MSTRG.11781.1.p1 (mRNA) -

Overview
NameMSTRG.11781.1.p1
Unique NameMSTRG.11781.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000086_pilon:931295..936055+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11781.1.p1 ID=MSTRG.11781.1.p1|Name=MSTRG.11781.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4761bp|location=Sequence derived from alignment at sc0000086_pilon:931295..936055+ (Clytia hemisphaerica_ch_hm2_pilon)
tttcagtttattttaaaaagatgtgAAAATTAGAAATGAAATAATGAGTA
CAACTCCAAAATCAAAGACTCTCAGAAGAAGTTTATCGACACCTTATCAA
AAAGGGTAATTTATTTCACATTTACCAGTGATAACATTtttcgtacacgt
tttttttataagaacatccaaagtttttgaagccttcagatgctcttaac
tttttgagttttaagtctaaaaatgttaacattttcttattttcgctaat
ttttgagtatttttgtccattttcctaagaaattgggtctgcgaagcctt
aaaatgttcttgacttgttcttaatattttggccatcgaagctttatgtt
cttatatagtttgttcttataaaaaacgcgtaTTGCTTACAGTAATATTG
ACAGTTAAATTTTCATGTAGGCCAAGTTTGCAAAATTACATTTGAACTCC
TCATGGATTATTAGAAAGCAGTAATGCATCGCATAATCATTCATGCACTC
ATAGTGTACCATGCGGTAGTTTTGGTCatcgtcatctgagcaggaTGCGA
GAGTGCATTGGTTTTGCTTAGCTTCTTCGGATGgttgtttttgttggttt
ttgtcgatattttcgtttctccttttgttAGAAAATCAACCATTTTCGAG
GAGCTGCACAAATTGCAATAATCATTGTTATGTTCTTCTTTATTTTACAG
GCGAAGAAGTAGTTCAGGATGTTTCGCACCCTTTAAATCACCTGCTGCAT
CTTCAAATACAAAAAATGATTCTGTCACCAATGTAAGTCCacttttatct
attttttgaACCTGTCCGTTCGTTTCttacaagcttttctcaggatcggc
tcattagttaattttttgattttttgtacagtgatgcaaaatggtgattc
ccaaaaagtgacggggcccgattttcgaaaaaatttttgggcaaatttgg
gccaaaaagtgcctaaaaatggggttttgaAACGAacgtgaaattgcttc
attagtcttttctgattttatgcATGAAGATGGAGGACAAGGTTCTCTAA
AACctggctgaaaaagtttttttcggaaaattatttttggccgtaaaaat
cggattttatTATTTGGGGaattcccttatgtcatttttagagaaaaaag
tttatttcttgCGATtagattaatatttttttctgatttttaacactttg
atgtaaaatggtaatatttaaaatctgagcccaattttcgaaaaataata
tttttgggcaaatttggtcCAAAATGTGCctaagttttttctgatttttt
ggacaaagatagAAAGCAagtttctctaaaaagtggctcaagcctttttt
tctggaaacttttttttggtcgtaaaaatcagattttcttaatttgggaa
attcccttttgtcatatttagggaaaatgagcatttctcgtgattggctt
ggtattttctcttatttttggcatagtgatataaaatggtgatacagtgg
aacctctaattagcggacaccatcggggaaaggggttagtgtccgctaat
tagaagtgtccgccttttagaaacttttgatctcggagctccaattttga
aattaagccatcccagggtgtcaaaaatacaaaatttgggTCTAAAgcac
ttatctgcagacactaggccatagaagaacaagagaagGGTTATTAAAAC
AGAGCTCGAGTGCCTGGCAAGAGATTAAATCGAGGTGGTGGGTACGGACT
TGATTGAAGTACCactgatttatgatttctttggcccacctaagttcgtt
gaatgggtcaagggaaaactggaaatttgtagaaataatttgaataataa
gactaataagtgcttgaaacaTTTTAATACGATTTTGGACGtatgtgacc
cgtttgatattcaatgtccgctaattggagagctaaaataggggttttgg
ccatttcgtgcgaaaaaatttgtccgctaatcagagggtccgctaattga
gtgtccgccttttagaaacttttttatgaggatttgactaggaaacggcc
ggggaaaatgaaattgtccgctaatcagaggtgtccgccttttagagtgt
ccgttaattagaggttttactgtatttcatttctgatggagcccgatttt
cgaaaaaataattctttgggtaaatttgggccaatgCCTAACATGGGTTT
TTTCGGACTTTGGGGGAAAATCACCTTTTATCGTCAATTTGGAAATcaca
ataaaatatttattcactcCAGTATCTACGATTATAAGTCATACCACTTT
AATACTTCACAGGTCGATATTAATAtgagctgtgatactcatggtaatct
attcaagctgctcactacactttcttactctcttgtcttgctatttgtcc
tatttttatctgattttgatcaacaggtaggtccattcagcatgttgctt
atTTGTTTTAATAATCGTCCAATCGTCAAATAGGTGCAATTAGCAGCTTG
CTTgtttatttgtcatttttctgtttaaaaaagAGTGAGTGGTCCTCGGA
TATTCAAGTACTGtgcacagatttctgtaaagacCGAAGGGCCAGATAGA
GTGCTTTGGTTGAAAAGTTTGCCTTGGTTCGATAGGAagtcctacctagg
tcacgtgatatTAATAGAATTTtagtgcttgaccaatcagaagcttcgtg
AGTTTACGAAAACGATAGCAGcgatattttttgcgatatttacttttttt
tgcttggaaaagcctAAAATCACGCAATCTAATCATTCGGGCTTTACCAA
AATTTGTGGTACTGTGGTGAATCTCAAGgttttgaattatatttttttgc
ttgcgtATCCTAAAGAAAATCCAAATTCTACATGATAGAACGACCATTCA
TCTAACGAGTCTTATTCGTTTAAGTTTACGCTGTGTCTTTACTGCTGCTC
AGGTTAAAGATAACTTGATTACATTTATTTCATAAGTTTCCAACTATCAC
TTTAGAAAGAAGAGACATCTGAGAAAGTAAAACAACAGATCCCATGTAAA
TTAAACACGCAACAACCTGACGATAAAGTGACGTTAGCAAACGAAGTTGT
TCAAATGCACCAAAAATGTCAACAACTCGATCAAGAAATTGAGGAGTTGA
GGAAAAGGTATACCACTTTATCGACctacttttttattgaaaaccttCCA
AGTTTCAAAAAGACTTCTTTTGAAGCGAAAAATCCTTTCAAGAGACTTTG
GCTAAGTGCCGATGGGCAGGAGCGAAtaatcttttttaaagatttccagT
TTCACGGTCAGTCCATTGTGGTTGAATTTGGTCTATAACAGTAAAGAATA
TGTTCTTTAGCCTTATATCGAACAAAGGAAATGTGATTGAAGGAAAACTG
AAAATAGTCGCGTCGTTGTTTCTTCTTGAAGTTAATTTCCTTATCTCAAA
GAAGAATTTCTATCAAAAGATTCGATCATTTCAACTCTGATGAAAGAGTT
ATGAATAATCTCAAATGAGTTTCTTTTGAGATCGGCTATAGAACCGATAA
TTGAATTCTAAACTTAATATCTGATATGGTCAACTTGGACATTTTAAAAC
AAGCGCTTAAAGAAAGTCAAAATTCGGCACGCATATTCTACACATATTAG
CCAATTCATGTTCgcgtaaaactaaaaaaagacgAGACTATTAATATTTT
GACCGATGATAGGCTAAGGCTAGTTTGTACATATCCCTGATTGTATTACA
TCTATTACATCAAGTCATCTGATTTGGCTTCTTTTTCTTTAGTTACGACG
AAGACGAGTTACCGATGTACGTCGATAAATTACACCAATACAATGAGATC
AAAGATGTCGCCCAAATGCTCATCGGAAAAATCGGtaaaaaaaagttcat
tttcacTTGATGTAATAcagtaaaaatgaaagattaTGCCAACTCTTTGA
CCACATCCCTCCTAGTATTTtggctttttaaattttattactgACCGTTT
CAGTTAATATGTATAATCATCAGTAAAGTGATAATACCCAGGATACACCG
GGGGCAAGGTTAACCAACTCCTATCTTGCTCGTGACAAGGCTTTTACTAA
GAATGACCACATCAACAATACTTTAGCAACAAATTTCTTTACTGGGCCTG
TTTAAGGGTGATAGTAAGAAATCAAAAAGGTTTTTCAGTATGTGCGAAAA
TTAAGGGCCTTAATTGAACGACATCTTCAAAACGAGTAAGTTGTTGGCCT
ACTTATCTTTTCATCACTCTAAACggtttgatttttcatttctgaTTTAT
CTTTCAGCGGAAAAAGAGAGAACGACTACCAAGAGGCTGTATGAGAGATT
TGGATTAGACTTGGACGATTGAAAGCTTTACATGATTTTCTAAGCGAATG
GAATTGTGACGTTTATTGCGTTGTGAAATATTGTTGAAACAGTTGGAGAG
ATCATTTTACCAAGGGTCATACCAAATGGACGCTGTTcactttcttttga
aaagataccgtattacttcgaatagaCACCTCGGGCATTTAATAAATGCT
TTATGGATTTTAGAAGGGACGTTCcaaagaaatttaagaaaatatttata
acTAAACTCACTTTGAAAAAGTGAAGGGGAACCTTACCTCGCCTTTCCAT
TATTATTTTTGTACAAATATGTCATTTTAGGACTAAGGGATGCAGAAACG
GGTCAAAATCAGTTCGAATGCTAAGAGAATACAATTATCATCCTATATCT
AAGTTTTTCTT

Coding sequence (CDS) from alignment at sc0000086_pilon:931295..936055+

>MSTRG.11781.1.p1 ID=MSTRG.11781.1.p1|Name=MSTRG.11781.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2265bp|location=Sequence derived from alignment at sc0000086_pilon:931295..936055+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGTACAACTCCAAAATCAAAGACTCTCAGAAGAAGTTTATCGACACC
TTATCAAAAAGGGCGAAGAAGTAGTTCAGGATGTTTCGCACCCTTTAAAT
CACCTGCTGCATCTTCAAATACAAAAAATGATTCTGTCACCAATAAAGAA
GAGACATCTGAGAAAGTAAAACAACAGATCCCATGTAAATTAAACACGCA
ACAACCTGACGATAAAGTGACGTTAGCAAACGAAGTTGTTCAAATGCACC
AAAAATGTCAACAACTCGATCAAGAAATTGAGGAGTTGAGGAAAAGTTAC
GACGAAGACGAGTTACCGATGTACGTCGATAAATTACACCAATACAATGA
GATCAAAGATGTCGCCCAAATGCTCATCGGAAAAATCGCGGAAAAAGAGA
GAACGACTACCAAGAGGCTGTATGAGAGATTTGGATTAGACTTGGACGAT
TGAATGAGTACAACTCCAAAATCAAAGACTCTCAGAAGAAGTTTATCGAC
ACCTTATCAAAAAGGGCGAAGAAGTAGTTCAGGATGTTTCGCACCCTTTA
AATCACCTGCTGCATCTTCAAATACAAAAAATGATTCTGTCACCAATAAA
GAAGAGACATCTGAGAAAGTAAAACAACAGATCCCATGTAAATTAAACAC
GCAACAACCTGACGATAAAGTGACGTTAGCAAACGAAGTTGTTCAAATGC
ACCAAAAATGTCAACAACTCGATCAAGAAATTGAGGAGTTGAGGAAAAGT
TACGACGAAGACGAGTTACCGATGTACGTCGATAAATTACACCAATACAA
TGAGATCAAAGATGTCGCCCAAATGCTCATCGGAAAAATCGCGGAAAAAG
AGAGAACGACTACCAAGAGGCTGTATGAGAGATTTGGATTAGACTTGGAC
GATTGAATGAGTACAACTCCAAAATCAAAGACTCTCAGAAGAAGTTTATC
GACACCTTATCAAAAAGGGCGAAGAAGTAGTTCAGGATGTTTCGCACCCT
TTAAATCACCTGCTGCATCTTCAAATACAAAAAATGATTCTGTCACCAAT
AAAGAAGAGACATCTGAGAAAGTAAAACAACAGATCCCATGTAAATTAAA
CACGCAACAACCTGACGATAAAGTGACGTTAGCAAACGAAGTTGTTCAAA
TGCACCAAAAATGTCAACAACTCGATCAAGAAATTGAGGAGTTGAGGAAA
AGTTACGACGAAGACGAGTTACCGATGTACGTCGATAAATTACACCAATA
CAATGAGATCAAAGATGTCGCCCAAATGCTCATCGGAAAAATCGCGGAAA
AAGAGAGAACGACTACCAAGAGGCTGTATGAGAGATTTGGATTAGACTTG
GACGATTGAATGAGTACAACTCCAAAATCAAAGACTCTCAGAAGAAGTTT
ATCGACACCTTATCAAAAAGGGCGAAGAAGTAGTTCAGGATGTTTCGCAC
CCTTTAAATCACCTGCTGCATCTTCAAATACAAAAAATGATTCTGTCACC
AATAAAGAAGAGACATCTGAGAAAGTAAAACAACAGATCCCATGTAAATT
AAACACGCAACAACCTGACGATAAAGTGACGTTAGCAAACGAAGTTGTTC
AAATGCACCAAAAATGTCAACAACTCGATCAAGAAATTGAGGAGTTGAGG
AAAAGTTACGACGAAGACGAGTTACCGATGTACGTCGATAAATTACACCA
ATACAATGAGATCAAAGATGTCGCCCAAATGCTCATCGGAAAAATCGCGG
AAAAAGAGAGAACGACTACCAAGAGGCTGTATGAGAGATTTGGATTAGAC
TTGGACGATTGAATGAGTACAACTCCAAAATCAAAGACTCTCAGAAGAAG
TTTATCGACACCTTATCAAAAAGGGCGAAGAAGTAGTTCAGGATGTTTCG
CACCCTTTAAATCACCTGCTGCATCTTCAAATACAAAAAATGATTCTGTC
ACCAATAAAGAAGAGACATCTGAGAAAGTAAAACAACAGATCCCATGTAA
ATTAAACACGCAACAACCTGACGATAAAGTGACGTTAGCAAACGAAGTTG
TTCAAATGCACCAAAAATGTCAACAACTCGATCAAGAAATTGAGGAGTTG
AGGAAAAGTTACGACGAAGACGAGTTACCGATGTACGTCGATAAATTACA
CCAATACAATGAGATCAAAGATGTCGCCCAAATGCTCATCGGAAAAATCG
CGGAAAAAGAGAGAACGACTACCAAGAGGCTGTATGAGAGATTTGGATTA
GACTTGGACGATTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11781MSTRG.11781Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11781.1.p1MSTRG.11781.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11781.1.p1.exon1MSTRG.11781.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11781.1.p1.exon2MSTRG.11781.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11781.1.p1.exon3MSTRG.11781.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11781.1.p1.exon4MSTRG.11781.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11781.1.p1.exon5MSTRG.11781.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086_pilongenomesc0000086_pilon:931295..936055 +