MSTRG.11898.1.p1 (mRNA) -

Overview
NameMSTRG.11898.1.p1
Unique NameMSTRG.11898.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000088_pilon:28546..31580+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11898.1.p1 ID=MSTRG.11898.1.p1|Name=MSTRG.11898.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3035bp|location=Sequence derived from alignment at sc0000088_pilon:28546..31580+ (Clytia hemisphaerica_ch_hm2_pilon)
agGGAGCCAgcttccaaatttcaaaagtgataCTTTAGCTTCTTATTGTA
GATTTTTAGGCCTCAACTTTAGtaataaaatttcaatctttatAGGTCGG
AATACCAGACGGTATGGAAATTAGCAAAAGCCGGCTCTGCTTATTTCCTG
ACACAGCTATGTAAGATGTTGGTACTGGCGACATTTTTCCCGATGAGTGA
AGGAACACAACAACCACAAATGGATGTTGTGGGAGAATTCATGAAATCCA
CCATGGACTTGAGTGATCTGTTAGGCCTTCACCTCTTGATGCTTCGAATC
CCTGGTCGTGGAGAAATGAAAGTATTGGTTGCTGGCCTTGGTATTTTACT
CTCCTTTCAATGTTTTATATGCTTCACTTCATTTCTGATACAAAGAGCTG
Tattcaaagaagaagaaaaaaaagccatttttttatcttaatttgaaaaa
agttttgcttAGGGACAAATTATGTCACTGTGCCCAGAATTTTGTCATCA
AGGTATGAAATGCATTGgtgataaagttttttttcatcaCAATTGTTTTT
AGGTTGGGCAACAGCAGAATACTTGACGACCAAATTGATTCCACTTTGGG
TTGGTGCAAGAGCTATTGAGTTTAATTGGATACACACACAACTTAGTTTT
GATGCCAATATCAGTCTTGTAAGTTTACTCATGACTCCCTCCAATTAGGT
TGTGATTTCTTCacagcagcagcagcagcagcagAATTACTTCATATTTT
TCAGCCTTTAGTTTGTCTAATGTTTGAGACTTTATGTTTTATTTCTAAGT
GTTTAAGGTTTTGAATGATTTCCCACGTCACCTAAGAATCCCCTGAGAAT
TCAACAACTTGGTATCCTAATTAAGAGGCCCACAAGTGTCCATCAAAAAA
gcaaatataacaatagcgttcagtttgaggtcgttgttgttattttctgc
ccgcgtagtttgattattcgcccgatagtgtcattttggcccgacgcgaa
gcggagggcgcaaatggcactagagggctaataatcaaattgcaaatcgc
aaatgacgttattgccctatacccgggccgttaatgatattttagccctc
tgaagcctggcgctttagttttctcagcgcgggtatgacaatttgagtca
caaaacctttcaatactGCCCGCCGCTTgaacctttaatggcttacttaa
tgaccgctatatggataataatagaaTGTAACATTTTAACATGTCCTAAT
TTATAATATGTTTTAAGACCAATATTCTCCTTTTccctttaaaattaatt
ttagtgttttgggaattagatAATGCACTGAATAAGctaatttttacata
agtgtttccatTTCATATTAGACACATGTTTTATATCAGGCTGGTGTCTC
CCAATTGTGTTCAATTTTATGCTGCATTtataatcaaaaaattgttgttt
ttgttcGTTCTTTCTAACGCATATTGCTTCACTTTAACACTCTTTTTCTA
TGATGAACTGACATTCGTTTTGTTTTCTCCCTTCTAGATTTTGTATTTAT
CGGTAGCAGCGCTGATCTGGTTATGGTCACGAACAGACTTACAAAAAATG
TATACACCTGTTGTTTTCGTACTGCTCATGTTCTGCTCATACAGACCTCT
CGTTTTAGAGTAAGTTATCTGCTATTATCTATCAAATTTCCTATTTCCTA
TCCTGTCCTAGTGTCATGATACAGTATATGCTTAGTATTTCTTTTGGATC
GTAATCAACTCCTTGAAAGAGCATCTCTCATCTCGACATTGCTATTCTAT
AAATTCCTATACCTTTAATTATCCATTGAACCACGACATTGGAAACAGTT
GAGTTTTCATCATATCTTACTCATTTCGTTTATGTAGTCCATATCCTCTC
TGATTCTTCAATAGTCCAAAGTCAGAGAATGCAGACAGTCATTAGCGCTT
TCTTTTGTAGAGAAATATTTTATCTCCATTCATGTCATGGCTCAGGGCGG
ATCCTATGGCTGctcaaaatttcctcaaaaataaaaaaaaataaaaagtt
atgaagCTTTTTCTCGTCGAAAACTGGCGAGCGTTGGTTATCCACATaag
tttttcccattttgaATTTGACCTGAAAATAGAACAGATACTTGACTCCC
GCACCCTTTCGTGACtttttttGTCTCACCTTCTAGTATTTTCCCAAAGA
TGAGAGAGAACCTGGCACTCATCCACTCGTATTGTTCCTGGTGACGAATT
CCttactttttctcatctttcaGAATCGTTTCTTTCGCATTCGGATTATC
GTCATGGAACCTGCTCTTCTTCAAAGCCATCTACACCAGTGTCATCGGAG
CCATCACACTCCACATCTATATCGGACTCGTTAAAACATTGAAGACCTAT
TAAACTCCATATCAAATTTATTCGAAACTTTGAGAGCTTGCCTCTTGAGA
TGGTTACTTTACTGACGTTTGAAAACTTTGGAACTTGGATAAAATCTTTT
ACAGATATCCATGACTACTGGATCCTGGGTAGACTTACCAGAGAGCATGG
AAGATTTAATGGACTGTTGTAAAGTACGATGAAATAGCAAgtctttttta
gcaattttaatatctcattttttaaaccagtaacagttggtagatttttt
gttttgagcaGCCCACAATGTTGTAACTATTGAGTTTGGCTGATAAAAAT
GAATTGTTAAAAATTGTATTGTAAATGATTTTCCTCTTGAAactACaGGG
TGTCCTGGCAGATTGCTTCTCCTGATTTGTATCTTTAACCCTTCACACAA
AGGGTGAATGTGTATACACGTTCTGAAAAGCCCATTTTATATACTGCACT
TTATGACCTAAAGTTGTAAAACGTTGTAAACGTGAAACcagtgaactgtt
atcagatagaataacATTTTACTTTGGCTGCTTCACTGTCTATTCAGTTT
CCttttggtcgtaaaaacagtttctcaaaatctgaagCGTGGATAAAATT
CTCTTTATAAGGATATATTTTCACTACATTTTGTC

Coding sequence (CDS) from alignment at sc0000088_pilon:28546..31580+

>MSTRG.11898.1.p1 ID=MSTRG.11898.1.p1|Name=MSTRG.11898.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2172bp|location=Sequence derived from alignment at sc0000088_pilon:28546..31580+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTGGTACTGGCGACATTTTTCCCGATGAGTGAAGGAACACAACAACC
ACAAATGGATGTTGTGGGAGAATTCATGAAATCCACCATGGACTTGAGTG
ATCTGTTAGGCCTTCACCTCTTGATGCTTCGAATCCCTGGTCGTGGAGAA
ATGAAAGTATTGGTTGCTGGCCTTGGTTGGGCAACAGCAGAATACTTGAC
GACCAAATTGATTCCACTTTGGGTTGGTGCAAGAGCTATTGAGTTTAATT
GGATACACACACAACTTAGTTTTGATGCCAATATCAGTCTTATTTTGTAT
TTATCGGTAGCAGCGCTGATCTGGTTATGGTCACGAACAGACTTACAAAA
AATGTATACACCTGTTGTTTTCGTACTGCTCATGTTCTGCTCATACAGAC
CTCTCGTTTTAGAAATCGTTTCTTTCGCATTCGGATTATCGTCATGGAAC
CTGCTCTTCTTCAAAGCCATCTACACCAGTGTCATCGGAGCCATCACACT
CCACATCTATATCGGACTCGTTAAAACATTGAAGACCTATTAAATGTTGG
TACTGGCGACATTTTTCCCGATGAGTGAAGGAACACAACAACCACAAATG
GATGTTGTGGGAGAATTCATGAAATCCACCATGGACTTGAGTGATCTGTT
AGGCCTTCACCTCTTGATGCTTCGAATCCCTGGTCGTGGAGAAATGAAAG
TATTGGTTGCTGGCCTTGGTTGGGCAACAGCAGAATACTTGACGACCAAA
TTGATTCCACTTTGGGTTGGTGCAAGAGCTATTGAGTTTAATTGGATACA
CACACAACTTAGTTTTGATGCCAATATCAGTCTTATTTTGTATTTATCGG
TAGCAGCGCTGATCTGGTTATGGTCACGAACAGACTTACAAAAAATGTAT
ACACCTGTTGTTTTCGTACTGCTCATGTTCTGCTCATACAGACCTCTCGT
TTTAGAAATCGTTTCTTTCGCATTCGGATTATCGTCATGGAACCTGCTCT
TCTTCAAAGCCATCTACACCAGTGTCATCGGAGCCATCACACTCCACATC
TATATCGGACTCGTTAAAACATTGAAGACCTATTAAATGTTGGTACTGGC
GACATTTTTCCCGATGAGTGAAGGAACACAACAACCACAAATGGATGTTG
TGGGAGAATTCATGAAATCCACCATGGACTTGAGTGATCTGTTAGGCCTT
CACCTCTTGATGCTTCGAATCCCTGGTCGTGGAGAAATGAAAGTATTGGT
TGCTGGCCTTGGTTGGGCAACAGCAGAATACTTGACGACCAAATTGATTC
CACTTTGGGTTGGTGCAAGAGCTATTGAGTTTAATTGGATACACACACAA
CTTAGTTTTGATGCCAATATCAGTCTTATTTTGTATTTATCGGTAGCAGC
GCTGATCTGGTTATGGTCACGAACAGACTTACAAAAAATGTATACACCTG
TTGTTTTCGTACTGCTCATGTTCTGCTCATACAGACCTCTCGTTTTAGAA
ATCGTTTCTTTCGCATTCGGATTATCGTCATGGAACCTGCTCTTCTTCAA
AGCCATCTACACCAGTGTCATCGGAGCCATCACACTCCACATCTATATCG
GACTCGTTAAAACATTGAAGACCTATTAAATGTTGGTACTGGCGACATTT
TTCCCGATGAGTGAAGGAACACAACAACCACAAATGGATGTTGTGGGAGA
ATTCATGAAATCCACCATGGACTTGAGTGATCTGTTAGGCCTTCACCTCT
TGATGCTTCGAATCCCTGGTCGTGGAGAAATGAAAGTATTGGTTGCTGGC
CTTGGTTGGGCAACAGCAGAATACTTGACGACCAAATTGATTCCACTTTG
GGTTGGTGCAAGAGCTATTGAGTTTAATTGGATACACACACAACTTAGTT
TTGATGCCAATATCAGTCTTATTTTGTATTTATCGGTAGCAGCGCTGATC
TGGTTATGGTCACGAACAGACTTACAAAAAATGTATACACCTGTTGTTTT
CGTACTGCTCATGTTCTGCTCATACAGACCTCTCGTTTTAGAAATCGTTT
CTTTCGCATTCGGATTATCGTCATGGAACCTGCTCTTCTTCAAAGCCATC
TACACCAGTGTCATCGGAGCCATCACACTCCACATCTATATCGGACTCGT
TAAAACATTGAAGACCTATTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11898MSTRG.11898Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11898.1.p1MSTRG.11898.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11898.1.p1.exon1MSTRG.11898.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11898.1.p1.exon2MSTRG.11898.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11898.1.p1.exon3MSTRG.11898.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11898.1.p1.exon4MSTRG.11898.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088_pilongenomesc0000088_pilon:28546..31580 +