATGATATCGCTGATGCTGAGGCTGTTAAGGACCGAGGCG
AAGAGAAAGTTTCCGAGGCGGAAACTGCACAGTCTAATGGAGATGATGTC
GCGGATGGAGCACAGGCTGATGTTGAAGATGTCGTGACGAAAAGTTCGAA
AGTTTccatcaaaaagaagaaaaagattagCAAGAAACCAAATATCGGAA
ATAAAAACGCTGTCGACAGTGTTGAGCAAACCGGTGCAGAAAACACCGAT
ACAAAAAGTGAGAGTAAAACCGCTAGCAGTACCGAAAAAAGTGGAAGTAA
GACCGTGGAAAGCACAGCATCGAGTACTATGAAGAAAACAGTGGGTATTG
AGAACTCCCTGGCACCAAAAGAAAAGAATGTAAACAAAGAGAAACGAAGC
CCTCGCCCTGGTAAGAAAGGAGGTGAGTCCAAAGATACTAAAAATGATGT
CGATGGGAAAGGAGAAAACGCTGGTTCTTTGAGAAATCGAAAACCCACAA
CCtccaatgataaaaaaaatggaACTGTCACCAAAACCCGGAAAAAAGCT
GCTAAGTAGAGATTAATGTAGACTTTTAATTCCAATGCTCGTGACATTGA
CTTAGTGACATTGACTATGAGCTTTTTATGGCTTGAATAACTAAAGGAAA
TCCTCAGACTCAGTTCAGTAAGAGGTATGCGTGACTTTATTAAAGCGGAG
AAGACTGTGAATTTTGCTGGATAGAAATTATGGGCTCTATGTTCCAGGAA
TATCAGTATGGCTTAAACTTATACAGGTGAACTTTGGAGAAAGACACGAG
CTCTAGCTGCTTGTAAATgtgatttttagattttacaaCGTATGTAAATT
AATATTTATAAAGATTTAGATAGATAGTGAAATAATATCGAAATGATTGA
ATCGCTATTCATTAATAATaaaggttttgattttgaaaagtaGCGTCTAA
AAG

Coding sequence (CDS) from alignment at sc0000088_pilon:226068..228670+

>MSTRG.11916.1.p1 ID=MSTRG.11916.1.p1|Name=MSTRG.11916.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1770bp|location=Sequence derived from alignment at sc0000088_pilon:226068..228670+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCTCCTCAAAGGGTTGTTATTTATCTCAGTTCTCGCTCTTTTTGTCAG
TTGGACCGAAAGTAAAGAATGCAGGGATACGGACAAACGTTGTAAACAAT
GGGGAGCTACCGGAAACTGCTTCAAAGATCAAAACCTCCGGAAAAAGTGC
CCGGATGCTTGTGGATTATGCCGGACACCTGATGAGGATGAGATCTTACG
TAGCGTACATGCTTCAACAGAACGAACTATCCTTTTGGTTTATCTGTTTA
TTGGGTTCATTGCAACAGCTATTGTTGTGACCATCATCCGTCTTATGAAT
ACGGGTGGAGTGTGCTTATCCAAAGGTACCATGAAAGATAAGCTTGTCGT
CATAACGGGAGCGACCTCAGGCATAGGGTTGGATACAGCTTTTCATTTAG
CGTTACGGGGTGCGAAGGTTGTCATCGGCTGCCgtaatttgaaaaaaggt
ttcaaagtCGCCAAAGATTTACGTAATCAAACGGGTCAGAAGTTGATCGA
AGTTCGCAAACTTGATTTGACCTCGCTCGTTTCTATTCATGAATtcgctg
acgtcatcaaagaaGAATTCCCGAAAACCGACGTCTTGATTAATAATGCC
GGAATCTACGGCAGCCGAAAAAGAGAAGAAACGGAGGATGGGTTAGAAAA
AACTTTCCAAGTGAATTATCTCGGACATTTTTATTTGACCAAGTTATTGA
GTCAAAACATGAAAGAGAATACACCTTGTCGTGTCATAAATGTCGTGTCA
GATGACTTCAAGAAAGGCGACCTggatttcaaaaatcttcaaggATTGAA
AGGCTATAGTAATACAACCGCCTATCGCAACGCCAACCTGGCCAAGATGT
ATTTCACCAAAGAGCTTGCAAAAGTCTTCAAAGATTCGGGAGTAACAGTG
AACGTGGTGAACCCAGGGACGGCCGTCACTAGTTTGTGGAAAGATATCTT
TCCTTATAACTGGTTCATAACCTGGTTCCTCATCTCACCTTATTCTTATC
TGTTTTGGAAGAGCTCGAGTATGGCGGCCGAAACAGCCTATTATTGCGCT
TTAGATCGTGGTTTAGAAAAAGTTTCTGGTAAATATTTCAAAGACTGTAA
AGAAGAAACTTTCCCCGAGCTCGAGGATGAAGTTGGGCGTAAATTATGGG
CGGTTAGTGAACGCCTACTGACCCCAAAAAGATTGTCCACTTTGAACCAA
GCCGCCATTAAGAGGGCGTTGAATGATATCGCTGATGCTGAGGCTGTTAA
GGACCGAGGCGAAGAGAAAGTTTCCGAGGCGGAAACTGCACAGTCTAATG
GAGATGATGTCGCGGATGGAGCACAGGCTGATGTTGAAGATGTCGTGACG
AAAAGTTCGAAAGTTTccatcaaaaagaagaaaaagattagCAAGAAACC
AAATATCGGAAATAAAAACGCTGTCGACAGTGTTGAGCAAACCGGTGCAG
AAAACACCGATACAAAAAGTGAGAGTAAAACCGCTAGCAGTACCGAAAAA
AGTGGAAGTAAGACCGTGGAAAGCACAGCATCGAGTACTATGAAGAAAAC
AGTGGGTATTGAGAACTCCCTGGCACCAAAAGAAAAGAATGTAAACAAAG
AGAAACGAAGCCCTCGCCCTGGTAAGAAAGGAGGTGAGTCCAAAGATACT
AAAAATGATGTCGATGGGAAAGGAGAAAACGCTGGTTCTTTGAGAAATCG
AAAACCCACAACCtccaatgataaaaaaaatggaACTGTCACCAAAACCC
GGAAAAAAGCTGCTAAGTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11916MSTRG.11916Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11916.1.p1.exon1MSTRG.11916.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11916.1.p1MSTRG.11916.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088_pilongenomesc0000088_pilon:226068..228670 +