MSTRG.11815.1.p1 (mRNA) -

Overview
NameMSTRG.11815.1.p1
Unique NameMSTRG.11815.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000087_pilon:181717..188627-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11815.1.p1 ID=MSTRG.11815.1.p1|Name=MSTRG.11815.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6911bp|location=Sequence derived from alignment at sc0000087_pilon:181717..188627- (Clytia hemisphaerica_ch_hm2_pilon)
GCCACACTTACTACAAATTTTACAATTGCCATAAATGGCAAGTTTGTTTT
GGTGAATGAAATCACGGAAAAACATAGGTAAATGGTAGCTTCACAAATCA
GAATCAAAGGGTCAAATTTTTTGTACCTTCTGGTGTCCAACTTTTTTGTC
AACTTATCTCGAATTATTCCAATAAAGAAATGTTTTCTCGGCCAAGTTCA
GGGGAAAGAAGCAGACCTTCAAGTATCACAAGAAGTATTCGTGGAAGTTT
TTCCTCTGGACTCGAAGTTCTCCCCCCAGACTTGCGTGATGTCACTACTC
CACTTGAAATTGAAGTTGTTGAACAACATGACGATACCAATGATTTTTCA
GAAGTAGAGGAAGCTGTCTGCAGATCATCTACATCCATTGCAGACAAGGA
AGTGAAAAAAGATACAAATGGTAATATAAGACCTTTTCAATAGTCGTTTG
GGAGAACTACTTTTACAAACTCTTCGGTATAAAACCGACCGTCTACGCAC
TACGGTGTGTGTGTCAAGGCGGCAATCACAAATATCTTTGTTTCGCATCG
CCCGACCGACTCTTGAAAATTGAGTAGAATTGAGTCGGTGAGTCGGTAAA
TTTTTTTGGACTTTTTCTTTCCTTCGTTCAAAAATTTTATTAATTGCCGA
TTTTTTGCGAGTGATTTCTAGCGCATTCACAGCATTTTAGCTTTGTTTAT
CATTACATGCACCATTCATTTTGGTTGGAGGTCACAGTGTTCAAAGGTCA
TAATTTGAAATCACCCATAACACACGCAGTTGTTTTGGCTACTGGCTGCT
GGCTGGCTGGTAGTTTCCTTCAAGAATACACTCCAAAAAAGGATGATGGA
GGTAAGAAAACCCAAAATTTTTTACGACCGACCGACCGACTGACAGACTC
ACTTTTTAGACCCAACAAGGACGGGAAATGAAGATATTTGTGATTGCCGT
CCAATGCAATCAAACAAGTTCGTGACACAGTCTGGAATTTAATTTTGTCT
TTTCAATTTCTGACCATTTTTTTATGTGTGTTTTTTAATGTTATACCGTG
AGTGGTCCTTAATCCGACAGCCCTGCCTAAATCCGACCCCCAAATAGCTG
CTATGAAAAAAAATGTTTTTACAAACATTCCTTCTCCAAGTTGAACAATG
AACTATTGCAAGAACTCTCGAAACAAAACATCTAGCAAGATGACTATAAT
GTAAAGATGTCAATTTTAATATAATGTGGTCAAAAAAGTGTGAGTTGTAA
AAATAATTACCTCTATTATTCTGAATCCGTGCTCGTGTTTAAATTAAAAT
GTTAACAATTTTGTAATAAAAAATTATGTTTTGTATAAGAAGCAATTATT
TTTATTTTCATGGTTCATGGTTCAGTATCAAATCTCTCAGTTTAATAGTA
GACACTTTGGTATCTTCATTGCGTCACTGCGAAAAGTCTGTTTTTATTTT
AGTTTGTATCTTTGAAGACCCCATCAGATTTAAGCAGGGCTGTCGGATTT
AAGACCACTCACGGTAAATGTTGAAATTTTACCATTTTTAGTATTATTTT
GTATTCTTTGAAAAGTGTCTTTTGACTTTAAATAGACCTTTTCGTCTTTC
CATTCCCCATTTTGAATTGTATGCAAAAATACAGAAATGATAAAGCTGTG
GTTGGATATAGTTGGAAAATATGCAAAACATTAACAAAGATTAAAAAGAC
AACAAAGCATCTTATAAAGAAATATTATAATCATTAGGGGCCACTCACAT
ATCGATTTTTCCAACGTTTTTTTCTATTTCTTCTCCTATCCTTTTATTTG
CATAAGCCTAAAAAAGCTAACATCACAAATATGCAGCGTCATTCTGTCGC
TAATTAAAAAACCCACCCATCCCCTACCCTAGCGTCATATTATGAAACAT
ACCGAAAATCGATGAAACCATTTTCGTTCTTTCTCACTTCGGGTATTGAC
GTTTCACTGCCAGAGAAGTTGCTTGGTACATTTCGCTTGTTTTCCGAGTA
GTTATTTCGGTATATGAATTTTATATGAATTAGTTCCCAGACCCGCATAA
GTTATGGCGCGGGGAAAAAAGCCCCAAACTTTTTTAACATAATGAGCATC
TCCGGCATTTTACTATGCCGGTTTATTCTCGATGTCGTGAAAAAGAGACA
AATTTGACGTTTTGTTGAATCTTGACAAATGAAGAGGCTGCTACCAGAAA
AATAATAAGTATGAAAATTATAGTTGGGCCTCGAAAATCTAAATTTCTAG
TAGATTTTCTTAGTCTATCTTACTCGATCTAACCCACCCACCCTATAGCA
TCGGAATGATGCTAAGTGTGGGGAAATAAATATGTGAGTGGCCCCTTAGA
ACAATAAAAGATGGAATTTCTTAATCAAAAAAGAAATATTTACAGAACAA
GAAAAGCAGCAAAATAAATTATTTCTTAAAGACATAGCAGCATATTCTGT
TGTCATGTCATTAAAAAATTCCACAAAGACGGAATAAACACATCAACTTT
CAAAACACGCAAACTGAAAGCAGTATTATGACGTCACACATTCTTTCCCG
TGCAAAAAGATATTAAAACCCCCGCTTTGATATGCAAGGTCAAGCCAAAC
ACGTCAGTAAAAACCGCTGTAAATCGGGGGGTTCAGTGATTTGATCATTT
GGCAGTTTTATTCAGAGGAGAATAATTTACCGTCAGCTGAATAAGGATTA
TTTTTTTACCTTCGCTGGTGATTTTTCAGTTTGAGTTTATGTCTAATGTT
ATGGATTTTTGAAGTGCTTGTCGTATCAAGATTACAGGATGCGGATTGCG
GGCCGATTTCACTTTCATTAATTTTGAGTGATTTCATTTTCGATTTCAAG
CCAACATCTTAGCAACGGGGTGCTTGCTCATAGTTACAGGGGTTTGTGCA
AAAAACCAAACATAGAAAGGTCTAGGTAATTTAGGAATAGGCTTATTACG
AAGTAAATTTGAGAAACATTATTCCAGAGAAAGTTATTAAGATGGTGAGC
TATTTTGTCTCAGACTGCTCTTGGGTACCTAGTAGCCGGGGGGATTGGAA
TAAGTGGGGGGATTGGAAAAACTCTCAAAACTTAATAAGCGGGGGAGTGG
TTGGAATAAAAATGTCCTGGGTGGAAAATTTTTGAAAAAGAGGCTAATTA
GCAGAATTAGGACTAAAGAGGGGAACTTTCAAAAACATTTTCCCAAAATT
ATTAAGGGGGGGGGGTTGGAATAAAAATGTCCTGGGTGGAAAATTTTCGA
AAAATTAATTAGCGGGGGCAGCATTAGCATTAGGTACCCGAGAGTACTCA
TTTACACTTTAGAAATCTTAGTTCAAAACCTTTTGATTTTATTTTATTTG
CAGAAAAAAAAATCTATGTAGTAGGTAGAATGTAAGAACTCGACCTCACA
GTATATTTTATTATCATCATTCATTTGTTGCTTGTCAATTCGATTTCTAT
CTATCTATCTATATATTTAAGCATGAACATATAAACGACTGGACATCCAT
CTCCTTTGTCTTTTTGAAGATAACACAACTAGCTTCGTTGCCGCCTCGTT
GAAAGTATAAAATGAAACAATAGATTTTGATGATATGCCACTTGGGAATA
CCTTGCTAACAACGTCAAAACTTCGACAAAAGTCTCTGTTGTTCTACTCT
TCTCAAGTCTTTTATCTATATCATAACAAAGATAACAGTGGCAAAATCAT
CGTCAGCTTGTCAAAACTCCGACTAATATTCCTAAATTTTGACTTAAAAG
TGTCGAATAATTTTAGAGAGTGTCACATTCTAATTTAATTTCGATATTCT
TAGTACACGGGCTCTCGACTTGGGAAAGCTATTTTTTTCAAGTCATGGAA
AAAAATTATAGGAGTGACAAAAGGGATTCAAAAGTATAAGTACACGCAGT
TAAAATTCTGCATTTCAGAGTTGAAAATGTTGATAAAATATATTAGTAGG
GGGAAATTTGTAAAATCGCTCGAATTTTTTAGTCAAAGCACTTGTTATAC
ATTTTTGGAAAGCTAAGGGGTAGGGGAATTAAAATAACTTGGGTGCCAAT
TTTTTTTCGGACACTTAGGTGTGATTTTCGGACAAATACGACGGTCTCAG
GCAAAAATCATTAGGTGAAAAATTAATGAAAATTTTAGCTTGAGAAAACG
GAGACCTGTTGTATATTTTTGGAAAGCTCTCAAAAAATTAAGATTAGTGA
TATATTGCGAGTATAGGTGATTTCAGTACCTAACTCGAGATATTGAGCTT
CCGAAAGCGCAAAAACTGGACAAAACAGCTGTTTCTGGCTGAAAAACACT
GAAAAACACTGTTTTCAAGGATTAATATCTCGAGTTAGGTAAAGAAATCA
CCTATACTCGCAATATATCATTAAACTTAATTTTTTGAGAGCTTTCCAAA
AATATACAACCGGTCTCCATTTTCTCAAGCTAAAATTTTCATTAATTTTT
CACCTAATGATTTTTGCCTGAGACCGTCGTATTTGTCCGAAAATCACACC
CAAGTGTCCGAAAAAAAATTGGCACCCAAGTTATTTTGATTCCCCTACCC
CTTAGCTTTCCAAAAATGTATAACAAGTGCTTTGACTAAAAAATTCGAGC
GACCTCAAAAAAACGAACAAATTTCCCCCTACTATATTACAAACGAAAAT
AATTTTTTGTGCATTAGTAGTAACGTTCAAGCTCTATCAATCTTTTTACC
TAAATAATTCAAAAAAATAAAATTATGACGGAATGTTGTCGGATTTTTCA
TATCAATTTTGAAATACAGGCGGCAACGAAGCTCGCTTCAAAGAGACAAT
AAAAGATAGATGTCCAGTCGTTTATATGTTCATGATTTAAGTAACATCAG
GCCCGAAGGCCCATTCTCGCTACATATAAAAATACAATGATAGTCATATA
AAAATCTTACATGATTGAATTATAAAAACAAATAAAAGAAAGCCTGAGAG
GATGTTGAGAATTTTAAGGTATATGTAAAATTTTGGTATTCTGACGAAAA
TTGTGGTTTTCAAATTTTATGTATCAAAATACTGCAAGATTTTATTTTAT
ATTTTCAATGCGAATAAGAATTAAGGGACTTAAAGTTTGAAAGCTTCTTC
GAAAACAGGAGCTTAACGAATAACAATATTTCGAATTTGGGGTGTCATGT
TATCATTAACTATTTGGGCAGATTTGGGTATCGTGCACGAGAACCTGGTA
ATTAATTTTTCGAATATTGTACAGGAGAACCTAGATGAATTATACCAGAT
TATACACTGAATATTATCTTTTTTAATGAATGTCATTTTGGCTGTTTCAG
AGGAAATATTTTTATCCATATCTCTGCAAAGTAGTTTTCTCAAACTGTAA
AAAAGGCCGATCAGGTAGCTCAAGGTAACACAAAGGGATTTTGAAAAGTA
ACCGTTTGTATATAATTCATTTTCAGATACAACTGCATCGAAAAAAGAAG
AAACAGAGTTGGAAAGGAAAATTCGAAAAGGTCTAAAGAAGATTGAAAAG
CTTGACAAAATACTGACCGATAAAATTGAAAAGGAGAGAGAAGTAAAACG
AGAGAGGTTTGCTCTTGAAAGAGATTTCCAAACACAAATCCAAACGTTAA
TTCAAGAAAAAGGTTTAGAGAATATAGTGGGTTCACAACAATTACTTTCC
CTGTGTGCTGCAACTGATTTAAAACCTAATGAAGACTGTGATGATGATTT
CACAAACCAAATTTTTAGCACTCAAATTGACAGTCAATTTTATGAGAAAC
GCAACTCTTCTTCACAAAGCAACGATCTGAGCGAAGATGTAGAAGATGAT
TCAAACACTGAGAAAAAAAGCAAAAAGGATAAAAACAAGACGGACTTTAT
TAGACGAAATATTCATCTAGCTTCTCATTTCAATGAAACTGTTGCCTTGA
CAGATGAAGAGAGAAAGAGACTTGAAGAATTGCTATCTGATGATACTGAT
TTATTGATCGGGGAAAACCCTTTCTCGACGCCCGCGATTAAGGACGACGG
GTTTCGATTTTCTATTAACGATCAAAAATTGATCGAAGATATCGATTTGC
AATTGAAAGAATTTCTCTCAGAGGAAGAGTATAACTCGGCTATGTTAAGT
GAGAGCCAAACCACGGTTTCCAGTATGACGTCAACTCGTTTTGATGAAGA
ATTTACATCAGTTGAAGGTCTTGCGGCATGTGGCGAGAAAGTTCTAAACG
AAGGCCATGATCAGAGAAACATGGTGCAGCGGTTAAACGCGATCGAAGAA
AAACTACAACAACTTCGTTTGACTGCAGACTCACCCACTTATGAGAAAAT
CGATCCAGATTTGCTGAGATCACTTTTGAATGTTGATTCTCGAATGACTT
CAGATTCTAGAAGTATTTGTGATAGTGTTCGAACGAATTCTGAAATTTGT
TTCGAAGGTGATGAGAATTGTACCGATGTCTCCATAGATGAATCTTACGA
TCCAAGAGAGAGTGTGATTTCACAGAACGACTGATGACTTACATAAAATA
TTGTATACATACAGTGTACCGAGTATGGACAGAATTTATAAAGAGTGAAA
TTTTTATTCGATTGTCTTTGTCATAGAACATTATATCCGACCATTTTTTT
TTTAATATTGAATACAATGACTTGGAAATTATAAAAAACTCTTTGAAATG
AAAAGAAATTGCTTCGTATGAAATCTGTTCCGTATTTTTCGGACATACTG
TATGTATAAAAACTACTTGGATGATTTTCCATTCATAACATGAGAATCAT
GAATCATGTATTATGTAACTACTGTATATGTTTATTATAATTGTCGTATT
ATTATAATCTAGAAATTGATTTTAGACTTACGAGTGTTTGAATAGATGGT
TTTTAAGATTGACAAATATTTTTTATTGTGTTTACATGTTGTTAATATCG
TCAACATCAAA

Coding sequence (CDS) from alignment at sc0000087_pilon:181717..188627-

>MSTRG.11815.1.p1 ID=MSTRG.11815.1.p1|Name=MSTRG.11815.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2598bp|location=Sequence derived from alignment at sc0000087_pilon:181717..188627- (Clytia hemisphaerica_ch_hm2_pilon)
ATACAACTGCATCGAAAAAAGAAGAAACAGAGTTGGAAAGGAAAATTCGA
AAAGGTCTAAAGAAGATTGAAAAGCTTGACAAAATACTGACCGATAAAAT
TGAAAAGGAGAGAGAAGTAAAACGAGAGAGGTTTGCTCTTGAAAGAGATT
TCCAAACACAAATCCAAACGTTAATTCAAGAAAAAGGTTTAGAGAATATA
GTGGGTTCACAACAATTACTTTCCCTGTGTGCTGCAACTGATTTAAAACC
TAATGAAGACTGTGATGATGATTTCACAAACCAAATTTTTAGCACTCAAA
TTGACAGTCAATTTTATGAGAAACGCAACTCTTCTTCACAAAGCAACGAT
CTGAGCGAAGATGTAGAAGATGATTCAAACACTGAGAAAAAAAGCAAAAA
GGATAAAAACAAGACGGACTTTATTAGACGAAATATTCATCTAGCTTCTC
ATTTCAATGAAACTGTTGCCTTGACAGATGAAGAGAGAAAGAGACTTGAA
GAATTGCTATCTGATGATACTGATTTATTGATCGGGGAAAACCCTTTCTC
GACGCCCGCGATTAAGGACGACGGGTTTCGATTTTCTATTAACGATCAAA
AATTGATCGAAGATATCGATTTGCAATTGAAAGAATTTCTCTCAGAGGAA
GAGTATAACTCGGCTATGTTAAGTGAGAGCCAAACCACGGTTTCCAGTAT
GACGTCAACTCGTTTTGATGAAGAATTTACATCAGTTGAAGGTCTTGCGG
CATGTGGCGAGAAAGTTCTAAACGAAGGCCATGATCAGAGAAACATGGTG
CAGCGGTTAAACGCGATCGAAGAAAAACTACAACAACTTCGTTTGACTGC
AGACTCACCCACTTATGAGAAAATCGATCCAGATTTGCTGAGATCACTTT
TGAATGTTGATTCTCGAATGACTTCAGATTCTAGAAGTATTTGTGATAGT
GTTCGAACGAATTCTGAAATTTGTTTCGAAGGTGATGAGAATTGTACCGA
TGTCTCCATAGATGAATCTTACGATCCAAGAGAGAGTGTGATTTCACAGA
ACGACTGAATGTTTTCTCGGCCAAGTTCAGGGGAAAGAAGCAGACCTTCA
AGTATCACAAGAAGTATTCGTGGAAGTTTTTCCTCTGGACTCGAAGTTCT
CCCCCCAGACTTGCGTGATGTCACTACTCCACTTGAAATTGAAGTTGTTG
AACAACATGACGATACCAATGATTTTTCAGAAGTAGAGGAAGCTGTCTGC
AGATCATCTACATCCATTGCAGACAAGGAAGTGAAAAAAGATACAAATGA
TACAACTGCATCGAAAAAAGAAGAAACAGAGTTGGAAAGGAAAATTCGAA
AAGGTCTAAAGAAGATTGAAAAGCTTGACAAAATACTGACCGATAAAATT
GAAAAGGAGAGAGAAGTAAAACGAGAGAGGTTTGCTCTTGAAAGAGATTT
CCAAACACAAATCCAAACGTTAATTCAAGAAAAAGGTTTAGAGAATATAG
TGGGTTCACAACAATTACTTTCCCTGTGTGCTGCAACTGATTTAAAACCT
AATGAAGACTGTGATGATGATTTCACAAACCAAATTTTTAGCACTCAAAT
TGACAGTCAATTTTATGAGAAACGCAACTCTTCTTCACAAAGCAACGATC
TGAGCGAAGATGTAGAAGATGATTCAAACACTGAGAAAAAAAGCAAAAAG
GATAAAAACAAGACGGACTTTATTAGACGAAATATTCATCTAGCTTCTCA
TTTCAATGAAACTGTTGCCTTGACAGATGAAGAGAGAAAGAGACTTGAAG
AATTGCTATCTGATGATACTGATTTATTGATCGGGGAAAACCCTTTCTCG
ACGCCCGCGATTAAGGACGACGGGTTTCGATTTTCTATTAACGATCAAAA
ATTGATCGAAGATATCGATTTGCAATTGAAAGAATTTCTCTCAGAGGAAG
AGTATAACTCGGCTATGTTAAGTGAGAGCCAAACCACGGTTTCCAGTATG
ACGTCAACTCGTTTTGATGAAGAATTTACATCAGTTGAAGGTCTTGCGGC
ATGTGGCGAGAAAGTTCTAAACGAAGGCCATGATCAGAGAAACATGGTGC
AGCGGTTAAACGCGATCGAAGAAAAACTACAACAACTTCGTTTGACTGCA
GACTCACCCACTTATGAGAAAATCGATCCAGATTTGCTGAGATCACTTTT
GAATGTTGATTCTCGAATGACTTCAGATTCTAGAAGTATTTGTGATAGTG
TTCGAACGAATTCTGAAATTTGTTTCGAAGGTGATGAGAATTGTACCGAT
GTCTCCATAGATGAATCTTACGATCCAAGAGAGAGTGTGATTTCACAGAA
CGACTGAATGTTTTCTCGGCCAAGTTCAGGGGAAAGAAGCAGACCTTCAA
GTATCACAAGAAGTATTCGTGGAAGTTTTTCCTCTGGACTCGAAGTTCTC
CCCCCAGACTTGCGTGATGTCACTACTCCACTTGAAATTGAAGTTGTTGA
ACAACATGACGATACCAATGATTTTTCAGAAGTAGAGGAAGCTGTCTGCA
GATCATCTACATCCATTGCAGACAAGGAAGTGAAAAAAGATACAAATG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11815MSTRG.11815Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11815.1.p1.exon2MSTRG.11815.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11815.1.p1.exon1MSTRG.11815.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11815.1.p1MSTRG.11815.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000087_pilongenomesc0000087_pilon:181717..188627 -