MSTRG.11785.2.p1 (mRNA) -

Overview
NameMSTRG.11785.2.p1
Unique NameMSTRG.11785.2.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000086_pilon:975932..978164-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11785.2.p1 ID=MSTRG.11785.2.p1|Name=MSTRG.11785.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2233bp|location=Sequence derived from alignment at sc0000086_pilon:975932..978164- (Clytia hemisphaerica_ch_hm2_pilon)
CCGATAAATCTGTTTTCAGGGGATAACAAAACAATAATTCAAAATGGCGA
TGATTGCAGGTGATTTCAAGAGCTTCCTAACTATCAAAATCAAGCAGCGA
GATGACAATTTATTTGATCAATATTCCCGAATCTTTATGGTGAAAGTCCT
GTTGATCACATCAATGGTTTGTGGAATCTCTTGGTATAGTGACAAATTCA
ATTGCATCATACCTGGTAAGAGCAAAACTTAATATTTATACGCAGACACC
CCTTGCTCACAGCCCTAGTGGAAGGTTTTCTTACAGTGAAATAAGTATTT
CTTTCGAAATTCAATAGCTCAAAAATTGTAGGAGTGGTTTTGGAGTGCAT
TGAATTTCAATGAAAATAGAGAGCTAATTTATCAGTGAAATGGTAGGGTA
TTTTTCTAACCGGACACAAAGTTTTGACCAACTTTTAGACAGGGGTTCAA
CCAGGATTTTATTTGATTGTTATGCATGTGGACTTTCGGATAGTTAGTGG
TAAGTACGTAAGCTCAAAATTAGGGGAAAACATCCGGGCTATTTTGGGTA
CTTCCGTATAGAAATATATTGCGTAATATCACGAGTTATAAACTTTTAAA
TTTTCACAGTGAAGTATCTATCCAAATATCATGGGTAATGCTTTAACTTT
TAACTACAGTTCTCGCTCTCTAATTCGATCTTTAATTGGAATTGGATTCT
CATCGAATAAGGGAGCGACATTTTTGAGACTTTCTTATTGACGATGGCTT
TCATTTATCAAATAGTGAAGCCTATCGAATAGTAGAACGTCGAATTAGAG
AGCTTCAACTGTATTCTTACTTTCTAGAAAAAATGATGGTTTCGGAAGAC
TTTCCAGCATTCGTCGGTGCAACATGCTGGATCCAAGGTGTTTATATCTA
CAAAGAACTTTACGGTCGGAATGACGACGTTGCATATTTTGGTATCACAA
AAGATATTGATACAGATGGAATGTATAATGGTGAATTATGTAAAACGGAG
AAAAAGTTGAATAAAGATTCGAACGAATACTGTGAACCAATGGAAAAGAC
ATTCTATCAACAGGTAAGAATATGAGTGACTCACGCAAAAAGAGTTAAAG
CTTTTGAAAAGCTTCACTTTGTTCGTATTTTAGTGGAGTGAAAAAGACTT
ATTACTTCGTACTTTATATTTGGTTCAGTGGCTTAAATACCGAGCTTTCA
AAGTTGAATTTCCTTTTGAAAATGTCCGAAGAAAAACCTGAATTCTGAGG
AACTACTTATCTCAAATCTCAGGCTCTTAGATTCCAGTATTTCAGTACGG
TACATACATACCCTTCCTTCTTGGTGCAATCATAGTATAAGAAAGCCGCG
GCTGGAATATGTACCGCATTGTCTTTTCAGTTAATTGCTGTTCCATCTCT
GTCTCCGAGCTTTATAAGAACATCAAGATGCTCAGTTTATCATTGGTAGA
TAGTTTTTGAAATTTTTCTCTTATTTTCCTTCACAAAAAGTTTTTTTGTT
GCTAGATATCTTTGAATCTGTACCCAATAGAACACTTGAACTAATTTTGG
ACATATTTTAGGGGTATTTTGTGGAAACAATAGTTTTTCGCTAAAATTGA
AATCATAAGAACTATATTCAAGATGACAACTTTCCTGTCAGTTTAAATGA
TAAATTTTGAAGGTGCTGGCTTGAAATTTTCACAGTATTATCTTGATGTA
CTTTTTCATTGATTTCTAAAAAGATTTTACTGAAATATTGCGAAGGCATT
TCGAGGCACCTCATTAATTTTTGAGTTCTTTCAGCCCAGCCATTTTGTGC
TTGTTTAAATTTCTTAGTGTTGATTTTTCCTTTACAATGATTTTATAATG
CAAGAGCATATCATTAATTTCTAAAACGCACTGAGAAGTAAGTATTAACG
ACAAACCAATAAAATATACCATTAAAGATGCTACATTACTGATTTCTTGA
TCAACAAATAGTCATCAAATACGACAGAGATAGAACAAGAGAAGTTCAGA
TGTTATCATTCCAGCCGCGGCTTTCTTATACTATGGTGCAATGTCTCTCA
TGCTATATACCGTACAAATAAAGAATCAAATGCTGCCTCCAACTTAAAAT
AAAAAGTTGAGTTTGTTGTCGTTATTGTATGCCCAAAATTACAATTTCAT
AATAATTCTACAACTTCAGTACCAATACATGCCGTTCCTTCTTGGTGCAA
TGGCTCTCATCTATGTATAGCGCCAAATATGAA

Coding sequence (CDS) from alignment at sc0000086_pilon:975932..978164-

>MSTRG.11785.2.p1 ID=MSTRG.11785.2.p1|Name=MSTRG.11785.2.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1377bp|location=Sequence derived from alignment at sc0000086_pilon:975932..978164- (Clytia hemisphaerica_ch_hm2_pilon)
TACCAATACATGCCGTTCCTTCTTGGTGCAATGGCTCTCATCTATGTATA
GAAAAAATGATGGTTTCGGAAGACTTTCCAGCATTCGTCGGTGCAACATG
CTGGATCCAAGGTGTTTATATCTACAAAGAACTTTACGGTCGGAATGACG
ACGTTGCATATTTTGGTATCACAAAAGATATTGATACAGATGGAATGTAT
AATGGTGAATTATGTAAAACGGAGAAAAAGTTGAATAAAGATTCGAACGA
ATACTGTGAACCAATGGAAAAGACATTCTATCAACAGATGGCGATGATTG
CAGGTGATTTCAAGAGCTTCCTAACTATCAAAATCAAGCAGCGAGATGAC
AATTTATTTGATCAATATTCCCGAATCTTTATGGTGAAAGTCCTGTTGAT
CACATCAATGGTTTGTGGAATCTCTTGGTATAGTGACAAATTCAATTGCA
TCATACCTGTACCAATACATGCCGTTCCTTCTTGGTGCAATGGCTCTCAT
CTATGTATAGAAAAAATGATGGTTTCGGAAGACTTTCCAGCATTCGTCGG
TGCAACATGCTGGATCCAAGGTGTTTATATCTACAAAGAACTTTACGGTC
GGAATGACGACGTTGCATATTTTGGTATCACAAAAGATATTGATACAGAT
GGAATGTATAATGGTGAATTATGTAAAACGGAGAAAAAGTTGAATAAAGA
TTCGAACGAATACTGTGAACCAATGGAAAAGACATTCTATCAACAGATGG
CGATGATTGCAGGTGATTTCAAGAGCTTCCTAACTATCAAAATCAAGCAG
CGAGATGACAATTTATTTGATCAATATTCCCGAATCTTTATGGTGAAAGT
CCTGTTGATCACATCAATGGTTTGTGGAATCTCTTGGTATAGTGACAAAT
TCAATTGCATCATACCTGTACCAATACATGCCGTTCCTTCTTGGTGCAAT
GGCTCTCATCTATGTATAGAAAAAATGATGGTTTCGGAAGACTTTCCAGC
ATTCGTCGGTGCAACATGCTGGATCCAAGGTGTTTATATCTACAAAGAAC
TTTACGGTCGGAATGACGACGTTGCATATTTTGGTATCACAAAAGATATT
GATACAGATGGAATGTATAATGGTGAATTATGTAAAACGGAGAAAAAGTT
GAATAAAGATTCGAACGAATACTGTGAACCAATGGAAAAGACATTCTATC
AACAGATGGCGATGATTGCAGGTGATTTCAAGAGCTTCCTAACTATCAAA
ATCAAGCAGCGAGATGACAATTTATTTGATCAATATTCCCGAATCTTTAT
GGTGAAAGTCCTGTTGATCACATCAATGGTTTGTGGAATCTCTTGGTATA
GTGACAAATTCAATTGCATCATACCTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11785MSTRG.11785Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11785.2.p1MSTRG.11785.2.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11785.2.p1.exon3MSTRG.11785.2.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11785.2.p1.exon2MSTRG.11785.2.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11785.2.p1.exon1MSTRG.11785.2.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086_pilongenomesc0000086_pilon:975932..978164 -