MSTRG.1181.1.p1 (mRNA) -

Overview
NameMSTRG.1181.1.p1
Unique NameMSTRG.1181.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000005_pilon:3353640..3355461-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.1181.1.p1 ID=MSTRG.1181.1.p1|Name=MSTRG.1181.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1822bp|location=Sequence derived from alignment at sc0000005_pilon:3353640..3355461- (Clytia hemisphaerica_ch_hm2_pilon)
TTTTTTTCTCCTCGCATTGCTATCTAACTTTCATCATCAGGTAGGTCCAT
TCAGCATCTAGCTTGTTAAGCTTAATCTTGATCATGCAATTAACTTATTA
ACTTGTAAATTCCTTTCTAGTAAAATGAATGATATAGAATAATGAATGGG
GATGAATATGTTGCACTATCGCCATCAACACATATGGTTCCATGTTCTCC
TTTCTTAAGAACTTATGAAGCCTCACCAGCACCTTGTGTTCCTGATGTTG
ATCGAAATGCTACACGAAGACTTTATACCACAACTCAAGGTTTACGAAAT
TTCCTCTTCTAATAAGACAGTTTCATTATAGTCATTATAAAAAACCATGG
TCTGGTGATGTATTTTTTTAGCTTTATTATCAAATTTTCTAAATAAATAA
ATATTTTTGTTTAAATAATAGGCAAGTTGCGATTTGCAAACTTTTTGACC
AAGTTACCATATTTTCGACTCCTTGGGATTGGTTTATTTTCCAGTCACTC
TATCAAAAACTATGCAAAACAAATCTATTTACGTACGAAAGCTCTAACTG
TTAACAATAAAGAGAAAAAAAGTCTTCCAGACTGGGTTTTTTTATAATGA
CTATGGTTTCGGACATTAGACTGGATTCATTTGCAGTGGTTTTACAGATT
TATCGATGTTTGCTTTTGTGTTTACTTTTCTCTTGGAACCTCAAATGATT
ATATTTCAGATTCGCAAGGTGGAACAATTTCACCGATGAGATTTTCTCAA
CCATATTCACAAAGCTCACAAAATGATGCACAGCAGATACCAGCTACACC
TTGCATTGATCAAAAACAAAAATCAGTACAAAAGAAAATTTCCTTAGGTT
AGTAACATGTGAATGAATGATTTTTTTTATTTCAGCAATTATAACTATTT
TGCTTAATTTCCCTTTTTTTAATAAAAGAACTGCTGTTGCTGCTGTTCCC
TTCGAGGAGTTCTAATTCCTCAAATCTCTTTTTTTTTCCAGCCATGCCAA
AGTACTATTAAAGTAATCAAAAAGGCTAAACAACTACAAGTAAGGTATTG
TACCCTTGATAACTACAATATAATATGGGGCTAACATCCCATGTTTTTAA
TGGAAATTTTCCTTTTCTTATTTCAAGAACAAGTGGTTCCTTCTTGCTCG
CCTTTCATCAATTTTGATGACGAGAAGCCATCAAACTCACAACAAGCCAG
TCAAGAATCGACAACAAATGATTATCTAGACATTTCCATAACAAACAACA
ATATTGAACAAAAAGAAAATAGTGTTCCCACAGATGAGAAGCCACCTATA
ATGAATCATTGCAGGCCTCTTCAGGACTTGGAAGGACCCAAACCAGCTAA
ACGACAAGTCAGAATGATGACAAAAAGTACTGAAATTAAACCAATTGATT
TTTTAAAAAGTGATAATATTTTTGGATGAACTCCTGTTTGAATAATAGTT
TTTTTTCTCCATTTTTTAGGGATTTAAAAGGGGATTTAAAAAGGGATCAT
ATTTAGCTGTACATATTTAGATTGAAATTCTTTCTAGTGTATTTGGTAAT
ATACTTTTTAAGATTTCTACATTGAATTTAGGATGACTAGTCTGTATAAA
ATTAAGCACTGGAAATACTGACGTAGAGCAATAAATAATTCCGACAGCCC
AAATTTAAAGCACCTGATTTAAAAAAGGTAGTTTATGGAACTGTAAATGC
TTTATCAAATATCTCAGAAATAGGTTTTTATGAGAGATTTTCATACGCTT
GCAGGCTTTCTCTCCTACTTAGTTCCAAAAGATTTAGATTTTTCTGTATT
TGATATTTTTCAGGAATAGTTG

Coding sequence (CDS) from alignment at sc0000005_pilon:3353640..3355461-

>MSTRG.1181.1.p1 ID=MSTRG.1181.1.p1|Name=MSTRG.1181.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1764bp|location=Sequence derived from alignment at sc0000005_pilon:3353640..3355461- (Clytia hemisphaerica_ch_hm2_pilon)
AACAAGTGGTTCCTTCTTGCTCGCCTTTCATCAATTTTGATGACGAGAAG
CCATCAAACTCACAACAAGCCAGTCAAGAATCGACAACAAATGATTATCT
AGACATTTCCATAACAAACAACAATATTGAACAAAAAGAAAATAGTGTTC
CCACAGATGAGAAGCCACCTATAATGAATCATTGCAGGCCTCTTCAGGAC
TTGGAAGGACCCAAACCAGCTAAACGACAAGTCAGAATGATGACAAAAAG
TACTGAAATTAAACCAATTGATTTTTTAAAAAGTGATAATATTTTTGGAT
GAATTCGCAAGGTGGAACAATTTCACCGATGAGATTTTCTCAACCATATT
CACAAAGCTCACAAAATGATGCACAGCAGATACCAGCTACACCTTGCATT
GATCAAAAACAAAAATCAGTACAAAAGAAAATTTCCTTAGATGAATGGGG
ATGAATATGTTGCACTATCGCCATCAACACATATGGTTCCATGTTCTCCT
TTCTTAAGAACTTATGAAGCCTCACCAGCACCTTGTGTTCCTGATGTTGA
TCGAAATGCTACACGAAGACTTTATACCACAACTCAAGAACAAGTGGTTC
CTTCTTGCTCGCCTTTCATCAATTTTGATGACGAGAAGCCATCAAACTCA
CAACAAGCCAGTCAAGAATCGACAACAAATGATTATCTAGACATTTCCAT
AACAAACAACAATATTGAACAAAAAGAAAATAGTGTTCCCACAGATGAGA
AGCCACCTATAATGAATCATTGCAGGCCTCTTCAGGACTTGGAAGGACCC
AAACCAGCTAAACGACAAGTCAGAATGATGACAAAAAGTACTGAAATTAA
ACCAATTGATTTTTTAAAAAGTGATAATATTTTTGGATGAATTCGCAAGG
TGGAACAATTTCACCGATGAGATTTTCTCAACCATATTCACAAAGCTCAC
AAAATGATGCACAGCAGATACCAGCTACACCTTGCATTGATCAAAAACAA
AAATCAGTACAAAAGAAAATTTCCTTAGATGAATGGGGATGAATATGTTG
CACTATCGCCATCAACACATATGGTTCCATGTTCTCCTTTCTTAAGAACT
TATGAAGCCTCACCAGCACCTTGTGTTCCTGATGTTGATCGAAATGCTAC
ACGAAGACTTTATACCACAACTCAAGAACAAGTGGTTCCTTCTTGCTCGC
CTTTCATCAATTTTGATGACGAGAAGCCATCAAACTCACAACAAGCCAGT
CAAGAATCGACAACAAATGATTATCTAGACATTTCCATAACAAACAACAA
TATTGAACAAAAAGAAAATAGTGTTCCCACAGATGAGAAGCCACCTATAA
TGAATCATTGCAGGCCTCTTCAGGACTTGGAAGGACCCAAACCAGCTAAA
CGACAAGTCAGAATGATGACAAAAAGTACTGAAATTAAACCAATTGATTT
TTTAAAAAGTGATAATATTTTTGGATGAATTCGCAAGGTGGAACAATTTC
ACCGATGAGATTTTCTCAACCATATTCACAAAGCTCACAAAATGATGCAC
AGCAGATACCAGCTACACCTTGCATTGATCAAAAACAAAAATCAGTACAA
AAGAAAATTTCCTTAGATGAATGGGGATGAATATGTTGCACTATCGCCAT
CAACACATATGGTTCCATGTTCTCCTTTCTTAAGAACTTATGAAGCCTCA
CCAGCACCTTGTGTTCCTGATGTTGATCGAAATGCTACACGAAGACTTTA
TACCACAACTCAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.1181MSTRG.1181Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1181.1.p1MSTRG.1181.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.1181.1.p1.exon3MSTRG.1181.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1181.1.p1.exon2MSTRG.1181.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.1181.1.p1.exon1MSTRG.1181.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000005_pilongenomesc0000005_pilon:3353640..3355461 -