MSTRG.11817.1.p1 (mRNA) -

Overview
NameMSTRG.11817.1.p1
Unique NameMSTRG.11817.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000087_pilon:202711..206037-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11817.1.p1 ID=MSTRG.11817.1.p1|Name=MSTRG.11817.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3327bp|location=Sequence derived from alignment at sc0000087_pilon:202711..206037- (Clytia hemisphaerica_ch_hm2_pilon)
TGATTGTCTCCAGTGTCAGTGTAACAAAGATGAGGTATTCAATTTAACAT
ACATTTTCATGGTCATTCATATACAATATTTTGACCTGCTTAGTACAGAT
CAGAACATAAAAACGGTTGAAGACTCGCTACTCCATTTGGCATAAAAATT
TGCTAAATTGTAAATTTTTTTATTAATTGTGTGTAGAGAGCAAGACAAAG
ATATCGTTATAATAAATAATTATTATTATTATCAAATAATCGATTACAAA
GCTCTAAAAGGTTTAGTAGTGTTGCATTGTGTCAAAGAAATAAAAAAGAA
ATTGTTTATTCTAATATGTGAAGGACAGTAATTAATTATCTTGACGTCAT
TTCTTATGACATAATTAACGACTGTTTCTAATTAGCGGTATATAAAGGAT
TATTCTACTCTTTCCTTTAAGATTCAGAATCAAACGAAACATAGAAAGTG
TACAGCCAACACACATATAAACGCATGGTAAGGTATTTACAATGGATTGT
TTTTTTATGTTATTTTTCCCTTGCGTTTTTATCTTCGTCAAGTCGTTTTG
TTTTTTGGATGTTTTTTTCTTTCTCCTTCTTCCTTATTGAATCTCATATT
TACTTCATCTTTTCCAGAACAAGATGAAACAATGGACTATTTTACAAGTG
ATTGTTCTACTATCACTCTCCATGTTGCTCAATGCACAAAACATAACAAC
AACACAAATCAACTCGACCACCACAACCACAGCTGCACTACCTATCGTCT
CTGAACAAAATACTACAATATCAACGACCATTCCACCTTCGACAACAACC
ACCTCTGCCCCAGAAACAACCACCTCTAATCTATCGACAACCACCCCTGT
TCCATCGACAACAACAACCTTACCACCACCGGTAACAACGATTACTCTCC
AATCAAACTCTTCGGAAAACACAACGACAACTAATTCAACAATTACAACG
AACACCCCCACAACTACAAAGACCACCCCTACAACGACAACAACCACCCC
CACAACAACAACGATCACCCCTACTACCACAACGACCACCACTACACAAC
CCCCAAGTGCCTCTCCGTCAATCTACAACATGACTTTCAGCGCCATCAAT
GAAACTTCTTACTGCAATTGTAATGGATATTTATTCCAAAACGCTGATGG
AACAACAAAATTATGTAGTTGTTTCGAAGATTTCCATGGTCTTCAGTGTG
AAGATAAAGTCAATACGTGTAAGTTAAATTTTGATTTTTTGACTGGAATG
TTACAAGTTTTAAAACAGCTCATCTATCTACTTTTCTTAACGCTTTATTA
TGTGAGCAATTATTTGAAAACTTGAGAAATAATTTAATGTTTCGACAACA
AATATTGATCAAAAAAGTTTTCATTTTGTTGATTAATAATGAAGAATCGT
TATTTCAAAGTGTTTTTTAATTAACAGTTGGAGCAATGAAAATAACGAAA
GACTTGTTATCAATTATCTCATTTAAATAACAACTTCCTTGACTTTGGAA
ATCCTGGGGAAACTTCCGCTTTTCAATTGTCCATTCAATGATGAAATTAT
AATCAATTTTCTTCTCTCTTTTGTAGGGTTACTGAAGATCGTTTTCGCTT
TGGCAATCTTGGCCGTCATCTTCTTGATCGCTGCAATTTTCACTGGTTGC
CAATGGCATTCTCGATTAGGGTAAGTCTCAAACTAACGTGAAAAAGTAAA
AGCACCAATAAGGGGGCCATTAATGCCTACTTGAAATTTGCTTCAATCTC
TTTCAATAAATTCAAGCACATCACTGAGTAAGAGATCAAGTAATATTGAA
AAGGAGCTAATGGATAATACTTCTGTCTTATTCATGATATGCACCACTGC
AATGTCTTCTGACATTACATCATGGACCCAATAGCTCATTGGTTGGAAGT
GACGTAAAAGCAGTCAATACGTCACTTTCAACCAATCAGCTATTGGGTGG
AACGGAAGACATTGCAATGGTGCATATCATGAATATAAGCCTAAAAACAA
TTTCTTACCTCAAATTTTCATTGTATCGTTCAAACGTTCACTTTCTTTTT
TATAAGGTTTAAGTTTTAATTTTCATATCTATTTCATTTATAATAGAGAC
ATCGAAGAAAAAGAAGCTAAAGTGAAAAATTTAGCACACGAAAAAGACCA
ACTCAAAAAGCAAAACTTGGACCTCCGACGTCGCTCACCGTCCCCATCAG
GTCGACCAAGGTCTAACTATGCACCCTCTAATTACGCCCCTTCAGTCGTG
GGTAGTCCCAATGGAGGGTTTTATGACGATGACAGACGATCAGTTATGGA
TATGAGCATGCCCACATTTGATGCCATGCAACAAAAAAGACTGAGTCAGC
AATTTACAGCCAATGGGGACGTTGCCTTGGAGATGGAGGAGGACGAGTTG
GACGCAACACCCAACGAAAACAAAGATGGTGGAAATATGTTGAACCCTGA
TACTGTCTCAATACATTCAGCATCAACGACCAACAGTGAAATGGTTCTCA
TTCCCAAATCCCCAAGAAATAATAAACAAAGGCGTCCAGTATCTCAAGAA
ATCCCTTCAAACGCCATCATTGATAATCGTGGGTATATGGTTCAACCAAG
AGGAGCTCGTAGTCGATCCCCAAGTCCTACCAATAGTCATCATTCAGATT
TAAGTATGGAAAACATGAAACAATTTGATCGAAATGGTGGCTTGATGGAA
CCTCAACGTGGACGAGCAAGAAGTTTGATGGATTTGAGAGTAATCGCTTT
GACTGGTGAAGCTCAGAAATATCCTGGTGAAACACCGGGATCAAATTTAT
ATAAATCTAAAAGTATTGAAAACATTTTAACAGGACAAGTGCATAAACTA
TCACCTCAAGCACCTTCTTCCAATGTGTCGACCAGCTCTGGGGGAAGAGG
CCGACCAATGGGTATCTTTGCACAACAGCAACAAAGAGATATGGCTGATT
CTGCTTTTTGAGATGATGCAGATGTTATGGCATTCTTTGAATAGTTTTAA
TTTATTATGAATATTTATTTTTAATTTTCATTTGGGAGGGTGGTATCAGA
AAGTTATCATTATTATGTAAATTATATTTAGATTTAAAAAGCAGTATTTT
TCAGCATCCATAAAAAAAAGAATTTAGTTACTATTTTTATACCTACATTA
AAAAGTATAATTTCGTTTTTCAACGCTATGATTTCTTCAATATTAAGGAT
TTTGAAAATTAGAATGTTGTTTCTTATATATAACACTGTTTTAAAGTCTG
TCTCAAAATAATTTGCCGCTGAGACAAAAACGGCTGTCACTTTTGATAAA
ATTTGAATCAAGTTGCGGTTCTGTGCT

Coding sequence (CDS) from alignment at sc0000087_pilon:202711..206037-

>MSTRG.11817.1.p1 ID=MSTRG.11817.1.p1|Name=MSTRG.11817.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6252bp|location=Sequence derived from alignment at sc0000087_pilon:202711..206037- (Clytia hemisphaerica_ch_hm2_pilon)
AGACATCGAAGAAAAAGAAGCTAAAGTGAAAAATTTAGCACACGAAAAAG
ACCAACTCAAAAAGCAAAACTTGGACCTCCGACGTCGCTCACCGTCCCCA
TCAGGTCGACCAAGGTCTAACTATGCACCCTCTAATTACGCCCCTTCAGT
CGTGGGTAGTCCCAATGGAGGGTTTTATGACGATGACAGACGATCAGTTA
TGGATATGAGCATGCCCACATTTGATGCCATGCAACAAAAAAGACTGAGT
CAGCAATTTACAGCCAATGGGGACGTTGCCTTGGAGATGGAGGAGGACGA
GTTGGACGCAACACCCAACGAAAACAAAGATGGTGGAAATATGTTGAACC
CTGATACTGTCTCAATACATTCAGCATCAACGACCAACAGTGAAATGGTT
CTCATTCCCAAATCCCCAAGAAATAATAAACAAAGGCGTCCAGTATCTCA
AGAAATCCCTTCAAACGCCATCATTGATAATCGTGGGTATATGGTTCAAC
CAAGAGGAGCTCGTAGTCGATCCCCAAGTCCTACCAATAGTCATCATTCA
GATTTAAGTATGGAAAACATGAAACAATTTGATCGAAATGGTGGCTTGAT
GGAACCTCAACGTGGACGAGCAAGAAGTTTGATGGATTTGAGAGTAATCG
CTTTGACTGGTGAAGCTCAGAAATATCCTGGTGAAACACCGGGATCAAAT
TTATATAAATCTAAAAGTATTGAAAACATTTTAACAGGACAAGTGCATAA
ACTATCACCTCAAGCACCTTCTTCCAATGTGTCGACCAGCTCTGGGGGAA
GAGGCCGACCAATGGGTATCTTTGCACAACAGCAACAAAGAGATATGGCT
GATTCTGCTTTTTGAGGTTACTGAAGATCGTTTTCGCTTTGGCAATCTTG
GCCGTCATCTTCTTGATCGCTGCAATTTTCACTGGTTGCCAATGGCATTC
TCGATTAGGAACAAGATGAAACAATGGACTATTTTACAAGTGATTGTTCT
ACTATCACTCTCCATGTTGCTCAATGCACAAAACATAACAACAACACAAA
TCAACTCGACCACCACAACCACAGCTGCACTACCTATCGTCTCTGAACAA
AATACTACAATATCAACGACCATTCCACCTTCGACAACAACCACCTCTGC
CCCAGAAACAACCACCTCTAATCTATCGACAACCACCCCTGTTCCATCGA
CAACAACAACCTTACCACCACCGGTAACAACGATTACTCTCCAATCAAAC
TCTTCGGAAAACACAACGACAACTAATTCAACAATTACAACGAACACCCC
CACAACTACAAAGACCACCCCTACAACGACAACAACCACCCCCACAACAA
CAACGATCACCCCTACTACCACAACGACCACCACTACACAACCCCCAAGT
GCCTCTCCGTCAATCTACAACATGACTTTCAGCGCCATCAATGAAACTTC
TTACTGCAATTGTAATGGATATTTATTCCAAAACGCTGATGGAACAACAA
AATTATGTAGTTGTTTCGAAGATTTCCATGGTCTTCAGTGTGAAGATAAA
GTCAATACGTATGAGACATCGAAGAAAAAGAAGCTAAAGTGAAAAATTTA
GCACACGAAAAAGACCAACTCAAAAAGCAAAACTTGGACCTCCGACGTCG
CTCACCGTCCCCATCAGGTCGACCAAGGTCTAACTATGCACCCTCTAATT
ACGCCCCTTCAGTCGTGGGTAGTCCCAATGGAGGGTTTTATGACGATGAC
AGACGATCAGTTATGGATATGAGCATGCCCACATTTGATGCCATGCAACA
AAAAAGACTGAGTCAGCAATTTACAGCCAATGGGGACGTTGCCTTGGAGA
TGGAGGAGGACGAGTTGGACGCAACACCCAACGAAAACAAAGATGGTGGA
AATATGTTGAACCCTGATACTGTCTCAATACATTCAGCATCAACGACCAA
CAGTGAAATGGTTCTCATTCCCAAATCCCCAAGAAATAATAAACAAAGGC
GTCCAGTATCTCAAGAAATCCCTTCAAACGCCATCATTGATAATCGTGGG
TATATGGTTCAACCAAGAGGAGCTCGTAGTCGATCCCCAAGTCCTACCAA
TAGTCATCATTCAGATTTAAGTATGGAAAACATGAAACAATTTGATCGAA
ATGGTGGCTTGATGGAACCTCAACGTGGACGAGCAAGAAGTTTGATGGAT
TTGAGAGTAATCGCTTTGACTGGTGAAGCTCAGAAATATCCTGGTGAAAC
ACCGGGATCAAATTTATATAAATCTAAAAGTATTGAAAACATTTTAACAG
GACAAGTGCATAAACTATCACCTCAAGCACCTTCTTCCAATGTGTCGACC
AGCTCTGGGGGAAGAGGCCGACCAATGGGTATCTTTGCACAACAGCAACA
AAGAGATATGGCTGATTCTGCTTTTTGAGGTTACTGAAGATCGTTTTCGC
TTTGGCAATCTTGGCCGTCATCTTCTTGATCGCTGCAATTTTCACTGGTT
GCCAATGGCATTCTCGATTAGGAACAAGATGAAACAATGGACTATTTTAC
AAGTGATTGTTCTACTATCACTCTCCATGTTGCTCAATGCACAAAACATA
ACAACAACACAAATCAACTCGACCACCACAACCACAGCTGCACTACCTAT
CGTCTCTGAACAAAATACTACAATATCAACGACCATTCCACCTTCGACAA
CAACCACCTCTGCCCCAGAAACAACCACCTCTAATCTATCGACAACCACC
CCTGTTCCATCGACAACAACAACCTTACCACCACCGGTAACAACGATTAC
TCTCCAATCAAACTCTTCGGAAAACACAACGACAACTAATTCAACAATTA
CAACGAACACCCCCACAACTACAAAGACCACCCCTACAACGACAACAACC
ACCCCCACAACAACAACGATCACCCCTACTACCACAACGACCACCACTAC
ACAACCCCCAAGTGCCTCTCCGTCAATCTACAACATGACTTTCAGCGCCA
TCAATGAAACTTCTTACTGCAATTGTAATGGATATTTATTCCAAAACGCT
GATGGAACAACAAAATTATGTAGTTGTTTCGAAGATTTCCATGGTCTTCA
GTGTGAAGATAAAGTCAATACGTATGAGACATCGAAGAAAAAGAAGCTAA
AGTGAAAAATTTAGCACACGAAAAAGACCAACTCAAAAAGCAAAACTTGG
ACCTCCGACGTCGCTCACCGTCCCCATCAGGTCGACCAAGGTCTAACTAT
GCACCCTCTAATTACGCCCCTTCAGTCGTGGGTAGTCCCAATGGAGGGTT
TTATGACGATGACAGACGATCAGTTATGGATATGAGCATGCCCACATTTG
ATGCCATGCAACAAAAAAGACTGAGTCAGCAATTTACAGCCAATGGGGAC
GTTGCCTTGGAGATGGAGGAGGACGAGTTGGACGCAACACCCAACGAAAA
CAAAGATGGTGGAAATATGTTGAACCCTGATACTGTCTCAATACATTCAG
CATCAACGACCAACAGTGAAATGGTTCTCATTCCCAAATCCCCAAGAAAT
AATAAACAAAGGCGTCCAGTATCTCAAGAAATCCCTTCAAACGCCATCAT
TGATAATCGTGGGTATATGGTTCAACCAAGAGGAGCTCGTAGTCGATCCC
CAAGTCCTACCAATAGTCATCATTCAGATTTAAGTATGGAAAACATGAAA
CAATTTGATCGAAATGGTGGCTTGATGGAACCTCAACGTGGACGAGCAAG
AAGTTTGATGGATTTGAGAGTAATCGCTTTGACTGGTGAAGCTCAGAAAT
ATCCTGGTGAAACACCGGGATCAAATTTATATAAATCTAAAAGTATTGAA
AACATTTTAACAGGACAAGTGCATAAACTATCACCTCAAGCACCTTCTTC
CAATGTGTCGACCAGCTCTGGGGGAAGAGGCCGACCAATGGGTATCTTTG
CACAACAGCAACAAAGAGATATGGCTGATTCTGCTTTTTGAGGTTACTGA
AGATCGTTTTCGCTTTGGCAATCTTGGCCGTCATCTTCTTGATCGCTGCA
ATTTTCACTGGTTGCCAATGGCATTCTCGATTAGGAACAAGATGAAACAA
TGGACTATTTTACAAGTGATTGTTCTACTATCACTCTCCATGTTGCTCAA
TGCACAAAACATAACAACAACACAAATCAACTCGACCACCACAACCACAG
CTGCACTACCTATCGTCTCTGAACAAAATACTACAATATCAACGACCATT
CCACCTTCGACAACAACCACCTCTGCCCCAGAAACAACCACCTCTAATCT
ATCGACAACCACCCCTGTTCCATCGACAACAACAACCTTACCACCACCGG
TAACAACGATTACTCTCCAATCAAACTCTTCGGAAAACACAACGACAACT
AATTCAACAATTACAACGAACACCCCCACAACTACAAAGACCACCCCTAC
AACGACAACAACCACCCCCACAACAACAACGATCACCCCTACTACCACAA
CGACCACCACTACACAACCCCCAAGTGCCTCTCCGTCAATCTACAACATG
ACTTTCAGCGCCATCAATGAAACTTCTTACTGCAATTGTAATGGATATTT
ATTCCAAAACGCTGATGGAACAACAAAATTATGTAGTTGTTTCGAAGATT
TCCATGGTCTTCAGTGTGAAGATAAAGTCAATACGTATGAGACATCGAAG
AAAAAGAAGCTAAAGTGAAAAATTTAGCACACGAAAAAGACCAACTCAAA
AAGCAAAACTTGGACCTCCGACGTCGCTCACCGTCCCCATCAGGTCGACC
AAGGTCTAACTATGCACCCTCTAATTACGCCCCTTCAGTCGTGGGTAGTC
CCAATGGAGGGTTTTATGACGATGACAGACGATCAGTTATGGATATGAGC
ATGCCCACATTTGATGCCATGCAACAAAAAAGACTGAGTCAGCAATTTAC
AGCCAATGGGGACGTTGCCTTGGAGATGGAGGAGGACGAGTTGGACGCAA
CACCCAACGAAAACAAAGATGGTGGAAATATGTTGAACCCTGATACTGTC
TCAATACATTCAGCATCAACGACCAACAGTGAAATGGTTCTCATTCCCAA
ATCCCCAAGAAATAATAAACAAAGGCGTCCAGTATCTCAAGAAATCCCTT
CAAACGCCATCATTGATAATCGTGGGTATATGGTTCAACCAAGAGGAGCT
CGTAGTCGATCCCCAAGTCCTACCAATAGTCATCATTCAGATTTAAGTAT
GGAAAACATGAAACAATTTGATCGAAATGGTGGCTTGATGGAACCTCAAC
GTGGACGAGCAAGAAGTTTGATGGATTTGAGAGTAATCGCTTTGACTGGT
GAAGCTCAGAAATATCCTGGTGAAACACCGGGATCAAATTTATATAAATC
TAAAAGTATTGAAAACATTTTAACAGGACAAGTGCATAAACTATCACCTC
AAGCACCTTCTTCCAATGTGTCGACCAGCTCTGGGGGAAGAGGCCGACCA
ATGGGTATCTTTGCACAACAGCAACAAAGAGATATGGCTGATTCTGCTTT
TTGAGGTTACTGAAGATCGTTTTCGCTTTGGCAATCTTGGCCGTCATCTT
CTTGATCGCTGCAATTTTCACTGGTTGCCAATGGCATTCTCGATTAGGAA
CAAGATGAAACAATGGACTATTTTACAAGTGATTGTTCTACTATCACTCT
CCATGTTGCTCAATGCACAAAACATAACAACAACACAAATCAACTCGACC
ACCACAACCACAGCTGCACTACCTATCGTCTCTGAACAAAATACTACAAT
ATCAACGACCATTCCACCTTCGACAACAACCACCTCTGCCCCAGAAACAA
CCACCTCTAATCTATCGACAACCACCCCTGTTCCATCGACAACAACAACC
TTACCACCACCGGTAACAACGATTACTCTCCAATCAAACTCTTCGGAAAA
CACAACGACAACTAATTCAACAATTACAACGAACACCCCCACAACTACAA
AGACCACCCCTACAACGACAACAACCACCCCCACAACAACAACGATCACC
CCTACTACCACAACGACCACCACTACACAACCCCCAAGTGCCTCTCCGTC
AATCTACAACATGACTTTCAGCGCCATCAATGAAACTTCTTACTGCAATT
GTAATGGATATTTATTCCAAAACGCTGATGGAACAACAAAATTATGTAGT
TGTTTCGAAGATTTCCATGGTCTTCAGTGTGAAGATAAAGTCAATACGTA
TG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11817MSTRG.11817Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11817.1.p1MSTRG.11817.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11817.1.p1.exon5MSTRG.11817.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11817.1.p1.exon4MSTRG.11817.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11817.1.p1.exon3MSTRG.11817.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11817.1.p1.exon2MSTRG.11817.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11817.1.p1.exon1MSTRG.11817.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087_pilongenomesc0000087_pilon:202711..206037 -