MSTRG.11872.1.p3 (mRNA) -

Overview
NameMSTRG.11872.1.p3
Unique NameMSTRG.11872.1.p3
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000087_pilon:1030041..1040492+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11872.1.p3 ID=MSTRG.11872.1.p3|Name=MSTRG.11872.1.p3|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=10452bp|location=Sequence derived from alignment at sc0000087_pilon:1030041..1040492+ (Clytia hemisphaerica_ch_hm2_pilon)
GGCAGTTCGTTTTGCAAATTGTATGTTTCTTGTATTTTATTAATGGTGGA AATGTAACTTAGCCAACCCTGAAAGACATGATAtgattattcatgatatg caccactgcaacgactttacgaaattatgcaacttttctctttttgttcc acccaatacgtcactttttctattgtttacgtgacatattgggtggaaaa tttgaaaagttctcagaagactctcctccagtggtgcatatcatgaatta tatacttttgataaaaacaaacttgtGAGCAATAAACAGACTTACCATCT TTCTCGGAGCAAAAACAGAGCCTTCATCGCGTTTCTAGCATTATtatctt taaaatatattgaaattgaaaaaagcaaGATCTGTACGACAactcataaa aaatcattttgtacataaaaaatcttcattcaGCAGCAGGGGGTGTGTTT TTGAACACCAGTGAGTCCGATGAggagtcttctttttcaaaataaatctc aAGCAGCTTTTTACTCTATAATAATCCATACCATTGTGAACAAAAGATCT TTTACGAGACAAATCAAGCTTGTCAACTGAATCTTTAATTTTGCCAATAG TCTCATACCGATGCCTGATTTTCAGCTCTTTCgtttcttgattttcaaaa tgaacaaaaactctttgaatgtaatttaactttGTGCTTGGAACAAAAGG CATTAACAATGGCAATATCATCATCACCAACCAAACAACTGGCCATGTta agaaaaacaaagatatCAATATTTTTCGTTGTAGCATTTTGTTTCCTCAT CAAAAAACAAGGATGCCAATGATTTTTTCCAATAAAACAGACTTTGATCC TTCAAATAATCGTTCTTGAAAAACAGAACAGGAGGGAAAACACCAAAATG AGCACGTAACTTCATGCTCAACTCATCAAGAGTTGGGATATCAGAAACAG AATACTCTTCAACAAGGGTGTTTTTGTTGTGGTAATACACTGTGATGGTT TTTAAAGCTTTGATACCCTTGCTCAAATATAATTCATTCGTCAGATTCTC CGACAGTCCCTTCACTGCTATATATATGCCAACCTTTTTACGCATAATCA CTTTATTATACTTGTTATATTCTTGATCTGTGAAATCTTCAAAGATGTTA GCAATCtttttttCCATACTACTAAGTTCTTTACCATCAGCTGTGAGAAC AAAATGAGGTGCAGGAAATCCAACTTCTTTGGTGATAAACGAAAACAAAT CTTCAACTGTTGAATTCAATCCAAAACTGTAATCAAATAGTGTACCATTC CCACTGATAACAGGAAGAGtatcaaaaacgaaaatgttattttctgtGCA GATTTTTTGAACCAGGGTATCTTCTGttggaaagatgaaaaaattgattt caaaaaacCCATCAATCAAACTATCACAATAGGATGAAAACTTGTACACC AAATGACATTCTTCCCACAAGAAGTCATCCAAATAAAAGACTTGTAATTC AATAGGAATTCCCAATTTTTCATTCACCTTTCTCTTCAACGCAAGTGTAT CAATAATATCATGACCATCAAATTCAAGTAGTAGGGTATCATCAGATAAG TTTTTAAGGCGTATTCCAGGAATAGTCAGTGTGTCCGCCATTGCCCAATC ATTATCTTTGTTGTCTTTAAACATTACCTGAACACTTGCACCCACATAAA ACTCCCCACCCTTGAAAAAGAGATCAATTAGGAATGAATCGTCTTCTATA GGTTTCAAAGGTAATTCCTCAGTTTCGTCAAAATCTTGATGGTAAAGGAA AAACGACTCCTTGTTTATTCCATACAATTCATCAAGTTTGTTCTTGATGT CAGAAACTTTACTTCCAAGAGAAACTTGGACACTATCAAGGATAGATGGA TGTGAGGTGAAGACATGGATATCAACCTCCTCAATCTCACTATTGATACC AAATTCCTTACAAATAGCATGTATTTCCAGATCATCAGAAcctttaacaa aaaatttcagAGATATATCATCTTTTCCCTGTTGCAGCAATTCTGCAAAT CCACTATCTGATAAAACCagatcgtcgcatcaaaataagaaagccttaag tccatttttgtagttttgagaaaatcaagtttaaaggtttgaaatggctg ccatttttgaccatgttgggctagctagctgcttttttgatatgaatata aatgaagaaagatctttcaagttctaaagtatcaacattgtcacttatac cattgcggagatatgaatgcttcttcatagcatgtttttcgagaatggac ttaaaccttttttttctatgtaaatttccttgattaaaactgaaaatttg aaaaatttccagtgaaaaagtgtcttaactccaaaatggacttaagactt tcttgctttaaactttcttaacttttttgaactctttaactaaaacctta atctaaaaggtcctaaagtccaactaaaatgacaatggacttaagacttt cttaacttgagaaaatttcaaaaataaaaattcttatttttcAaaaaact taaaaataggccactttaggttggtttttgatggatttaagccaaaaatt tgataaaaaatggggtgtaaagcatcggtatggtcataactcaatttttg aaaaaatggacttaaggctttcttattttgatgcgacgagaTGATCTTTG TTAACAAGTATTTGTAAATGTTCTGGTATGCCAATCTCATCTTTGATTTG TTCCTTCAGATCTTTCAATGTTGAGATATCTTTTTTGGATAGAGCAATAG ACTTTTGTTGACAAAATACTATAGTGATCGTCATCTTTTATGTATATTAG ATTAATTTGATAATTTGCCTGAAATAAATGCAATGTGAAATTATATAtta attataacaatttttcaaaaaggataGACTTCTTGCAACTTGAAATATTC GTTGAAAATGGTAGGTACAGCAAGAATCAGTGCTAACTAAAAGTGAATGT GGATTGTTTCAATAATAACGATTTGTACCTTCTAGTCATTTCAGGGAAAA TCGCATTTTCTCACATCaccgtgttttttttttgtttttttttatataaa tcctatagaaaattatgaagataatataaaaaaaaagataaaattaagaa aaaataattttttttgctaagactatttttatagacaatatttttcgaaa tattttttccatgaacttttCCATGAAATATAATGAAGTTTAATAATAGT TTAATAAAGGTTTAATAAGGATCAACGATAGACCCTTGAAAAGCTAATTA TAATCTCTGCATCCCTTACTTGGATTTTGCCTGGAAAAACTTATTACTTA TTAATACATTATATTGATTATATTATCACCATGTCACAGTAGCAATGGTC TAAAGACACAcgaaaacatgttaagaatttagacttttatatttttgaaa tacaaaaaaaactaaagataaTAAGTTAAAGGTATTACAATCTAAATTTA AATATAAATAGAAATATATAATGGATaatttaaccctttgagtgccaggg tccttttttctaagttttttttaaaaaatcgctagttcaaactttaaggg cttatatctcctgatctagaaggaattagaagctcgtatatagctcgttg gatagcttagagtctcttctttctgctgcgcggacctgactgaactgatg aaaaggtgcccagtggtaaaatttcaaatcaattcactagaagacagaat aaagtaaaacagggccaaatttggaggttcttggatcactcgttgaccaa aaatagtcaaaaaacggtcagaatctcaaaaaagtgaatttttgtcaatt tttttgcatttttttgacttttttgcttaaaatttcgctggaaagactca cttttgaatttttttttgcttgaccataaaggacaatctaattcctacga gttcgaccaaaaataacgatttctaactcaaactgggcattacaggaggg cttcgccctcctatatagcccatgtcgtatatatacgacatcggcactta aagggttaaagaaataTGTTATgaaaataattgtaaaagtaactaaaaag ccatttgaatgaaaaatttatcgaaaaataatttaagaCAGCTATTATGT AAAAGATGCATTAAATATAAGGGAGAAGTCGATAAATACCATGAATAtga atgaattattgataattgacattgataattgaaaaaattgcattttataa aattataaaattgcaAGATTTTAATGAATAATCAAATTAATActtaatct atatattaatagcggtgctttgtgtgtctgtgtgtcaccactttcgtttt cgctttgtttgtgttttaaaattatgacttttagtctcttgctccacaat tttgttctattggattcgcgccatttgcaaaagatcggatagagcttggt ttagactttattcagcctttgttttgaaatttaaggcccatctacatttt agtaattttaatttctgcccagagttgcctttttctctcttcttttgttt taaatgttttcgaatgtatttaacgatcgtatttattaatgacattcgaa ttcttttcaaaacaaaacaatttcatttgtggacaacaacagcattcaaa ggacCATATAAAGCATGAGAAAAAATGAGTTCACTTCTTTCTCCTTATAT GTtgtcttataaaaatattcaagtcgtcgttatgttaaaaagtgtgtacg tcattttttatgtttaaattcgaaaagttatgccaagggtttaaaaaagc aacttagaattgtcttattttttttcgatctgataaaaaacaaagagtta cactattctttgtgaccttcccactttttcctgaaaaattgtcatttaaa ctggacggtatatttaacgcgagcgaagcaaaaaaattaactGCCTGCAG AGTCGTTttaaacgatgctctttctgataacttttgacttaaacaaaaca ATATGTCACGGGGGGACAgtacacgatccaaatatggttaaaagataaga cacccgggaaggttagagttaaaagttgtagagatttctttttttttttt ttgatcgcttttttGAGCCAGCTTccacatccaaaggacttttagtgcgt tcagctacagcttaaccggcgtgcgacgccgggtaccggctagttataAT TAATACTTTGAccctcaatttttttaatttcgatgCTCTGTATTCTTCTT ATAAATTTTGCTTATTAACGTTTTGACGTTTTAAGTAGAAAGTTCCAAGG CTTGGTAAAGTTATGTATCTGAGCGAAAAATCTCCAATTACGAAAGAAAT CATTCGAATTTTGTAGTAAGACAGTACGTCTTGCAAGTTGAATGTTTCTT TTATCATATTAATGGTGGAAATGTAACTCAGCCCATCCTGAAAGCCCTAT ATTATatacttttgaaaataacaagCGTAGTGTGAGCAATAAACAGACTT TCCATCATTTTGCGAACAAAAACAGAGTGCATTTATCGTGTTTCTAGCAT TATtatctttaaaatatatttaattgaaaaaagcaaaatttgtaCGATCA AGAAatcattttgtaaataaaaattttcatttagcAGCAGGATGTGTGTA TTTGAACACCAGTGAGTCTGATGAagaatcttctttttcaaaataaatct caAGCAACCTTTTTCCTCTATAATAATTCGTACCATTGTGAACGAAAGAT CCTTTAAGAGACAAATCAAGTTTGTCAACTAAATCGTTAATTTTTCCAAT CCCAAATCCAACCCTAAGTTTCAGCTCTTTCGTTgcttgattttcaaaat gaacCACAACTCTTTGAAGGTAATTAACTTTGTGCTTGGAACAAAAAGCA TTAACAATTGCAATATCATTATCACCAACCAAACAACTGGCCATGTCAAG AccaacaaaaatatcaatattttcattgtaGCATTTTGTTTCTTCATCaa aaaaaaaGGATGCCAATGACTTTTTCCAACAAAACATATCATCCTTCATA TAACCGTTCTTGAAAAACAGAACAGGAGGGAAAACACCAAAATGAGCACG TAACTTCTTGCTCAACTCATCAAGAGTTGGGATATCAGAAACGGAATACT TCTCAACAAGGGTGCTTTTGTTGTGGTAATACACTGTGATGGTTTTTAAA GCTTTGATACCCTTGCTCAAATATAATTCATTCATCAAATTCTCCGACAG TTCCTTCACTGCTATATATATGCCAACTTTTTTACGCATAATCACTTTAT TATACTTGCTATATTCTCGATTTGTGAAATCTTCAAAGATGTTAGCAATC tttttttCCATTCTACTAAGTTCCTGACCATCAGCTGTGAGAACAAAATG AGGTGCAGGAATTCCAACTTCTTTGTTGATAAACGAAAACAAATCTTCAA CAGTTGAATTCAATCCGAAACTGTAATCAGATAGCGTACCATTCCCACTG ATAACAGGCAGAggatcaaaaacgaaaatgttattttctgtGCAGATTTT TTGAACCAGGGTATCTTCTGTTGGAAAGatgaaaaagttgatttcaaAAA ACCCATCAATCAAACTATCACAATAGGATGTGAACTTGTACATCAAATGA CATTCTTCCCACAAGAAATCATCCAAATAAAAGACTTGTAATTCAATAGG AATTCCCAATTTTTCATTCACCTTTCTCTTCAACGCAAGTGTATCGATAA TATCATGACCATCAAATTCAAGTACTACTGTATCATCAGATAAGTTTTTA AGGCGTATTCCATAAATAGTCAGTGTGTCCTGCATACTTGCCCAATCATC ATCTTCGTTGTCTTTAAACATTACCTGAACACTTGCACCCGCATAAAATT CCCCATCCTTGAAAAAGAGATCAACCAAGAATGAATCGTCTTCTATAGGT TTCAAAGGTAATTCCTCAGTTTCGTCAAAATCTTGATGGTAAAGGAAAAA CGACTCCTTGTTTATTCCATACTCTTCATCAAGTTGGTTCTTGATATCAG ATACTTTACTTCCAAGAGAAACTTGAACACTATCAAGGATAGATTGTCGT GAGGTGAAGACATGAATATTAACCTCCTCGATCTCACTATTGATACCAAA TTCCTTACAAATAGCATGTATTTCCAGATCATCAGAAcctttaacaaaaa atttcagAGATATATCATCTTTTCCCTGTTGCAGCAATTCTGCAAATCCA CTATCTGATAAAACCAGATGATCTTTGTTAACAAGTATTTGTAAATGTTC AGGTATGCCAAtctcatttttgatttgttcCTTCAGATCTTTCAATGTTG ATACATCTTTTTTGGATAGAGCGATAGATTTTTGTTGACAAAATACTATA GTGATCGTCATCTTCTATGTATAATtagattattttgataatttgccTGA AATAAATGCAATGTGAATTTAAGTTCACATCAGGtttttttAATTAGAGG AGGGGAGTGACATGTGCCAACTCACAaactgattttctgatttttggtaa aaagtatttttatattccatatttggaaaatatttccgattttctgattc ctgaaaatcataaaaacgaAGCTAAGATCAAAGGTGAACAATGCTTTAAA GGTAATTAATAACAAATCCTTTACCAGGAAACTTCTTATATGattccaaa aagtcaaaaaagaaacagctagatcataaagttaaaaaaaacgaacaaaa tcATTGACAATTAGCACTTTATCCTGGTCAACTATGATGTAATGctgtat tacttcaaataaatgCCTGCTTCTTTTTAATAcccccccccTCAAACAAG CACCCTATTTGAAAAAATACCTTACCTCTAAGAGGGGGTTTATTTGAAAG AAGTAGCTGCAAGGTAGAGTTATATGGAGaaaaaaaTACGGCATGTGTAA TTTCCTGTACCTAAAATCCACATCTCcttcaaaaattctttaaaaaagga GCGTTAACAAATAAATACAACATTGTTTAGCAGCTTTATTAGTTGGAACA ATATGTATTGTAATAGTATTGACAAGTACAGTAATATCAATAACGTTTGT CCACTACAAAGCTCACTTCCTTATAATTTAGTCTTCCTCTTTAGAGATGC AAACATGTCATCAAACTGCTTCAGCATCTCAATCAACCATTaaagaaact tttcatttttcaaaaaatgtgtcatCTGATGCATGGCTGTTCTCAGGGAG GGCCTACATTTGgaagggggggggctaaaaccACAGTCGGAGCCATGCAT CTCACATATTTTGGgaacatgttttttaataagaacatccacaatttttA AATCagatgtttttaaaactttatccaccatgaaaaaagttttcatcttt tcaaaattgtgTCTCCCTCACATATTTAACTAAgcgttctttttataaga acatctaaattttttgaagctttcaggGGATTTTAACTTCTTGAGCTTTA GCCTAAGAatgttatgaaaattttttcattttcaccattttgtaagtatt tttgtgtcatttcctaagaaaatggatttttAGAAAGTAGAATTTCCCAC AAAATGAACCATTTTTACAAAGTTCATTTATTTAAGATGGCCCAACTCCT CTTAAAATCACACAACAATACAATTTGGCTAACATCATTTTTTCAAGTCT GACATAGCATGACATAGCAACAAGCTGACTGTAATGTTTGATGAAGTCTG AAAGTCACTGTTGTGTTTATATTTTATGTCAGTCAACGACAACCAGATGA TGTTTATCTTAGACCCGTACGCGAACCTTATTGTATTTAGAATTTATCCA AGGTTCTAGAAGAGATATTCAAGATGCATCACGAACGCATGTGTGTCTTC TTCATTTCTGAACACAGCATTTTAGCGCTGCTAGAGCAGGATTTTGCTGC TAATTTTTCATTATATTGTCATACGATCCAGATTGGATGTTATTACTTCT TCGAGATGGCAAAAGCAATTGATATTTCTGCTCCAAAAGGATTCAACACA CATGGGGACCCTACAAGTTTGGGTGGAAGCTGGAAAAAATTGGAagcaaa gtttgaagtttaccTGATTGCTGCTGGTATAAACGATGATAACCAAAAGA AAGCTTTATTACCTGTTATTACTTCATTGTGCTGGTGAAGCCATGATAGA ACTCCACAATAATTTACCAGAGGCTGAGAATTTACCTAACAACCCAACAG AATATGTAAAAACTGTTAGCAAATTGGATAACCATTTTATACCAAGACAA AACAAACGATATGAGCGTCACATATAACGACTCCACCAACTTGCTACGAC ATATGAGTTTCATGATTTGCAGGATGGAATTGTCAAGCAAGTCATTGAAC GGTGCAactcaaagaaattgaaaaaacgaTTACTAAAGGAACGTGATTTA ACCATTGATAAACTGTTAGAATTTGCCCTAGTTATAGAAACATCAATCCG TAAAATATGAAAGTACCAATCCTCGTCAACAGAATCCCATTGAGGCTGAT TGAGGCAGAATCTGATGAAGATAACGACAACGTCAACAGAATATCCTATC ATCGACCACCACGATATCCAGTAGAATATCGAGAATACCACCCACCAAAA AGCTAACCTGTTATCGATGTGGAAATGATCATCTGGCCTCTGAATGCAAA ATCGATAAGGACGAAACCTGTTTCAATTGTGGGAAGAAAGGACACTTTGA AAACAGTGTGCCAATCTAAACCAAATTCAAGCCGCTCAGATAATCCACCA TCCGTTACATTACAGTCAATGACTCATCCTCTGATGACGAGTTCGTGTTG GCAATCAACAGCTCAACCAATTCAACAAAACAACGCAATCGAATTTTTCC GATCCAAATGAATCAAATGATAGTGTTGAAATGTTGATTGATAGTGGAAG TGACTTATAAACATTATCAGTCAAGGTACACTCACAGAAATGGGGTTTGA CCCTAAACGTTTCCCATATAAGGGCCAAGCCAAGTCGTTCAAACCTCCAT TATCGCTGAAAGAATGTTTTTATGCCAAGATTCGGGCTGGGAACTCTGAA ACAAATGTCCGGTTCATCATCAATCCGCACCAATCAGTTACAATCCTTGG ATATGACTCGTCAGTTGCACTGAATCTTCTTAGTATTGGACCTGATCCTG CAAGTTAAGTTAAGACTTGTTGGCCGGGGTTGGGTTGTGATGTGAAAGAA TTCATTAATTCATGCCATGGTTGTCAAGTCGTTGGCCCGTTGCCCAAACC AACTCTGGTAATTACAACAAAAATTCCGGATGAGTCGTGGTTATTGCTCG GTTGTGACCTTGTTACAGGGTGGCCACTCaaaaaaaCAAGTCAAATTCCA GGACTTTTCAAGGACTTTTCCAggatgtttttaaacttttccagGACTTT TT

Coding sequence (CDS) from alignment at sc0000087_pilon:1030041..1040492+

>MSTRG.11872.1.p3 ID=MSTRG.11872.1.p3|Name=MSTRG.11872.1.p3|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=315bp|location=Sequence derived from alignment at sc0000087_pilon:1030041..1040492+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCATCACGAACGCATGTGTGTCTTCTTCATTTCTGAACACAGCATTTT
AGCGCTGCTAGAGCAGGATTTTGCTGCTAATTTTTCATTATATTGTCATA
CGATCCAGATTGGATGTTATTACTTCTTCGAGATGGCAAAAGCAATTGAT
ATTTCTGCTCCAAAAGGATTCAACACACATGGGGACCCTACAAGTTTGGG
TGGAAGCTGGAAAAAATTGGAagcaaagtttgaagtttaccTGATTGCTG
CTGGTATAAACGATGATAACCAAAAGAAAGCTTTATTACCTGTTATTACT
TCATTGTGCTGGTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11872MSTRG.11872Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11872.1.p3MSTRG.11872.1.p3-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11872.1.p3.exon1MSTRG.11872.1.p3.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11872.1.p3.exon2MSTRG.11872.1.p3.exon2Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087_pilongenomesc0000087_pilon:1030041..1040492 +