MSTRG.11764.1.p1 (mRNA) -

Overview
NameMSTRG.11764.1.p1
Unique NameMSTRG.11764.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000086_pilon:726134..730441-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11764.1.p1 ID=MSTRG.11764.1.p1|Name=MSTRG.11764.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4308bp|location=Sequence derived from alignment at sc0000086_pilon:726134..730441- (Clytia hemisphaerica_ch_hm2_pilon)
CCACAAGGGGGACGGGAGCTAACTTCGTTTAAAAATCTTTTAGTTTATAA
TTTTCGCGCAGCGGTTCATAGTAGTTATTTTATTAAGATGATTGGCTTTT
CTTATGTTTTGTTGGTTGAATGAATTTAAAAGTTCTTTTCTGGAACAACG
CAATATGCTTTGTTTGTGTCTTGTTCGTCCCATGAAAACGAAGGGAATTC
CGTCTATTTTTTAAAGGGATATTTTCCTTCTTTAAAATGTTCACCACAGT
GAACCACTAATGACGAACTTTTCTTTTTCAACATATTTTTCTTGATCCTT
TCAGACCTTATTGAAGAAGAACAAAATCAAGAATTTTTAGGGTGTTTCCT
TTTTCCTGTGAGTTTGTCCCGAGGTTATTCAAGATGGTGGAACATAGGCA
TTACGAGCAAGTATATGAAATACATAAATTGAGAAAATCAGATAAAGACA
ATGGGCATATCAGTGAAATGCCTAGATCTATGAAAATGGAGAATGAACCG
GTCTGTGAAATACACAAAAAGAGAATTGAGGATGATATATCTTCGGATGA
TGGATATTACGGATTAAGCCCTCCACCACCTTATTCAAAAGATGATTTGA
TTGGTTATGAAGACAAACGGGAAGTTGAGAGGCGAAGAAGTATTTGTTAT
TCACCCATTGAAGTTTGTCCACGAATTGAGTATAATGATGTGGGAGAAGA
AATTAATGTCACTGTAAGTCCGAAATTTTCTCTTCTTCTTCGGAATTTTT
ATTTTATGTTTTCAATTCCAATTGAATGGGTGCGGCCGTTGGATTGGATT
CAGTATAGTTTTGATATATTGATGCAGGGGGTGCGCAACAAGGAATGTTG
AACGTTTAGACGTTCATTTAACGTTGTGTATTAGGTAGATTAATGCCTAT
AAGCGGTATTTGTGTCAGTTGAGAAATTACTCTCTTTAGCCAGGCAGAAT
ATGGTACGTAAACACCCACGTGTCACAAGACATATTCTACTTCCTAAGCA
TTCAGCTTCTTTGATTTATTCCAAAGCTTGTTAAAGAATTTCCAAAGGGT
CACAGGGTTGTCCCTGAGGTGTCTTTATTCCCTATTTTGGTAATACTGTT
GTTTCGCGATAAGGTTCGACCATGACACAAGCCTCATACTGATCTTACAG
ACGTGTGATTCTCAATTTCACAATAATAACAAAAAGTAATAAGTTAGGGC
TAAGTATTTCAAAAGGCTGTCCCTCTATTCAACTCCTTTAATCTTTAAGC
CTGTAGATTATCTCTTATCACCACACGCTAGCAGACATTTGTTTTTCTTC
TTTTCTTCTCATTGATCGAGGTTAGAGCGGGGCCACCTGGTGTCTGATGA
TGACTGTTAGTCGTAATATTCTTATACGACCATAGAATTTTAACAAAATA
ACGTACTCTTATAAGTACCCTTATGTCACCTTTTCCAGTATGGAAAAGTC
TTCACTTTACGAGTCGGAGTGAGAAATTTATATAAAATTTCAAAAAATAA
AATTGTTTACAGACAGAGTCTGGGAAAATGCCCCGTTTCAAGTCTCCATG
ATATCATTGTTCTAACAAACAATCCTTTGTTTCTTTGCTTGCATTGTTTT
TCACAGTTTTATATTTTTAGCTTCAGTTTATAAGTTTTATTTTATGTTAA
GTGAGTGTTAAAAACATTTGTCGAGGCTAGATACACGCTAACGTTGTAAC
ACATGCCTTATTTTCAACGTTTTATCAATTACTCATTTTCTTTTGTTCAA
GCTTTTGTTCTATATCATGGCCTTTCATTTCTCAATTTAAATATCAGTAT
ATTTGCTTTTTCAGTTTTTACCGCACTTTTAGAAAAATAAAAATTTGCCT
CTATTTCACGAATATTTGGTCCATAAAATTTCTATTTGTTAAGATCCAAT
ATTCTGAAAACAAAAGAAAGATACATTAATTTTAATGTACTATCCTTAAC
GATAAATATTTCCTTAAAAAATATTTAAATTTCGAAAAAATATTTGAAAA
CCCTAAAAAAGTTTTATAATATTTCATATAAAAAGAGAAAGGACTTTATT
TGCCTGCTGGGGTAAATAAGTCTCATAAATAGAACTGAATAATAGGACGC
CCGCTTAGCTGGAGACTTATTCCGGTTTCTTTAAGTCTGTTAAAATGTGA
TACAGAACTCCCACTAGTATTTATTTCCTACAAAGTTTAGTAAACTTCAA
ATGAAAAAAGAGAGGCTCAACATATGACATTTCAATGAATATCCCTAAAC
TTGTTAAGGCTTTGAAATAATTTCATATACTCGTCCGTCCTAGTCTAAAT
TTTAAAACAAATCCCTGATAGAAGCTTTCCTTTTTATTATCTTAGATCGC
AGTTATACCAAACCAAGAAATTGGACTGACCATTTTAAGCGCAAAAGCAT
TAACACCAAGTTGGCCAGCTATACTCGATATCATAAAAGAATCTCCTGCA
TGGAAGGCCAGCCCGGAGTTGAAGATTGGTGACCAGATCAAAGAAATACA
CGGAATACCGACCGAAAATTTGAAATATTCTGATATCTTGAGTTTATTCT
CGAAAGCAACCGATCGTCTTCATTTAATCTTACGTAGAGGAGTGGAACCC
ACTAAACGTCAATTTGATTGGTTTAAATATCCATTTCTGTCCGTTAGTAA
AGATATTGACGAGATGACTATTAGCTATACTTCAAACTTACAAAAATTGT
ATGAATACGAGATTGATCCTGAACCTCGTTTCCATACATTCGTCAAAGAA
CAACAAAATGAAAGCGATGAACTCAAGCGTTTTAAGGAGACTGAAGTCAG
TGTTTCAAAAGACCGTCGTTTCCGGCATTTTCGATCCCTATCCGCATCTG
CACCTGACCGGGACATGTTCTTAATCCGACAACGTCAACGTCGGAAAACT
GTCCGAGAAAACGTAACCATTAGCGAAAAGTTACGGCGACCGAGTGGATC
ATTTTTCAAAAATACCGGTAGCCGATCAATCATAACTGAAGTGGAGATGA
GACGTTTAAGAAGTGATTCGAGAACTTCGAGCGGAATCGGAGAAGATATG
AGTCGCAAATCATCGCAAAGTAGTTTGAATTCCTCGACCACAACAATTTC
CTCTTTCGCAAGCTCAAATAACATCGAACAACAGGTAAATTTTTGGAACT
CGGGAAATAGATTTGTTTGAAATCTCTTGTTTTTAATGGCCAAGGATTTT
AAAATTCTAATGTTCACAGTTCGAAAACTGAATGGAGCTTTGGTGTCTTT
CAAAGGTGGGCTTCATTAAGTGTTGTTGTCATTTTAAAAAATAATGAAAT
TTTTAAGTATTTTCCTCAATAACCGGGATGGTTTTTTTGTAAAATTACCA
GTGGATAGAATATGGGGGATGAGTATTCGAGTTCTGCAGCTACTATACCG
TTTGCCAATCTTACTTTCTAGAATTGCTACACAAATTTTCGTTCGGAAAA
TGCTGAATCAGCAGATTCTATAACCAATGACCCTTTCACCAGACCACCAC
AGACTATCGACCAAAACAACGATTTCACAAGAACACCTGCTAACAAATTA
AGGGACAGTTTTCGTAAAAAGTTGAAATACAAAAACAATTCCGCCATTAT
GGAACAACCAATTGAGAACACTCTAAATGTCACAGTCTGGATACCAGATC
GCAGGAAGTTTGGAATCAAGCTTGGCGGTGGTTGTGTATCACCTTATGGA
GATAGTAATATCTGTATTATGGAAGTAAAAAAGACTGGTACCGCGTATAA
AGTTTTACGGACTGGGGACGAGATATTGGAGATTGATGGGAAACTGACAA
CTGGCATGGATGTGTTCCAGGTCAATAATATTGTGAAAAGTCTGGAAGGA
AACTATGTCGAAATGAAAATCTTCCGTCCTTTTAAAATATGATTTATTTG
TTACTCAGCAATTTTAGTTCCTTCTTTTTATATGATAATTTATCAAGATT
TATGATTTATCATGGTCCTTTTGTATTTCAATGCACGTTTCAATGACAGA
AATTTTCTACGGAAAAATATCTAATTACAATTCATGTCAGTTACTTAATG
ATAAACTCTAGCATATCTACAGAGGAAGGAAGCTGATTTGAGGTCCTTTT
ATTTTGTAATACTGTGATACATCGCTGACACGCTTTCTGAGATAAGAAGT
GCTCATTAGGGTCATAGGGGTGGAATTAAATTGGGTCAAACCCTTATGAG
TCCAAAACCTAATTGTAGAATAAATATTCTTAATTGATTTCTCAACGAAC
TTGTGACATGTTCTGGGTTAATTAGTCGTTTCGTTTGCCAAAAAAAATCT
AACTTTAC

Coding sequence (CDS) from alignment at sc0000086_pilon:726134..730441-

>MSTRG.11764.1.p1 ID=MSTRG.11764.1.p1|Name=MSTRG.11764.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4770bp|location=Sequence derived from alignment at sc0000086_pilon:726134..730441- (Clytia hemisphaerica_ch_hm2_pilon)
AATTGCTACACAAATTTTCGTTCGGAAAATGCTGAATCAGCAGATTCTAT
AACCAATGACCCTTTCACCAGACCACCACAGACTATCGACCAAAACAACG
ATTTCACAAGAACACCTGCTAACAAATTAAGGGACAGTTTTCGTAAAAAG
TTGAAATACAAAAACAATTCCGCCATTATGGAACAACCAATTGAGAACAC
TCTAAATGTCACAGTCTGGATACCAGATCGCAGGAAGTTTGGAATCAAGC
TTGGCGGTGGTTGTGTATCACCTTATGGAGATAGTAATATCTGTATTATG
GAAGTAAAAAAGACTGGTACCGCGTATAAAGTTTTACGGACTGGGGACGA
GATATTGGAGATTGATGGGAAACTGACAACTGGCATGGATGTGTTCCAGG
TCAATAATATTGTGAAAAGTCTGGAAGGAAACTATGTCGAAATGAAAATC
TTCCGTCCTTTTAAAATATGAATCGCAGTTATACCAAACCAAGAAATTGG
ACTGACCATTTTAAGCGCAAAAGCATTAACACCAAGTTGGCCAGCTATAC
TCGATATCATAAAAGAATCTCCTGCATGGAAGGCCAGCCCGGAGTTGAAG
ATTGGTGACCAGATCAAAGAAATACACGGAATACCGACCGAAAATTTGAA
ATATTCTGATATCTTGAGTTTATTCTCGAAAGCAACCGATCGTCTTCATT
TAATCTTACGTAGAGGAGTGGAACCCACTAAACGTCAATTTGATTGGTTT
AAATATCCATTTCTGTCCGTTAGTAAAGATATTGACGAGATGACTATTAG
CTATACTTCAAACTTACAAAAATTGTATGAATACGAGATTGATCCTGAAC
CTCGTTTCCATACATTCGTCAAAGAACAACAAAATGAAAGCGATGAACTC
AAGCGTTTTAAGGAGACTGAAGTCAGTGTTTCAAAAGACCGTCGTTTCCG
GCATTTTCGATCCCTATCCGCATCTGCACCTGACCGGGACATGTTCTTAA
TCCGACAACGTCAACGTCGGAAAACTGTCCGAGAAAACGTAACCATTAGC
GAAAAGTTACGGCGACCGAGTGGATCATTTTTCAAAAATACCGGTAGCCG
ATCAATCATAACTGAAGTGGAGATGAGACGTTTAAGAAGTGATTCGAGAA
CTTCGAGCGGAATCGGAGAAGATATGAGTCGCAAATCATCGCAAAGTAGT
TTGAATTCCTCGACCACAACAATTTCCTCTTTCGCAAGCTCAAATAACAT
CGAACAACAGATGGTGGAACATAGGCATTACGAGCAAGTATATGAAATAC
ATAAATTGAGAAAATCAGATAAAGACAATGGGCATATCAGTGAAATGCCT
AGATCTATGAAAATGGAGAATGAACCGGTCTGTGAAATACACAAAAAGAG
AATTGAGGATGATATATCTTCGGATGATGGATATTACGGATTAAGCCCTC
CACCACCTTATTCAAAAGATGATTTGATTGGTTATGAAGACAAACGGGAA
GTTGAGAGGCGAAGAAGTATTTGTTATTCACCCATTGAAGTTTGTCCACG
AATTGAGTATAATGATGTGGGAGAAGAAATTAATGTCACTAATTGCTACA
CAAATTTTCGTTCGGAAAATGCTGAATCAGCAGATTCTATAACCAATGAC
CCTTTCACCAGACCACCACAGACTATCGACCAAAACAACGATTTCACAAG
AACACCTGCTAACAAATTAAGGGACAGTTTTCGTAAAAAGTTGAAATACA
AAAACAATTCCGCCATTATGGAACAACCAATTGAGAACACTCTAAATGTC
ACAGTCTGGATACCAGATCGCAGGAAGTTTGGAATCAAGCTTGGCGGTGG
TTGTGTATCACCTTATGGAGATAGTAATATCTGTATTATGGAAGTAAAAA
AGACTGGTACCGCGTATAAAGTTTTACGGACTGGGGACGAGATATTGGAG
ATTGATGGGAAACTGACAACTGGCATGGATGTGTTCCAGGTCAATAATAT
TGTGAAAAGTCTGGAAGGAAACTATGTCGAAATGAAAATCTTCCGTCCTT
TTAAAATATGAATCGCAGTTATACCAAACCAAGAAATTGGACTGACCATT
TTAAGCGCAAAAGCATTAACACCAAGTTGGCCAGCTATACTCGATATCAT
AAAAGAATCTCCTGCATGGAAGGCCAGCCCGGAGTTGAAGATTGGTGACC
AGATCAAAGAAATACACGGAATACCGACCGAAAATTTGAAATATTCTGAT
ATCTTGAGTTTATTCTCGAAAGCAACCGATCGTCTTCATTTAATCTTACG
TAGAGGAGTGGAACCCACTAAACGTCAATTTGATTGGTTTAAATATCCAT
TTCTGTCCGTTAGTAAAGATATTGACGAGATGACTATTAGCTATACTTCA
AACTTACAAAAATTGTATGAATACGAGATTGATCCTGAACCTCGTTTCCA
TACATTCGTCAAAGAACAACAAAATGAAAGCGATGAACTCAAGCGTTTTA
AGGAGACTGAAGTCAGTGTTTCAAAAGACCGTCGTTTCCGGCATTTTCGA
TCCCTATCCGCATCTGCACCTGACCGGGACATGTTCTTAATCCGACAACG
TCAACGTCGGAAAACTGTCCGAGAAAACGTAACCATTAGCGAAAAGTTAC
GGCGACCGAGTGGATCATTTTTCAAAAATACCGGTAGCCGATCAATCATA
ACTGAAGTGGAGATGAGACGTTTAAGAAGTGATTCGAGAACTTCGAGCGG
AATCGGAGAAGATATGAGTCGCAAATCATCGCAAAGTAGTTTGAATTCCT
CGACCACAACAATTTCCTCTTTCGCAAGCTCAAATAACATCGAACAACAG
ATGGTGGAACATAGGCATTACGAGCAAGTATATGAAATACATAAATTGAG
AAAATCAGATAAAGACAATGGGCATATCAGTGAAATGCCTAGATCTATGA
AAATGGAGAATGAACCGGTCTGTGAAATACACAAAAAGAGAATTGAGGAT
GATATATCTTCGGATGATGGATATTACGGATTAAGCCCTCCACCACCTTA
TTCAAAAGATGATTTGATTGGTTATGAAGACAAACGGGAAGTTGAGAGGC
GAAGAAGTATTTGTTATTCACCCATTGAAGTTTGTCCACGAATTGAGTAT
AATGATGTGGGAGAAGAAATTAATGTCACTAATTGCTACACAAATTTTCG
TTCGGAAAATGCTGAATCAGCAGATTCTATAACCAATGACCCTTTCACCA
GACCACCACAGACTATCGACCAAAACAACGATTTCACAAGAACACCTGCT
AACAAATTAAGGGACAGTTTTCGTAAAAAGTTGAAATACAAAAACAATTC
CGCCATTATGGAACAACCAATTGAGAACACTCTAAATGTCACAGTCTGGA
TACCAGATCGCAGGAAGTTTGGAATCAAGCTTGGCGGTGGTTGTGTATCA
CCTTATGGAGATAGTAATATCTGTATTATGGAAGTAAAAAAGACTGGTAC
CGCGTATAAAGTTTTACGGACTGGGGACGAGATATTGGAGATTGATGGGA
AACTGACAACTGGCATGGATGTGTTCCAGGTCAATAATATTGTGAAAAGT
CTGGAAGGAAACTATGTCGAAATGAAAATCTTCCGTCCTTTTAAAATATG
AATCGCAGTTATACCAAACCAAGAAATTGGACTGACCATTTTAAGCGCAA
AAGCATTAACACCAAGTTGGCCAGCTATACTCGATATCATAAAAGAATCT
CCTGCATGGAAGGCCAGCCCGGAGTTGAAGATTGGTGACCAGATCAAAGA
AATACACGGAATACCGACCGAAAATTTGAAATATTCTGATATCTTGAGTT
TATTCTCGAAAGCAACCGATCGTCTTCATTTAATCTTACGTAGAGGAGTG
GAACCCACTAAACGTCAATTTGATTGGTTTAAATATCCATTTCTGTCCGT
TAGTAAAGATATTGACGAGATGACTATTAGCTATACTTCAAACTTACAAA
AATTGTATGAATACGAGATTGATCCTGAACCTCGTTTCCATACATTCGTC
AAAGAACAACAAAATGAAAGCGATGAACTCAAGCGTTTTAAGGAGACTGA
AGTCAGTGTTTCAAAAGACCGTCGTTTCCGGCATTTTCGATCCCTATCCG
CATCTGCACCTGACCGGGACATGTTCTTAATCCGACAACGTCAACGTCGG
AAAACTGTCCGAGAAAACGTAACCATTAGCGAAAAGTTACGGCGACCGAG
TGGATCATTTTTCAAAAATACCGGTAGCCGATCAATCATAACTGAAGTGG
AGATGAGACGTTTAAGAAGTGATTCGAGAACTTCGAGCGGAATCGGAGAA
GATATGAGTCGCAAATCATCGCAAAGTAGTTTGAATTCCTCGACCACAAC
AATTTCCTCTTTCGCAAGCTCAAATAACATCGAACAACAGATGGTGGAAC
ATAGGCATTACGAGCAAGTATATGAAATACATAAATTGAGAAAATCAGAT
AAAGACAATGGGCATATCAGTGAAATGCCTAGATCTATGAAAATGGAGAA
TGAACCGGTCTGTGAAATACACAAAAAGAGAATTGAGGATGATATATCTT
CGGATGATGGATATTACGGATTAAGCCCTCCACCACCTTATTCAAAAGAT
GATTTGATTGGTTATGAAGACAAACGGGAAGTTGAGAGGCGAAGAAGTAT
TTGTTATTCACCCATTGAAGTTTGTCCACGAATTGAGTATAATGATGTGG
GAGAAGAAATTAATGTCACT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11764MSTRG.11764Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11764.1.p1MSTRG.11764.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11764.1.p1.exon3MSTRG.11764.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11764.1.p1.exon2MSTRG.11764.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11764.1.p1.exon1MSTRG.11764.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086_pilongenomesc0000086_pilon:726134..730441 -