MSTRG.11886.1.p1 (mRNA) -

Overview
NameMSTRG.11886.1.p1
Unique NameMSTRG.11886.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000087_pilon:1238143..1239568-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11886.1.p1 ID=MSTRG.11886.1.p1|Name=MSTRG.11886.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1426bp|location=Sequence derived from alignment at sc0000087_pilon:1238143..1239568- (Clytia hemisphaerica_ch_hm2_pilon)
AAAAGAAACGTGCTATTGGTTTTGCTCTCCGTCACCTTAACTCTACTCAT
ACCTATAAATATGCCAAACGATGGCCTGCGATGGCAGGGATGATCGAAAG
CAGTAAAAATGGCGACTTTACATCCACTTGTTTTACTGGCCATTTTGCTT
GGTTCTTTTCTACAAAATGTGACAACGGATGATATCAATAATCTAAAGTC
ACAGATACAAGGTTTGACAGCTCATGTTTTACGAGCAAATCAAGAGATTC
AAATACTGAAAACCAAAGACCGTACCCGGAATACTTATTGTCAAGTAACA
TCTGCTTTATGTGGGAATTGCCTTTGCGTTGAGGACTACAACTTAGTTGA
GAAATTTTACTGCGATTGTCGAAACAAGCCTAAAGTGCGCGATTGCAAAG
CGCACTACGAGAATGGTGAAAGAATCAATGGTTTATATTTGATCCATAAC
GACATCAAAGGTAGGTTTGTCAATCATTTTCACTTGCGATACTTTTTGTC
TTGTTTATGCTGGGGCCAAATTAATATTTTGTTATACGGGGGGAAATGTA
AATTAAATTCATAAAATTAATTTCTTGTTTTATTTACAAATCAATTTCTT
TCTTTACTGGCAAATCTACTTATCTACTTAGGCTACCTTTCTTATTTCTT
TAACATTGTTTAATTATCTCCAGGTGCGGTTGTTCAAGTGTTTTGTGACC
AAAACGACGATAAAGGCGGATGGACGGTTATCCAGCGACGTGTTGACGGA
AGCACAAACTTCCAACGTAACTGGAACGCCTATAAAAACGGATTCGGTCA
ACTGCAACGTGAGTTTTGGTTGGGTAACCATCATATCCATCAACTCACAG
CACAAGCTTTTTTGAGGGGCACGACTGTCCGCTTCGACATGATCAGACGG
AGTGATTCGAAAAAAGTATGGGCCAAATATTCCACATTTTCAGTCAATGC
CGAAGCAACAAAATATCAATTGGCAATTAGTGGGTATTCTGGAATCGCCG
GCGACCATATGCGGAAACACAGCGGGAACAAATTCTCGACTTTTGATCAG
GATAATGACGATTACAGCAGCGATAATTGTGCGAGTAGTAACGATGGAGC
ATGGTGGTTCTATGGCTGCCATATGGTCAATCTCAATGGAGCATTTGATG
CTTTGCTGAATCAACACAGATGGCATGCGATTTGGTGGGGAAGTGACTAT
GACGATGGTCGAATGATGTTCTCCGAAATCAAAGTCCGCCGAAATTAAAG
CTTTGTCTTCTTGTTATTGTAATACATATTATGTGTTATATTGTAATATA
TATTATGTTATATTGTAATATATATTATGTGTTATATTTACCAGCAAAGA
AAAAGCCAATTTCCATCAAAATTGTTTATATTGTTATTTCCAAATTTATC
CATTTGAGAACCATACCAATGTTTTT

Coding sequence (CDS) from alignment at sc0000087_pilon:1238143..1239568-

>MSTRG.11886.1.p1 ID=MSTRG.11886.1.p1|Name=MSTRG.11886.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1854bp|location=Sequence derived from alignment at sc0000087_pilon:1238143..1239568- (Clytia hemisphaerica_ch_hm2_pilon)
GTGCGGTTGTTCAAGTGTTTTGTGACCAAAACGACGATAAAGGCGGATGG
ACGGTTATCCAGCGACGTGTTGACGGAAGCACAAACTTCCAACGTAACTG
GAACGCCTATAAAAACGGATTCGGTCAACTGCAACGTGAGTTTTGGTTGG
GTAACCATCATATCCATCAACTCACAGCACAAGCTTTTTTGAGGGGCACG
ACTGTCCGCTTCGACATGATCAGACGGAGTGATTCGAAAAAAGTATGGGC
CAAATATTCCACATTTTCAGTCAATGCCGAAGCAACAAAATATCAATTGG
CAATTAGTGGGTATTCTGGAATCGCCGGCGACCATATGCGGAAACACAGC
GGGAACAAATTCTCGACTTTTGATCAGGATAATGACGATTACAGCAGCGA
TAATTGTGCGAGTAGTAACGATGGAGCATGGTGGTTCTATGGCTGCCATA
TGGTCAATCTCAATGGAGCATTTGATGCTTTGCTGAATCAACACAGATGG
CATGCGATTTGGTGGGGAAGTGACTATGACGATGGTCGAATGATGTTCTC
CGAAATCAAAGTCCGCCGAAATTAAATGGCGACTTTACATCCACTTGTTT
TACTGGCCATTTTGCTTGGTTCTTTTCTACAAAATGTGACAACGGATGAT
ATCAATAATCTAAAGTCACAGATACAAGGTTTGACAGCTCATGTTTTACG
AGCAAATCAAGAGATTCAAATACTGAAAACCAAAGACCGTACCCGGAATA
CTTATTGTCAAGTAACATCTGCTTTATGTGGGAATTGCCTTTGCGTTGAG
GACTACAACTTAGTTGAGAAATTTTACTGCGATTGTCGAAACAAGCCTAA
AGTGCGCGATTGCAAAGCGCACTACGAGAATGGTGAAAGAATCAATGGTT
TATATTTGATCCATAACGACATCAAAGGTGCGGTTGTTCAAGTGTTTTGT
GACCAAAACGACGATAAAGGCGGATGGACGGTTATCCAGCGACGTGTTGA
CGGAAGCACAAACTTCCAACGTAACTGGAACGCCTATAAAAACGGATTCG
GTCAACTGCAACGTGAGTTTTGGTTGGGTAACCATCATATCCATCAACTC
ACAGCACAAGCTTTTTTGAGGGGCACGACTGTCCGCTTCGACATGATCAG
ACGGAGTGATTCGAAAAAAGTATGGGCCAAATATTCCACATTTTCAGTCA
ATGCCGAAGCAACAAAATATCAATTGGCAATTAGTGGGTATTCTGGAATC
GCCGGCGACCATATGCGGAAACACAGCGGGAACAAATTCTCGACTTTTGA
TCAGGATAATGACGATTACAGCAGCGATAATTGTGCGAGTAGTAACGATG
GAGCATGGTGGTTCTATGGCTGCCATATGGTCAATCTCAATGGAGCATTT
GATGCTTTGCTGAATCAACACAGATGGCATGCGATTTGGTGGGGAAGTGA
CTATGACGATGGTCGAATGATGTTCTCCGAAATCAAAGTCCGCCGAAATT
AAATGGCGACTTTACATCCACTTGTTTTACTGGCCATTTTGCTTGGTTCT
TTTCTACAAAATGTGACAACGGATGATATCAATAATCTAAAGTCACAGAT
ACAAGGTTTGACAGCTCATGTTTTACGAGCAAATCAAGAGATTCAAATAC
TGAAAACCAAAGACCGTACCCGGAATACTTATTGTCAAGTAACATCTGCT
TTATGTGGGAATTGCCTTTGCGTTGAGGACTACAACTTAGTTGAGAAATT
TTACTGCGATTGTCGAAACAAGCCTAAAGTGCGCGATTGCAAAGCGCACT
ACGAGAATGGTGAAAGAATCAATGGTTTATATTTGATCCATAACGACATC
AAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11886MSTRG.11886Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11886.1.p1.exon2MSTRG.11886.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11886.1.p1.exon1MSTRG.11886.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11886.1.p1MSTRG.11886.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087_pilongenomesc0000087_pilon:1238143..1239568 -