MSTRG.11798.1.p1 (mRNA) -

Overview


Name	MSTRG.11798.1.p1
Unique Name	MSTRG.11798.1.p1
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000086_pilon:1225665..1228289-
coding sequence from alignment at sc0000086_pilon:1225665..1228289-

mRNA from alignment at sc0000086_pilon:1225665..1228289-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>MSTRG.11798.1.p1 ID=MSTRG.11798.1.p1|Name=MSTRG.11798.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2625bp|location=Sequence derived from alignment at sc0000086_pilon:1225665..1228289- (Clytia hemisphaerica_ch_hm2_pilon)
GTTCTATGTTGTTTGTATTTGACTTGTTTTATCATTTTGAATTTTTTTTT
GTATCCTACCCACAAGTGAACCACAAAACCAGCATTGCAACATTTAAAAC
GAAACTTCCTTTATGGGAGAATCAGGAGAATGGGACCTTCCTGCCCTTCC
TGCCTCCTCTCCCGCCCAGACTATCATATCTGTTATATACGTCACAAGGC
GTCTTTTTGTCTGAACAAAAGGCAGCAAAACTCCGAGCAGAACATCATAT
TTTCCAACATGGCGGACGACGAAGTTGCATCAAACAGCGAAGTGTTCGAC
GATGTCGATTCAGATCCTGGATCAATCATAAACAATGTAGTTGAATCATG
CAGTAAAATTTTAATCCCTTCCATGGCTCAACCTTCCATGAACAGGCCAC
ACAATGAAGAAGAAGTAAATACGACTGACGCCATTTTTCATACGGATCAC
GATGATGAAGGGATCAACACTAAAAGTGACGAAGAATCGTCGCTGGAAGA
TCAAAACACCGACGATGTGGTAAACAACATTAAGCGTGGAAGTCCTCTTC
TCGAAGATAAACAAAGGATCAGTGGTCACAGTCCAAGAGTTGTAAGATGG
ACACTAGATACTATGGCAGCTGCGATGGATGCAGTTTTTGCAGGGGAGAT
GACCACAACAAATGCATCAAGAAAATTTGGAATCCCCAGAACCACCCTCC
TTGATAGGCTTTCAATGAAAGTTAAGAGGCAACATTTAGACTGTCCAGGT
TCTTTCCCTCTTAATGCTGATAATGATGCAAAAGTTGTTGATTTTATTCT
TGCTAATCAAAATCTTGATAAACAAACTTTAATCAAGGGGCTTTTAAGCC
TTGGAGAGGAATTAGCTAGTATGCAGGGAAGACCTTTCAATGGGCCATTA
AACTCCAGGAAATGGTTGAAATTGTTTGTTCAAAAGCATCCAAATTTGAA
TGTTTTTTCTTACAGCCGATCTAGAGCACCAAGCTCACGCTCAGTTTCTT
TTTCTGGCACTAGCTCCCATGCTCGACTTCAATCGTCATCTATTTCTAAT
GATAATACAGTGCTTATTCCTCAGCAAATATTACACATCCAGCATGATCC
TTTAGCACAATTGCAATCTGAACATGGCACAGAACAAGATTCTCCAACTC
TTCCAGATAACGATAATGTGTTTGATTCTTTGGAGTCATCCTTAGCAAAG
CAAGGCGTTCGAGCTATAGAACAAAAACTGGGAGCTGAACAATTGTCATA
TTTCAATTATAGATACATGAACAAAAATTTAGAGAGGGGATATGAGTTAT
GGAAATTATGCAAAATCAAAACAGATGCAGGTGATAACCTCTCAACTTTT
GCATTGAGTGGGGTAGAGGAAGGTTTAGTGGAAGAGCATTTGAAGTATTT
CAGATTTCGATATGACAATACAGAACTTGAGGAGGGCTATAAACTTTGGG
CTGTTCTGAGAGAGAAAATGCATGAATGAACTAAGATATCCTGTGTTCGT
TTTAATATTGAATTAACTAATTACTTTATATACTTCAGTATAATTTTTTT
GCATGTTGGTTGTAAAATACGCATTATCAGTGCCTCTTAGATGGCGTTAA
ACATCTTGAAAGTGTTCTTTTCATCTTTTCAAATTTCCCTTGGGGATTTT
CAGGGATGACAACCAAATCCACTAAATCCGCGAAATTTGATTCCTTTGTC
TTTTGCAACACAAATGTTACCTACTGTAGGGACAATATAATTTATCCTGT
TTTTATTGACTGAGTAGTAATGTTTGATTAATCTGTTATTCAATAGATCA
TTGCGTTCTCCCAAACAAATACTGGCTCATAACTTGTTTTTGTACATATT
TTTAATCAAATTTCCCTTACTTTGTTAGATTTACAGATTTAGTTTGTTGT
ATATACTATCTATATACCTTGCATCATAAAAATTATACTGTTTTCTAATG
TCAACATTAGACCAAGTTATGGTATACTATTTTTCGCTAATTATTGAAGT
AGTGGAATTGGATTAGGAACCATTCAAAACGTACATAAGTTCAAATATAA
GCAAAATTTGATACTCCCTCTGTGTATGTACGCTTTTCTGAAAACCCCCT
CCTCTAAGAAAATGTTTTATAATTATAGCTGGATAACAAATATGGGTAAC
ACAAGTAAGCTGGGTTACGAATATCAAATAGAAGGTTACAAAAAAACTAG
AAATCAAAACAGTTTGAAAAATTTGCAAAGAGTAATTGACCTCTCCCCCA
CTAACCCTTTTCTACACTTTTCGAGAGAGCTCCCTTCCCCTCTTAGAGCT
TACATAAAGTACTTTTTGAATGGTCCCTTAAACTCTGTGTGGATCAATTT
TCCTGACTTCTGTTTTTGCAAAGAAGAAAAAAGAAAGCCCAAAAACTCAA
GGGGTGGTGCATTCTTAACTTGAAAAACATTGAAACTTTAAATGTATTGA
GACTAGGATAAACTTTTAACCAAAACAATTTTGTAATATATGAATGAGAC
AATTTGAAATTCTTGATTTATTGTTGTTTCATGGTGAAATGAAATATAAG
AAATATTAGAGTGGAATGTTGCCTAGACCTCTTACTTTTCTTGAAAACTT
TTTTTGATACACCGATCAACCCTTA

Coding sequence (CDS) from alignment at sc0000086_pilon:1225665..1228289-

>MSTRG.11798.1.p1 ID=MSTRG.11798.1.p1|Name=MSTRG.11798.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1350bp|location=Sequence derived from alignment at sc0000086_pilon:1225665..1228289- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGACCTTCCTGCCCTTCCTGCCTCCTCTCCCGCCCAGACTATCATAT
CTGTTATATACGTCACAAGGCGTCTTTTTGTCTGAACAAAAGGCAGCAAA
ACTCCGAGCAGAACATCATATTTTCCAACATGGCGGACGACGAAGTTGCA
TCAAACAGCGAAGTGTTCGACGATGTCGATTCAGATCCTGGATCAATCAT
AAACAATGTAGTTGAATCATGCAGTAAAATTTTAATCCCTTCCATGGCTC
AACCTTCCATGAACAGGCCACACAATGAAGAAGAAGTAAATACGACTGAC
GCCATTTTTCATACGGATCACGATGATGAAGGGATCAACACTAAAAGTGA
CGAAGAATCGTCGCTGGAAGATCAAAACACCGACGATGTGGTAAACAACA
TTAAGCGTGGAAGTCCTCTTCTCGAAGATAAACAAAGGATCAGTGGTCAC
AGTCCAAGAGTTGTAAGATGGACACTAGATACTATGGCAGCTGCGATGGA
TGCAGTTTTTGCAGGGGAGATGACCACAACAAATGCATCAAGAAAATTTG
GAATCCCCAGAACCACCCTCCTTGATAGGCTTTCAATGAAAGTTAAGAGG
CAACATTTAGACTGTCCAGGTTCTTTCCCTCTTAATGCTGATAATGATGC
AAAAGTTGTTGATTTTATTCTTGCTAATCAAAATCTTGATAAACAAACTT
TAATCAAGGGGCTTTTAAGCCTTGGAGAGGAATTAGCTAGTATGCAGGGA
AGACCTTTCAATGGGCCATTAAACTCCAGGAAATGGTTGAAATTGTTTGT
TCAAAAGCATCCAAATTTGAATGTTTTTTCTTACAGCCGATCTAGAGCAC
CAAGCTCACGCTCAGTTTCTTTTTCTGGCACTAGCTCCCATGCTCGACTT
CAATCGTCATCTATTTCTAATGATAATACAGTGCTTATTCCTCAGCAAAT
ATTACACATCCAGCATGATCCTTTAGCACAATTGCAATCTGAACATGGCA
CAGAACAAGATTCTCCAACTCTTCCAGATAACGATAATGTGTTTGATTCT
TTGGAGTCATCCTTAGCAAAGCAAGGCGTTCGAGCTATAGAACAAAAACT
GGGAGCTGAACAATTGTCATATTTCAATTATAGATACATGAACAAAAATT
TAGAGAGGGGATATGAGTTATGGAAATTATGCAAAATCAAAACAGATGCA
GGTGATAACCTCTCAACTTTTGCATTGAGTGGGGTAGAGGAAGGTTTAGT
GGAAGAGCATTTGAAGTATTTCAGATTTCGATATGACAATACAGAACTTG
AGGAGGGCTATAAACTTTGGGCTGTTCTGAGAGAGAAAATGCATGAATGA

Gene-mRNA-Prot

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
MSTRG.11798	MSTRG.11798	Clytia hemisphaerica_ch_hm2_pilon	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.11798.1.p1.exon1	MSTRG.11798.1.p1.exon1	Clytia hemisphaerica_ch_hm2_pilon	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
MSTRG.11798.1.p1	MSTRG.11798.1.p1-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000086_pilon	genome	sc0000086_pilon:1225665..1228289 -

You are here

MSTRG.11798.1.p1 (mRNA) -