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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000087_pilon:1002944..1007238+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.11869.1.p1 ID=MSTRG.11869.1.p1|Name=MSTRG.11869.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4295bp|location=Sequence derived from alignment at sc0000087_pilon:1002944..1007238+ (Clytia hemisphaerica_ch_hm2_pilon)
AAACAATTCTCTTCACGCAAAAACTTTGTAGATTGAAGGTTTGTGTACAG
GGAATAGAACGAAACAAAGTCCAGTTATCAGTCATAGGGTGAGTAAAACC
aagtattttttgtaaaacaaaacataaaagcTATTGAGATTTATTTGTAC
GAGGTATAAATGTAATTTGCTGTACAACCTCCGttcgaaaaagtttcttt
tacaCTTACACAGACGTCTGAACGCAAGAAAACTCTCGTTGCGGAGcgtt
ttaaccctattcatattATACTACCGTACTTACCTACCGgttgcgccaca
aaaaagtttctctctttgaaaccaaatttctcgaaatctaaaaattttga
aagaaccattcctatttcattggaaagaagaaagatagacttaaattttg
atgggtcatttattaaattcgattaattagattaaaagttatgctcaatt
gaataaaaatgttactttcagaaagtgctcgaaaacgttaaaaatcgacc
tatcaaatttttactttaaatttggcaatcgcaatagcctttacatgatt
aacagcatttttcattaactaaacagatacattttgaaactgaagggtcg
aaagggtttaaaatcatcatcaaaattaatttattttagttttaccaaaa
ttttcctgagatttttggttctagactggataaagtctatgtaagggtGG
ATctacacacccctgtctcagtaacccgGTAGAGTTTAAAAGCTCACCGG
GGTGGCTAAGAAAATAACAGGATTTCACCGGGGCAgatttttgactgaaa
aaagtCGCCGGGTTGTAAAATTTGAGGTAAACTTTCACCGGGGtacagtt
tttttatataaagaccAGTAAAATCTTTTGATGCTATGACTACTATTGTT
ATTTTAAGCATCAAATTGTTCTAATGCTTTTTATACTCCCTGATTGTAAT
ACTAAACCTCAATTTGGCTAAAATAGCCCCGGTCAAAAAAGGGAAATGCT
TATCGCCCTGtaccaaaaaattgaaaaattgaacccGGATGTTTATTGga
gttatttttttatcaacctATTTCAATGCTTCCAGTGAGTCTACATTCTA
AATACAAGGTCAATCTGAAGAGTAGTTCAAGATTTATGGCTAGTTTTCTG
TTTAATTAAATCATGCGAAATTAAGACAGTTTTGCCATGAAGGTTGCAAT
GCCCATAATATATGAAAATGTCTAAATTAACAAactaaaatgtatttttt
tccaataaataatcgcaaatacaaaaaaatatctttgcTAGCGAATACGT
GTATCAAACgaccaatttaatttttcaacagtTTTCAGTGAAATTACATA
AAACCCAAACGCTTTAAAGTCTAGTACATTGAATATGCGTAAAATATTCT
CATATAAACAATCTTAAATGTGTTCCTAGGGTTATGATGGAAAGCTCttc
aagtttaaaaagtaaatcgcaaaattgcaacacaaatttatttttctttg
ttaatttcatttctttatcactttattagttttcttcttatattattgtt
ctGTTTAAAATGTAAGAAgtttaagaaatatttatttataaaggaTGATA
TTTGACCGGGCCTCAactataaatttctaaaatttgaccgggttcaaatt
ttagattattttttgaCCGGGGTTaccaattttccaccggggacaaaatt
tggcctgtttttaggcatttttttcACCGGGCTACTCACCGGGGTGGATC
TGACCGGGCCACTGACTCAGGGGTGTatctacctcgaaaccaatatttga
tgtatttttatgaattctactagactttttggcctttttcgacgaatttt
cttcctttcattgaaattcaaccttcctttaaataacaaaaggtcattta
gacagctaattatcattttcaatgactgaaacgaaaatactgatatatca
tgTAGTTATGCTTCTGAATAATTTGATAGGtagatttttaacgtttttga
gcactttccgaaagtaacttttttattcaattgagcataacttttgatct
aatgaatcgaattcaataaatgacccatcgaaatttaagtttatctttct
tctttacaataaaataggaatggttcttttaaaattttagatttcgagaa
aattaattttaaagagagaaacttttttgtggcgcacccggtataacaat
ccaaaagcttccttaacaatcaaaagcgcCAGAATCGCAAATATCTAGAT
ATTGCTGCGGTATAAccacttttttgcaattttggcgCTTTTAATTGTCG
AGCGAGCGGTTGGATTGTTAAGGGTAAATACGGTAggcttttaaaacttt
cagaacTAGGGGatgggcttttcctgtaccatccctcaacttttgatcta
gttggtctttttcaatgaaatttggcacacaataTCCTTGTCATTTAAGG
TATACCGAAGGTTAACACTATTACAAAACTATCGGCAAATCACTAAACTC
TTTTATTGTCTCCTTTTCTTCTGATTTCAGGAAGTCAATCCAAAGAAGAA
CACCAAGATGCATATTATGTGGCTTCTTGTCCACCCCTTACTCATTCTAA
ACCTACTCAAAGGATCTTTTGGTAAGAGCCTCGACCTCATTGGTAAACAC
AAGAAGACCACTCTAATACCATACCATACCATACAAACACCAAAGCTTCA
ACAATGCTTCTCGATATGCCATTATAGTAAGAAATGTCGTGTAATGGAAA
CGACCCAAACAAATTCATTCAATTGTAAATTCTTCGATGTTACATTGCAA
GCCTCAGATATTACTGGCCCGGATCTTAACACAAATATTTATGCTGAAAC
ACGCAACTGTCAAGATTTGTACAATATCGGAGTACGGGCATCAGGAGATT
ACCACCTCAATCTTTTTGGTGATGGATACGAATATCTATTGTTTTGTCAT
TTTGATGCAGATGGAGGATGGATCGTTATACAAAGACACATTGATAATGA
ATTCTCTTTTCATCGCCAATGGGACGTATACAAAGAAGGATTTGGTGACT
CTAAAGGTACTCTTTCTTTTCTAGTTCACTTCAACCTAGATAAGGTTGTA
TTGCATAATGTTGTGATCTCTCTCGTGATACGCAAATTAAAATtacactt
tcttttataaggacaagaaaatttttgttaaggTTTTGGCAATTTTAACT
CCAAATAGGTCCTGCTATCCTGCCCTCGCTTTTAGGGAAAAGTTGGAGTA
TTTCTAGAGATAACAACCAACTTCAACCTTCCTTAGTTAATAATTTGCAT
AAAATTCAGCTCAGGCTTATTCTTAAATTGTACTTATTTTTTGACGTTTG
AGTGTAAGATGGAACAAGATAATTATATCTAAACTTACTTTCTTATTCAT
ATAGGAAGTTTCTGGTTGGGTTTAGAACTAATCCATAAAATCACCCGAGA
TCAATCTCAACAAGTCAAGATTGAAGCATTATCTTTTAGTGGCGATTCTG
CTATGGCGAAGTATGGTGCATTTTCAGTCGCAAGCGAAGATAAAAACTAT
CTTTTATCTGTTGATGGTTTCGATGCAATCGCAAGTAACAATAtggatat
tttaaaatattccaTTGGAATGGAATTCAGCACCTTGGAAAGAGATAACG
ATAATTATCAACATAATTGTGCAAATGGGTGGAATAGTAGAGGTGGCTGG
TGGTACGATACATGTGGGGATTTCATGCCAAATGCTCAGTGGTATCCAGA
AGAACAAGCATACAAACCGGTTGGCGATGGATGGAAGGGTATGAGGTATG
GACCCATCACTGAATCGTGGACTTTGAAATCAACACTAATATTGCTAAAA
CCAAAGGACAATTAATGGAACTGTATTGTTCAAATTCATGAAATGAATTC
TCTGTTCAAAAGAAGATGCAGCGTGCCTTTTGCCGAAAAAGATAAGCGAA
AGTTTCAATTGACGGCAGATTTTGGTGTCAGTACTGTGGTAGTTGTactt
tggccaaaattttgactttaaaattatttaatactgataaaaaatctgaa
agaaaatatttacagcaGACATACACCAAGGGCATGTGTGTGTGCGAAAC
TTTGCTTGGTAATTAAACAGGATCTGCTTGGATATTATGTAAAATGCAAT
AATTTAACGTATTGTGAAATGTTATTTATGTATTTCAACGTCATCAAATA
GGGCATTtctagtttgtttttttctgtattaaagttacattttatacGAC
CTGTTTTCGTGCACATTGTATATAGCCATCTTTGATGAAATAAAG Coding sequence (CDS) from alignment at sc0000087_pilon:1002944..1007238+ >MSTRG.11869.1.p1 ID=MSTRG.11869.1.p1|Name=MSTRG.11869.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1920bp|location=Sequence derived from alignment at sc0000087_pilon:1002944..1007238+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCATATTATGTGGCTTCTTGTCCACCCCTTACTCATTCTAAACCTACT
CAAAGGATCTTTTGGTAAGAGCCTCGACCTCATTGGTAAACACAAGAAGA
CCACTCTAATACCATACCATACCATACAAACACCAAAGCTTCAACAATGC
TTCTCGATATGCCATTATAGTAAGAAATGTCGTGTAATGGAAACGACCCA
AACAAATTCATTCAATTGTAAATTCTTCGATGTTACATTGCAAGCCTCAG
ATATTACTGGCCCGGATCTTAACACAAATATTTATGCTGAAACACGCAAC
TGTCAAGATTTGTACAATATCGGAGTACGGGCATCAGGAGATTACCACCT
CAATCTTTTTGGTGATGGATACGAATATCTATTGTTTTGTCATTTTGATG
CAGATGGAGGATGGATCGTTATACAAAGACACATTGATAATGAATTCTCT
TTTCATCGCCAATGGGACGTATACAAAGAAGGATTTGGTGACTCTAAAGG
AAGTTTCTGGTTGGGTTTAGAACTAATCCATAAAATCACCCGAGATCAAT
CTCAACAAGTCAAGATTGAAGCATTATCTTTTAGTGGCGATTCTGCTATG
GCGAAGTATGGTGCATTTTCAGTCGCAAGCGAAGATAAAAACTATCTTTT
ATCTGTTGATGGTTTCGATGCAATCGCAAGTAACAATAtggatattttaa
aatattccaTTGGAATGGAATTCAGCACCTTGGAAAGAGATAACGATAAT
TATCAACATAATTGTGCAAATGGGTGGAATAGTAGAGGTGGCTGGTGGTA
CGATACATGTGGGGATTTCATGCCAAATGCTCAGTGGTATCCAGAAGAAC
AAGCATACAAACCGGTTGGCGATGGATGGAAGGGTATGAGGTATGGACCC
ATCACTGAATCGTGGACTTTGAAATCAACACTAATATTGCTAAAACCAAA
GGACAATTAAATGCATATTATGTGGCTTCTTGTCCACCCCTTACTCATTC
TAAACCTACTCAAAGGATCTTTTGGTAAGAGCCTCGACCTCATTGGTAAA
CACAAGAAGACCACTCTAATACCATACCATACCATACAAACACCAAAGCT
TCAACAATGCTTCTCGATATGCCATTATAGTAAGAAATGTCGTGTAATGG
AAACGACCCAAACAAATTCATTCAATTGTAAATTCTTCGATGTTACATTG
CAAGCCTCAGATATTACTGGCCCGGATCTTAACACAAATATTTATGCTGA
AACACGCAACTGTCAAGATTTGTACAATATCGGAGTACGGGCATCAGGAG
ATTACCACCTCAATCTTTTTGGTGATGGATACGAATATCTATTGTTTTGT
CATTTTGATGCAGATGGAGGATGGATCGTTATACAAAGACACATTGATAA
TGAATTCTCTTTTCATCGCCAATGGGACGTATACAAAGAAGGATTTGGTG
ACTCTAAAGGAAGTTTCTGGTTGGGTTTAGAACTAATCCATAAAATCACC
CGAGATCAATCTCAACAAGTCAAGATTGAAGCATTATCTTTTAGTGGCGA
TTCTGCTATGGCGAAGTATGGTGCATTTTCAGTCGCAAGCGAAGATAAAA
ACTATCTTTTATCTGTTGATGGTTTCGATGCAATCGCAAGTAACAATAtg
gatattttaaaatattccaTTGGAATGGAATTCAGCACCTTGGAAAGAGA
TAACGATAATTATCAACATAATTGTGCAAATGGGTGGAATAGTAGAGGTG
GCTGGTGGTACGATACATGTGGGGATTTCATGCCAAATGCTCAGTGGTAT
CCAGAAGAACAAGCATACAAACCGGTTGGCGATGGATGGAAGGGTATGAG
GTATGGACCCATCACTGAATCGTGGACTTTGAAATCAACACTAATATTGC
TAAAACCAAAGGACAATTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000087_pilon | genome | sc0000087_pilon:1002944..1007238 + |
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