MSTRG.11876.1.p1 (mRNA) -

Overview
NameMSTRG.11876.1.p1
Unique NameMSTRG.11876.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000087_pilon:1082386..1085144-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11876.1.p1 ID=MSTRG.11876.1.p1|Name=MSTRG.11876.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2759bp|location=Sequence derived from alignment at sc0000087_pilon:1082386..1085144- (Clytia hemisphaerica_ch_hm2_pilon)
CTATCCCCTTCAGAAGTTCTGGATGAGTTTCCTTGAAATGACAGAAATAC
TCTTAAACACGATCTATTCATTGAGAAGTGGTCATTTTGAGCTTCTTGTA
GAATGCATAAGGTTGATCATTCCTTTTGCTTTTGCATACGATCACATCAA
TTATGCCAGGTATCTAACAGCAATGCTTGCAGATCTTCTCAAATTACCGG
AAGAACTTCCAAATATTCACGAAGAATTTATGAATGGCAATTTCGTGGCT
CAACTAACGGATGGAACAAAGTTTTCTCGTGTGGAAACAGACAAGGTGAT
TGAGATGACACTCAACAAAGATACAAAAACTCCAGGTAACGATTGAAAGT
GATTTTTAATGATCTCTTAACATTACTATATAGCTGTTTATTTTGCCATC
TCCAGCGCTTGACTTTGCTCATGTTTCTATATATGCTACTGTAATTATAA
TTATATGGTTATCCTAAAATGATTTGTTCTCCTTCTCTATTATCGTTCAG
GTGGAACAACTGGATTCTCAACAAACGTCAACGCTGTGAAGAGATGGGAG
GTCAATGCTTCATACAGAGCTGCTCTCAGAACATGTTTTCACAAGCATCT
TAATTTCTCTAAAAAGAAGCACGCCCATCCTGATTTCGGACCAACAAGGA
TCACTAAAGATCAACAAGCAATTCACGAGATCTTGAACATTATGACACAT
CGCTTCATCGATCCGATCAGTGAACAACCCTTGTTATCTATCTCCACTGG
AATTCTGGCAAATGAGAAAGTGACAAATGACATGCTCTCTGCAAAGAATT
TGGGTCAAGCTGCGATGAAGAATTTCACTTCAAACCGACTCGGAAAAGAC
CGAGAGAAATGTTTTTATGATCCTTTAAAGTTGATGAAGCTTGGTACCTT
TGTAACCATGAACAAAACTAAAGAATGCAAAGTCAAATCAAAAGTCATTC
CACTCCAAGCCACAAAGGATCTTTTTGCAAAGATATCTCTCATCGCTCAG
ATTCGTTCTATCGACATGAGGTCAATATTTCAATTTCCACTCGGTCCTTT
ACCTTGGTCCCTTGCTGACCCTATTGGTTCGTTAAAGAAAACATCTAAAT
CATCATTGCTTCATAAACTGGAAGGCAAGGTTGACCCGATCGATAGTCTT
CAAGAACGTCATACTTTGATTATCGATGGTATGGCTTACGTTCAGCAGGC
AAAGGTCACTGACAAAACCTTCGGGGAATTTGCGATGGATCTACTCGAAC
GAGTCCTTCGCGTTGGATCAAGATCAAATCGGATCGATGTTGTCTTTGAT
GACTATCGTGATGCTTCAATCAAAAATGTCGAAAGAAGTAGACGATCATC
AGGAAATTTGCTCTTCCAGTCCATTCTACCAACAACAGCTATAAAGCAGT
GGGGGCTCTTTCTCTCGAGTGGAAGGAACAAAAACGCCCTTGTCAGATTT
ATATGCTCAGAGTGGAAGAAAGTGAATTGTCTTTCAAAAATAGCATCTAA
AAACCTCTTCGTGACAGATGGAGAATCGGTGTTCCATTTAACCGACCACT
CATGTTCATTAGTAGAAGAGCTCACCAGCAACCACGAAGAAGCAGACACC
CGTATGGTTTTGCACGCTAAGCATGCAAGTGAAACGTCTGAACAAGTTCT
CATCTCAAGTCCAGATACAGATGTATTTGTAATTTGTCTTGGGATGCAAC
ATATGATTAATGCCAATGTATTTTTCCTCACCGGAGTGAAGAATTCCAGA
AGAATTATTGACATCACAGCCGTTGCAGAAAATGTAAATACGTCATTGAA
CCAATGCGAAGCTTCCAAAGATTTGATCCTGGAGTCATTGATCGGCCTCC
ATAGCTTCACTGGTTGTGACACCATTAGTGCTTTCGCTGGGAAGGGGAAA
GTCAAACCATTGAATTTGATGATGAAGGATATACGCTACGTGGAAGCTTT
TTCTCAGCTGGGGAAGACTATCAATATAGATAACAAGATTAAAGATCAGT
TGAAGCAATTTGTTTGTCACTTATACGGTTGGAGACAAACCAAGTCACTG
CAAGACGTTAGATACAAGATGTATTGTCAGAGTGGAGGGAAATTGTCCTG
CGAAAAACTGCCACCGTGTGACGATGTCCTCGAGCTACACATCATCAGAG
CCAACTACCAAGCTTTCATTTGGCGACAAAGCTTGGTCACACAGCAGCAA
CAAGACGTTCCAACAGAAAATGGTTGGCTTTTGAATGAAGATGGGTCTTA
CGATATTGAGTGGATGAGATGCAACCCTGCACCCGATGAGGTAATTGTCA
TTACTATCTTTGATATGAAAAGGTATCTGAGAAAAGTTACATTTATATCA
TCTTAGAGTCTACTATTCTATCTTTCTATGTTGTTAACTCATCTGACACG
TTCCCACAAATTTTTATACCATTTTAGATCCTTGAGCTGGTATCTTGTGA
CTGTAAGAAGAAATGTGACGAAAACAGTTGTTCATGTGCAGTCAATAACT
TGAAGTGTACAGATATTTGCTCTTGTAATGATTGTGGCAATATTGAAGCG
ATAGAAGTTGATGAGGAAATGATGGATGAATACGATGATTATTATGATTC
AGAAGATGATGAAAATTAAAATTTGAAGCTGCTTGAATTGATTAACTAAA
TTAAATAACTTTTTTCTTTACTTCATACTATATTTTTGTTTACATTTCTT
AAAAGTCATTCGTACACGAGGAGTGCATTCGATCCGAAACATCAATTCAT
GTAAAAAAT

Coding sequence (CDS) from alignment at sc0000087_pilon:1082386..1085144-

>MSTRG.11876.1.p1 ID=MSTRG.11876.1.p1|Name=MSTRG.11876.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6948bp|location=Sequence derived from alignment at sc0000087_pilon:1082386..1085144- (Clytia hemisphaerica_ch_hm2_pilon)
ATCCTTGAGCTGGTATCTTGTGACTGTAAGAAGAAATGTGACGAAAACAG
TTGTTCATGTGCAGTCAATAACTTGAAGTGTACAGATATTTGCTCTTGTA
ATGATTGTGGCAATATTGAAGCGATAGAAGTTGATGAGGAAATGATGGAT
GAATACGATGATTATTATGATTCAGAAGATGATGAAAATTAAGTGGAACA
ACTGGATTCTCAACAAACGTCAACGCTGTGAAGAGATGGGAGGTCAATGC
TTCATACAGAGCTGCTCTCAGAACATGTTTTCACAAGCATCTTAATTTCT
CTAAAAAGAAGCACGCCCATCCTGATTTCGGACCAACAAGGATCACTAAA
GATCAACAAGCAATTCACGAGATCTTGAACATTATGACACATCGCTTCAT
CGATCCGATCAGTGAACAACCCTTGTTATCTATCTCCACTGGAATTCTGG
CAAATGAGAAAGTGACAAATGACATGCTCTCTGCAAAGAATTTGGGTCAA
GCTGCGATGAAGAATTTCACTTCAAACCGACTCGGAAAAGACCGAGAGAA
ATGTTTTTATGATCCTTTAAAGTTGATGAAGCTTGGTACCTTTGTAACCA
TGAACAAAACTAAAGAATGCAAAGTCAAATCAAAAGTCATTCCACTCCAA
GCCACAAAGGATCTTTTTGCAAAGATATCTCTCATCGCTCAGATTCGTTC
TATCGACATGAGGTCAATATTTCAATTTCCACTCGGTCCTTTACCTTGGT
CCCTTGCTGACCCTATTGGTTCGTTAAAGAAAACATCTAAATCATCATTG
CTTCATAAACTGGAAGGCAAGGTTGACCCGATCGATAGTCTTCAAGAACG
TCATACTTTGATTATCGATGGTATGGCTTACGTTCAGCAGGCAAAGGTCA
CTGACAAAACCTTCGGGGAATTTGCGATGGATCTACTCGAACGAGTCCTT
CGCGTTGGATCAAGATCAAATCGGATCGATGTTGTCTTTGATGACTATCG
TGATGCTTCAATCAAAAATGTCGAAAGAAGTAGACGATCATCAGGAAATT
TGCTCTTCCAGTCCATTCTACCAACAACAGCTATAAAGCAGTGGGGGCTC
TTTCTCTCGAGTGGAAGGAACAAAAACGCCCTTGTCAGATTTATATGCTC
AGAGTGGAAGAAAGTGAATTGTCTTTCAAAAATAGCATCTAAAAACCTCT
TCGTGACAGATGGAGAATCGGTGTTCCATTTAACCGACCACTCATGTTCA
TTAGTAGAAGAGCTCACCAGCAACCACGAAGAAGCAGACACCCGTATGGT
TTTGCACGCTAAGCATGCAAGTGAAACGTCTGAACAAGTTCTCATCTCAA
GTCCAGATACAGATGTATTTGTAATTTGTCTTGGGATGCAACATATGATT
AATGCCAATGTATTTTTCCTCACCGGAGTGAAGAATTCCAGAAGAATTAT
TGACATCACAGCCGTTGCAGAAAATGTAAATACGTCATTGAACCAATGCG
AAGCTTCCAAAGATTTGATCCTGGAGTCATTGATCGGCCTCCATAGCTTC
ACTGGTTGTGACACCATTAGTGCTTTCGCTGGGAAGGGGAAAGTCAAACC
ATTGAATTTGATGATGAAGGATATACGCTACGTGGAAGCTTTTTCTCAGC
TGGGGAAGACTATCAATATAGATAACAAGATTAAAGATCAGTTGAAGCAA
TTTGTTTGTCACTTATACGGTTGGAGACAAACCAAGTCACTGCAAGACGT
TAGATACAAGATGTATTGTCAGAGTGGAGGGAAATTGTCCTGCGAAAAAC
TGCCACCGTGTGACGATGTCCTCGAGCTACACATCATCAGAGCCAACTAC
CAAGCTTTCATTTGGCGACAAAGCTTGGTCACACAGCAGCAACAAGACGT
TCCAACAGAAAATGGTTGGCTTTTGAATGAAGATGGGTCTTACGATATTG
AGTGGATGAGATGCAACCCTGCACCCGATGAGTATCCCCTTCAGAAGTTC
TGGATGAGTTTCCTTGAAATGACAGAAATACTCTTAAACACGATCTATTC
ATTGAGAAGTGGTCATTTTGAGCTTCTTGTAGAATGCATAAGGTTGATCA
TTCCTTTTGCTTTTGCATACGATCACATCAATTATGCCAGGTATCTAACA
GCAATGCTTGCAGATCTTCTCAAATTACCGGAAGAACTTCCAAATATTCA
CGAAGAATTTATGAATGGCAATTTCGTGGCTCAACTAACGGATGGAACAA
AGTTTTCTCGTGTGGAAACAGACAAGGTGATTGAGATGACACTCAACAAA
GATACAAAAACTCCAGATCCTTGAGCTGGTATCTTGTGACTGTAAGAAGA
AATGTGACGAAAACAGTTGTTCATGTGCAGTCAATAACTTGAAGTGTACA
GATATTTGCTCTTGTAATGATTGTGGCAATATTGAAGCGATAGAAGTTGA
TGAGGAAATGATGGATGAATACGATGATTATTATGATTCAGAAGATGATG
AAAATTAAGTGGAACAACTGGATTCTCAACAAACGTCAACGCTGTGAAGA
GATGGGAGGTCAATGCTTCATACAGAGCTGCTCTCAGAACATGTTTTCAC
AAGCATCTTAATTTCTCTAAAAAGAAGCACGCCCATCCTGATTTCGGACC
AACAAGGATCACTAAAGATCAACAAGCAATTCACGAGATCTTGAACATTA
TGACACATCGCTTCATCGATCCGATCAGTGAACAACCCTTGTTATCTATC
TCCACTGGAATTCTGGCAAATGAGAAAGTGACAAATGACATGCTCTCTGC
AAAGAATTTGGGTCAAGCTGCGATGAAGAATTTCACTTCAAACCGACTCG
GAAAAGACCGAGAGAAATGTTTTTATGATCCTTTAAAGTTGATGAAGCTT
GGTACCTTTGTAACCATGAACAAAACTAAAGAATGCAAAGTCAAATCAAA
AGTCATTCCACTCCAAGCCACAAAGGATCTTTTTGCAAAGATATCTCTCA
TCGCTCAGATTCGTTCTATCGACATGAGGTCAATATTTCAATTTCCACTC
GGTCCTTTACCTTGGTCCCTTGCTGACCCTATTGGTTCGTTAAAGAAAAC
ATCTAAATCATCATTGCTTCATAAACTGGAAGGCAAGGTTGACCCGATCG
ATAGTCTTCAAGAACGTCATACTTTGATTATCGATGGTATGGCTTACGTT
CAGCAGGCAAAGGTCACTGACAAAACCTTCGGGGAATTTGCGATGGATCT
ACTCGAACGAGTCCTTCGCGTTGGATCAAGATCAAATCGGATCGATGTTG
TCTTTGATGACTATCGTGATGCTTCAATCAAAAATGTCGAAAGAAGTAGA
CGATCATCAGGAAATTTGCTCTTCCAGTCCATTCTACCAACAACAGCTAT
AAAGCAGTGGGGGCTCTTTCTCTCGAGTGGAAGGAACAAAAACGCCCTTG
TCAGATTTATATGCTCAGAGTGGAAGAAAGTGAATTGTCTTTCAAAAATA
GCATCTAAAAACCTCTTCGTGACAGATGGAGAATCGGTGTTCCATTTAAC
CGACCACTCATGTTCATTAGTAGAAGAGCTCACCAGCAACCACGAAGAAG
CAGACACCCGTATGGTTTTGCACGCTAAGCATGCAAGTGAAACGTCTGAA
CAAGTTCTCATCTCAAGTCCAGATACAGATGTATTTGTAATTTGTCTTGG
GATGCAACATATGATTAATGCCAATGTATTTTTCCTCACCGGAGTGAAGA
ATTCCAGAAGAATTATTGACATCACAGCCGTTGCAGAAAATGTAAATACG
TCATTGAACCAATGCGAAGCTTCCAAAGATTTGATCCTGGAGTCATTGAT
CGGCCTCCATAGCTTCACTGGTTGTGACACCATTAGTGCTTTCGCTGGGA
AGGGGAAAGTCAAACCATTGAATTTGATGATGAAGGATATACGCTACGTG
GAAGCTTTTTCTCAGCTGGGGAAGACTATCAATATAGATAACAAGATTAA
AGATCAGTTGAAGCAATTTGTTTGTCACTTATACGGTTGGAGACAAACCA
AGTCACTGCAAGACGTTAGATACAAGATGTATTGTCAGAGTGGAGGGAAA
TTGTCCTGCGAAAAACTGCCACCGTGTGACGATGTCCTCGAGCTACACAT
CATCAGAGCCAACTACCAAGCTTTCATTTGGCGACAAAGCTTGGTCACAC
AGCAGCAACAAGACGTTCCAACAGAAAATGGTTGGCTTTTGAATGAAGAT
GGGTCTTACGATATTGAGTGGATGAGATGCAACCCTGCACCCGATGAGTA
TCCCCTTCAGAAGTTCTGGATGAGTTTCCTTGAAATGACAGAAATACTCT
TAAACACGATCTATTCATTGAGAAGTGGTCATTTTGAGCTTCTTGTAGAA
TGCATAAGGTTGATCATTCCTTTTGCTTTTGCATACGATCACATCAATTA
TGCCAGGTATCTAACAGCAATGCTTGCAGATCTTCTCAAATTACCGGAAG
AACTTCCAAATATTCACGAAGAATTTATGAATGGCAATTTCGTGGCTCAA
CTAACGGATGGAACAAAGTTTTCTCGTGTGGAAACAGACAAGGTGATTGA
GATGACACTCAACAAAGATACAAAAACTCCAGATCCTTGAGCTGGTATCT
TGTGACTGTAAGAAGAAATGTGACGAAAACAGTTGTTCATGTGCAGTCAA
TAACTTGAAGTGTACAGATATTTGCTCTTGTAATGATTGTGGCAATATTG
AAGCGATAGAAGTTGATGAGGAAATGATGGATGAATACGATGATTATTAT
GATTCAGAAGATGATGAAAATTAAGTGGAACAACTGGATTCTCAACAAAC
GTCAACGCTGTGAAGAGATGGGAGGTCAATGCTTCATACAGAGCTGCTCT
CAGAACATGTTTTCACAAGCATCTTAATTTCTCTAAAAAGAAGCACGCCC
ATCCTGATTTCGGACCAACAAGGATCACTAAAGATCAACAAGCAATTCAC
GAGATCTTGAACATTATGACACATCGCTTCATCGATCCGATCAGTGAACA
ACCCTTGTTATCTATCTCCACTGGAATTCTGGCAAATGAGAAAGTGACAA
ATGACATGCTCTCTGCAAAGAATTTGGGTCAAGCTGCGATGAAGAATTTC
ACTTCAAACCGACTCGGAAAAGACCGAGAGAAATGTTTTTATGATCCTTT
AAAGTTGATGAAGCTTGGTACCTTTGTAACCATGAACAAAACTAAAGAAT
GCAAAGTCAAATCAAAAGTCATTCCACTCCAAGCCACAAAGGATCTTTTT
GCAAAGATATCTCTCATCGCTCAGATTCGTTCTATCGACATGAGGTCAAT
ATTTCAATTTCCACTCGGTCCTTTACCTTGGTCCCTTGCTGACCCTATTG
GTTCGTTAAAGAAAACATCTAAATCATCATTGCTTCATAAACTGGAAGGC
AAGGTTGACCCGATCGATAGTCTTCAAGAACGTCATACTTTGATTATCGA
TGGTATGGCTTACGTTCAGCAGGCAAAGGTCACTGACAAAACCTTCGGGG
AATTTGCGATGGATCTACTCGAACGAGTCCTTCGCGTTGGATCAAGATCA
AATCGGATCGATGTTGTCTTTGATGACTATCGTGATGCTTCAATCAAAAA
TGTCGAAAGAAGTAGACGATCATCAGGAAATTTGCTCTTCCAGTCCATTC
TACCAACAACAGCTATAAAGCAGTGGGGGCTCTTTCTCTCGAGTGGAAGG
AACAAAAACGCCCTTGTCAGATTTATATGCTCAGAGTGGAAGAAAGTGAA
TTGTCTTTCAAAAATAGCATCTAAAAACCTCTTCGTGACAGATGGAGAAT
CGGTGTTCCATTTAACCGACCACTCATGTTCATTAGTAGAAGAGCTCACC
AGCAACCACGAAGAAGCAGACACCCGTATGGTTTTGCACGCTAAGCATGC
AAGTGAAACGTCTGAACAAGTTCTCATCTCAAGTCCAGATACAGATGTAT
TTGTAATTTGTCTTGGGATGCAACATATGATTAATGCCAATGTATTTTTC
CTCACCGGAGTGAAGAATTCCAGAAGAATTATTGACATCACAGCCGTTGC
AGAAAATGTAAATACGTCATTGAACCAATGCGAAGCTTCCAAAGATTTGA
TCCTGGAGTCATTGATCGGCCTCCATAGCTTCACTGGTTGTGACACCATT
AGTGCTTTCGCTGGGAAGGGGAAAGTCAAACCATTGAATTTGATGATGAA
GGATATACGCTACGTGGAAGCTTTTTCTCAGCTGGGGAAGACTATCAATA
TAGATAACAAGATTAAAGATCAGTTGAAGCAATTTGTTTGTCACTTATAC
GGTTGGAGACAAACCAAGTCACTGCAAGACGTTAGATACAAGATGTATTG
TCAGAGTGGAGGGAAATTGTCCTGCGAAAAACTGCCACCGTGTGACGATG
TCCTCGAGCTACACATCATCAGAGCCAACTACCAAGCTTTCATTTGGCGA
CAAAGCTTGGTCACACAGCAGCAACAAGACGTTCCAACAGAAAATGGTTG
GCTTTTGAATGAAGATGGGTCTTACGATATTGAGTGGATGAGATGCAACC
CTGCACCCGATGAGTATCCCCTTCAGAAGTTCTGGATGAGTTTCCTTGAA
ATGACAGAAATACTCTTAAACACGATCTATTCATTGAGAAGTGGTCATTT
TGAGCTTCTTGTAGAATGCATAAGGTTGATCATTCCTTTTGCTTTTGCAT
ACGATCACATCAATTATGCCAGGTATCTAACAGCAATGCTTGCAGATCTT
CTCAAATTACCGGAAGAACTTCCAAATATTCACGAAGAATTTATGAATGG
CAATTTCGTGGCTCAACTAACGGATGGAACAAAGTTTTCTCGTGTGGAAA
CAGACAAGGTGATTGAGATGACACTCAACAAAGATACAAAAACTCCAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11876MSTRG.11876Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11876.1.p1.exon3MSTRG.11876.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11876.1.p1.exon2MSTRG.11876.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11876.1.p1.exon1MSTRG.11876.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11876.1.p1MSTRG.11876.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087_pilongenomesc0000087_pilon:1082386..1085144 -