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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000087_pilon:1162186..1166261+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.11880.1.p1 ID=MSTRG.11880.1.p1|Name=MSTRG.11880.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4076bp|location=Sequence derived from alignment at sc0000087_pilon:1162186..1166261+ (Clytia hemisphaerica_ch_hm2_pilon)
GTGTGCTTGCAAAAATAGAAAGAAGGGGGACTGGGGTCTagattcattaa
aaaaaggggtaGTGGCTTAATTAAATGATTTGGCGATTCAATCCTTCTCT
TCTAACTTGTCAAGGTAAACGCTTTTAGCGAAAGGTGGTGTTGAAAGACT
TTGTTAACAAATTCAATAAATATGTCTGGAGAAGAAGGCGAGTCTAAAGT
ATCGACTTACGAGACTTATGTCTCCACACCAAGCGAGAGAACCGTTTTGC
TTGTGAAAGCACGCGGCGAAACATGGCGAGACAAAATCGGGCTTTACGAG
CCAACAGAACCAAATTTCTGGCGATACGTTTTTGCTGAATTCGTTTACAC
GTTAATATTTACAATTATTGCGTGTGGATGTAGTCTTAACTTGGGACAAC
CAAGGTCTGATTTACACCAAGCCGTTTGCGTTGGAGGGATTGTGGCTGTT
TTGATTACAGTTTCAGCTGAGAAATTGGGATATTTTAACCCAGCCTTGTC
ATTTGGGTTGTTGGTTGCCGGTGAAATTAAATTCGTTCGATTTTTTGTTT
ACGCTGCTGTTCAAGTCGCTGGCAGTAAGTATATATCATTCCCTTTTGAG
AATTTATGTTTTCACCAATGTTTTAGGAGACCAGGCAGGCTTTGTGTTTG
ACATCAAACTTTACAAACTTAAGTTCAAACTACTGTTGATCTGTGGACAT
CTGATTGTTCTTATTTCAAGGAGCTATACAGGTACCATTTTTTCAGAATA
ACTACAGGAGGGGTGGGTTTGCAGGGTTGTCGGGGGTGATGGTTTCACTA
CAGGCTAGTCTGATCACTTTTTTcagaacaaaatgaaaatctactaatta
agtgatattttatttaaaaaaatacttactgTAGGCAAAAGAGGAGCTAA
TATTCAAAAACTCTTCCGTCGTCACTATAATATACATCATTCAATTATCA
TAGTGGCATCTGAAATAGCATAGGACCTACAAAGTCCTTCTGCAAAGACA
TTTGGTTGCGGTACGGAAGATTATGGGTATGATCCTTAGCCGGAGAGGTC
CCATGCCTTTCTCTATCTCCTGTAGATATCTATCGCAAGGGAAAGCAGTC
TCAAATTTCATAGATCTTACGTCAATCTGACTTTAAATGAATAAGGATCa
cattttggtcaattttatgTAACTTCTCCTTATTTGAAATAGCAGTAACA
AAATACAACAAGACTTACTTGGTATTATTGTGAttgaatgtcaaaaaaag
ttcttGGCATGTATACGGACATGTTGAATCATGAATTTTTACATCCAATT
TAAACCTTTTAAAAGACGCTTGGTAACTTGATCAGGCCTggaaaaaatgt
aaagaaatttaAGTTTCAATTTTCGCCTTTTCAAGTTTATACGTGCAACC
GTGCAAAGTCAATAATGAGGTTTATCTTAAAGATCATGAAAAGTACATAA
CGAAAACAGtgtcgtttttcaaaatttatcccCGGGAATTAAATCCCGAA
AGGGGTCCGAAATGACCCAAACTATTTCATGATTTCGTCATCAACTACCC
AGTAAGACATTTTTAAACTAGACTCAAAAGATTGGCATTAAAACGTACTA
TATGGTCTCAATGGCATTGCTGACTCAGCTAAAATATCGTTTTGTGCTGA
CTCAGAAAATTAATCTTAAAACCTAAATGATTATCTTTTTCAAGGTTTGG
GCAATTTTTGAGCAAAACTTAAGTCTCCACACTCTTTCTAGGGTTAATAG
GTGTATAAACTAACTTTAATCGAAATCTATTTTCTACCCTGTTCTACCAG
GCTGTGCCGGAGCTGGTCTTCTCTATCTCTACACACCATCCAATGTCCGT
GGTCATCTGGGAACATTATCCATTCACGATGATCTGTTAGTTGGAGTTGC
ATTCGTGGTCGAACTCACTTTAACTTTCATTGTCATGTTAGTTATCATTG
CAGCAAGGGATCCGGACAACCAATTCTCTTTGTTACAATCTAACATGGTC
GTTGGTCTATCTGTAGCTGTCGCAATGTTGATGGGAGTAAGTGGATaaac
atacagttgacgctctctaaatcgacgttctactattcgacagGCTCCCT
TATTCAATGGAATTGAAAGTCCCCGTCaataagaaactctcataaacgat
gctcccttattcgataaagctcccttattcgataaagctcccttattcga
taaagcTCCCTTATTCGTTAAAGCTCCCTTATTCCCCTTGAatatcaaat
tagagagcgtcaactgtactacCACAGCTTAGAGTTCAAAAGTCAAAGAC
TCTAGAAACTATAACCGAAAGTTATACGTGTGCTCTTCTTGAGACTCCAa
cgcaaaattttgataatgtcAGAAAAACGATTTTAATTTCAAGCAATTGT
AATCAATGCCTTTCCCATAAAACGCACTATAAGctaccccagctggcaca
caaagttctttcaacgtcaatttaatgttcacaacgtccatttaacgtta
gatgaacgttgaaacaacgttgtgtgtcagctgggacaGGTATCTCTTAA
GAAGTAACTATTGTATGAAACTATTTAATCTCCCTTGCGTAACCAAACAC
TTGATAACTATCTTTTAGATGCCTTTCACTGGTGCTGGAGTCAATCCTAT
TCGTGCTTTTGGACCTGCAGCTGTTACTGGAAATCTTGTCCACGAACACT
GGGTAAGGCTTTTAAACACGTTAACCAGTTAAAAAACATCGAGAGACTTT
CAAAAACTCTAGTAGTACTGAGCTATCCACATAAACTGGACTTCATCGAT
TAATCTATAGGATCCAGAGCGTTCTAAATCTAGATTTAAACACCATGATA
GGATCCTAATTCACAAAGAAAGATTCTCTCAgggcatttttttcaaataa
aacgtTAATTGAAATCATGCCAATAGGGTACAGGTACTTCAACTGACCTC
AGCTAGGAAGATTTACTCATTCCTATCTTTCCTTGACAGGTTTACTGGGT
CGGTCCATTGGTAGGAGCATTATGTGCGTCTTTGTCTTACAAATACATTT
TCAAACTTGGTGAAGAAAAACCCAAAGAAAAAGCACAACCTATGCCAACT
GTTCATATGAAAATCAAAAGCACTTCAAACTCAAGTGTCTAAATGCTGAC
TATGCTGATGGCAGCTAATGATAATATTTTCTGATCGgtaaatttggcta
aaacatgCGGGTTAACTGTTTTCAAATGACTTTATCAATATTAGAAGCCC
AAAGAATATTGGCAATTCGTCATCCAAGACCCTTGTGGTAATAGGGTAAG
AAAGTGAAAGGAGTATTTCCAAGTAttaaaccattgagtttcaatccCGA
GGGGCTCATGACGAGACTCCTGGATAGGAAacgaaaccacttatttccaa
tccagaacgtccgcgcgtagtttttacacaaacgccggattgaaactaaa
atctatcgctagatttcaaaaattgtagTCCTTCAAAACAAAGGAACGGC
TATATACAATCCGTCgaattacggcgcgttctatgcgcgttttggatggg
aaataagtggcttcagtCCTCGAAATCAAGAGTCGCCAAATCTAATTTCC
ACCGAATCCGATTAATTTTATTATAGACCAAATAGAAACTCGCATTGTTC
TTTTAAATAATATTCCAAACTAGTTTTGAAATCTACAAACTTTTTGTCTT
TGTTCATTGttcttttattcaaaagtcttagATACCttatcttaattatt
tctatttgtattgttttaaatttatttgtgtatttatataatttaaaaca
tcaaaatctttatttaaaaataataaaatctatactaaaaaCCCCACGTT
CAACCTTAATTACTCCATTTCAAACTAACCCCATATAAGCATAAAACTTC
AAAGGCAGaacacaaaacacaaaaacaaaaacaattatacAAGTACTCGA
ATTTTTTCAGCCACttttttctaactcaaactagTGGTCGGAGTTCCATT
GTTCCGATCGAACCCTCTGAACTTTTTAATTATCGAGAAAATGGAGTGTC
AACCTTAATTATCACCTCAGCACTCG Coding sequence (CDS) from alignment at sc0000087_pilon:1162186..1166261+ >MSTRG.11880.1.p1 ID=MSTRG.11880.1.p1|Name=MSTRG.11880.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3504bp|location=Sequence derived from alignment at sc0000087_pilon:1162186..1166261+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCTGGAGAAGAAGGCGAGTCTAAAGTATCGACTTACGAGACTTATGT
CTCCACACCAAGCGAGAGAACCGTTTTGCTTGTGAAAGCACGCGGCGAAA
CATGGCGAGACAAAATCGGGCTTTACGAGCCAACAGAACCAAATTTCTGG
CGATACGTTTTTGCTGAATTCGTTTACACGTTAATATTTACAATTATTGC
GTGTGGATGTAGTCTTAACTTGGGACAACCAAGGTCTGATTTACACCAAG
CCGTTTGCGTTGGAGGGATTGTGGCTGTTTTGATTACAGTTTCAGCTGAG
AAATTGGGATATTTTAACCCAGCCTTGTCATTTGGGTTGTTGGTTGCCGG
TGAAATTAAATTCGTTCGATTTTTTGTTTACGCTGCTGTTCAAGTCGCTG
GCAGCTGTGCCGGAGCTGGTCTTCTCTATCTCTACACACCATCCAATGTC
CGTGGTCATCTGGGAACATTATCCATTCACGATGATCTGTTAGTTGGAGT
TGCATTCGTGGTCGAACTCACTTTAACTTTCATTGTCATGTTAGTTATCA
TTGCAGCAAGGGATCCGGACAACCAATTCTCTTTGTTACAATCTAACATG
GTCGTTGGTCTATCTGTAGCTGTCGCAATGTTGATGGGAATGCCTTTCAC
TGGTGCTGGAGTCAATCCTATTCGTGCTTTTGGACCTGCAGCTGTTACTG
GAAATCTTGTCCACGAACACTGGGTTTACTGGGTCGGTCCATTGGTAGGA
GCATTATGTGCGTCTTTGTCTTACAAATACATTTTCAAACTTGGTGAAGA
AAAACCCAAAGAAAAAGCACAACCTATGCCAACTGTTCATATGAAAATCA
AAAGCACTTCAAACTCAAGTGTCTAAATGTCTGGAGAAGAAGGCGAGTCT
AAAGTATCGACTTACGAGACTTATGTCTCCACACCAAGCGAGAGAACCGT
TTTGCTTGTGAAAGCACGCGGCGAAACATGGCGAGACAAAATCGGGCTTT
ACGAGCCAACAGAACCAAATTTCTGGCGATACGTTTTTGCTGAATTCGTT
TACACGTTAATATTTACAATTATTGCGTGTGGATGTAGTCTTAACTTGGG
ACAACCAAGGTCTGATTTACACCAAGCCGTTTGCGTTGGAGGGATTGTGG
CTGTTTTGATTACAGTTTCAGCTGAGAAATTGGGATATTTTAACCCAGCC
TTGTCATTTGGGTTGTTGGTTGCCGGTGAAATTAAATTCGTTCGATTTTT
TGTTTACGCTGCTGTTCAAGTCGCTGGCAGCTGTGCCGGAGCTGGTCTTC
TCTATCTCTACACACCATCCAATGTCCGTGGTCATCTGGGAACATTATCC
ATTCACGATGATCTGTTAGTTGGAGTTGCATTCGTGGTCGAACTCACTTT
AACTTTCATTGTCATGTTAGTTATCATTGCAGCAAGGGATCCGGACAACC
AATTCTCTTTGTTACAATCTAACATGGTCGTTGGTCTATCTGTAGCTGTC
GCAATGTTGATGGGAATGCCTTTCACTGGTGCTGGAGTCAATCCTATTCG
TGCTTTTGGACCTGCAGCTGTTACTGGAAATCTTGTCCACGAACACTGGG
TTTACTGGGTCGGTCCATTGGTAGGAGCATTATGTGCGTCTTTGTCTTAC
AAATACATTTTCAAACTTGGTGAAGAAAAACCCAAAGAAAAAGCACAACC
TATGCCAACTGTTCATATGAAAATCAAAAGCACTTCAAACTCAAGTGTCT
AAATGTCTGGAGAAGAAGGCGAGTCTAAAGTATCGACTTACGAGACTTAT
GTCTCCACACCAAGCGAGAGAACCGTTTTGCTTGTGAAAGCACGCGGCGA
AACATGGCGAGACAAAATCGGGCTTTACGAGCCAACAGAACCAAATTTCT
GGCGATACGTTTTTGCTGAATTCGTTTACACGTTAATATTTACAATTATT
GCGTGTGGATGTAGTCTTAACTTGGGACAACCAAGGTCTGATTTACACCA
AGCCGTTTGCGTTGGAGGGATTGTGGCTGTTTTGATTACAGTTTCAGCTG
AGAAATTGGGATATTTTAACCCAGCCTTGTCATTTGGGTTGTTGGTTGCC
GGTGAAATTAAATTCGTTCGATTTTTTGTTTACGCTGCTGTTCAAGTCGC
TGGCAGCTGTGCCGGAGCTGGTCTTCTCTATCTCTACACACCATCCAATG
TCCGTGGTCATCTGGGAACATTATCCATTCACGATGATCTGTTAGTTGGA
GTTGCATTCGTGGTCGAACTCACTTTAACTTTCATTGTCATGTTAGTTAT
CATTGCAGCAAGGGATCCGGACAACCAATTCTCTTTGTTACAATCTAACA
TGGTCGTTGGTCTATCTGTAGCTGTCGCAATGTTGATGGGAATGCCTTTC
ACTGGTGCTGGAGTCAATCCTATTCGTGCTTTTGGACCTGCAGCTGTTAC
TGGAAATCTTGTCCACGAACACTGGGTTTACTGGGTCGGTCCATTGGTAG
GAGCATTATGTGCGTCTTTGTCTTACAAATACATTTTCAAACTTGGTGAA
GAAAAACCCAAAGAAAAAGCACAACCTATGCCAACTGTTCATATGAAAAT
CAAAAGCACTTCAAACTCAAGTGTCTAAATGTCTGGAGAAGAAGGCGAGT
CTAAAGTATCGACTTACGAGACTTATGTCTCCACACCAAGCGAGAGAACC
GTTTTGCTTGTGAAAGCACGCGGCGAAACATGGCGAGACAAAATCGGGCT
TTACGAGCCAACAGAACCAAATTTCTGGCGATACGTTTTTGCTGAATTCG
TTTACACGTTAATATTTACAATTATTGCGTGTGGATGTAGTCTTAACTTG
GGACAACCAAGGTCTGATTTACACCAAGCCGTTTGCGTTGGAGGGATTGT
GGCTGTTTTGATTACAGTTTCAGCTGAGAAATTGGGATATTTTAACCCAG
CCTTGTCATTTGGGTTGTTGGTTGCCGGTGAAATTAAATTCGTTCGATTT
TTTGTTTACGCTGCTGTTCAAGTCGCTGGCAGCTGTGCCGGAGCTGGTCT
TCTCTATCTCTACACACCATCCAATGTCCGTGGTCATCTGGGAACATTAT
CCATTCACGATGATCTGTTAGTTGGAGTTGCATTCGTGGTCGAACTCACT
TTAACTTTCATTGTCATGTTAGTTATCATTGCAGCAAGGGATCCGGACAA
CCAATTCTCTTTGTTACAATCTAACATGGTCGTTGGTCTATCTGTAGCTG
TCGCAATGTTGATGGGAATGCCTTTCACTGGTGCTGGAGTCAATCCTATT
CGTGCTTTTGGACCTGCAGCTGTTACTGGAAATCTTGTCCACGAACACTG
GGTTTACTGGGTCGGTCCATTGGTAGGAGCATTATGTGCGTCTTTGTCTT
ACAAATACATTTTCAAACTTGGTGAAGAAAAACCCAAAGAAAAAGCACAA
CCTATGCCAACTGTTCATATGAAAATCAAAAGCACTTCAAACTCAAGTGT
CTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000087_pilon | genome | sc0000087_pilon:1162186..1166261 + |
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