MSTRG.11717.1.p1 (mRNA) -

Overview
NameMSTRG.11717.1.p1
Unique NameMSTRG.11717.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000086_pilon:34710..37708-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11717.1.p1 ID=MSTRG.11717.1.p1|Name=MSTRG.11717.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2999bp|location=Sequence derived from alignment at sc0000086_pilon:34710..37708- (Clytia hemisphaerica_ch_hm2_pilon)
GTCATAATGAGCTTTGTATAAAGCCCAAATTGCAGAGAACGATAAACTCG
GTATACATTCACACGTCATTCATCTGGATAAGGCTATCACTATGTCTCAC
TAACATTCTGCAGAATGATAGTGTGAAGGTTTTGATTACAGACTAGGAAC
GCAACACAAGCATTCGCAACTTGGAATATGTTAATAAGATACCTTAAGTC
ATTTTATTTAACCACATAAGTTGTGGTTATTCAGCTAAAGTTGTCTATGA
AATAGAAACGAATTTCGTAAAAACAAATACATATGATTTTATAATGGCAA
ATGGTGGTGTAATTCACTGGTTTCGTAAAGGGTTACGGCTGCATGACAAC
CCTGCTTTGATCAATGCATTAGAATCCAAACTTCGTTTGTACCCAATCTT
TATTTTGGATCCTTGGTTTGTCAAAAATGCATGCGTTGGTGTTAATCGGT
GGAGATTTTTACAGCAAACATTGACAGACTTAGATCAACAACTGAGGAGG
TTAGGTTCTAGGCTACTTGTGGTACGAGGAAAACCAGAGGTGAAATTCCC
AGAGCTGATTAAAAATTGGAATGTACAAAAATTAACTTATGAAATTGATA
CAGAACCATATTCTAAGATACGAGACAAGAAAGTTGATGAATTGGCTGCT
GAATATAAAGTAGAGGTATCTTCCCATGTGTCCCACACCCTTTATGATGT
CAATAAAATTATTGGTAAGAATAAAGGGCAGCCACCTTTAACTTACCAGA
AACACGAATTGTTGATTGCATCTCTGGGGCCACCACCAAAGTCTTTGGAT
GCACCAAAAAATATACCAAGTGATTACCAGATGCCTGAAGACGTGTTGAA
AAATGGAGATTTTGACATCCCAACACTAGAGGAGTTGGGTGTTTGTGAAT
CAGATTTGAACTCTTGTTTATACAAAGGTGGAGAAACAGAAGGTTTGAAA
CGCTTGAATTCCTATATTTGTGAAGAAAAGAAGAATTGGGTTGCTGATTT
TGAGAAACCTAAAACATCACCGAACAGTTTGGAACCAAGTACAACTGTCT
TAAGCCCTTACCTGAAATTTGGATGTGTTTCTCCAAGATTGATGTACGAG
CGACTTCAAATGGTGTATAAATTGAAACCAAAACACTCTAAGCCACCTGT
TTCGTTGTATGGTCAATTGTTATGGAGAGAATTTTTTTACACTTGTGGAT
CTGCTGTCCAAAACTTTGATCAAATGAAAGGTATTGTTTGCTAAAATGTC
AATTTTTTGGTTATACCCAAGAATGTTTTTCTTTAGGCCATATGAAGAAA
GAAACAATATCAGTCCCACCTTACTGATTTATCCTCTGCTAGCTTTATTT
ATTTATTTAGTTACATTGAAAAGTGTTTTCCTTTCAATTTTCCGTCTCAA
TAGATATATTATTTTTAGAGGTAACTTTAGGAAGAACTTGATATTGTTCA
CAATTCCCTCTTAAGTTTTAGCCAAAATCGAGACTTGTGCTCTTATATAA
AAAGTTCTAATTGAAAGACTTTTCTTTAGGGAATCCTATTTGTCGACAAA
TTGATTGGGACACAAACACAGAATATCTTGCAGCATGGCGTGAAGGGCGA
ACTGGTTATCCATACATCGATGCCATTATGATTCAACTACGACAAGAAGG
TTGGATACATCATTTAGCGAGACATTCAGTGGCTTGTTTCTTAACAAGAG
GCGATTTGTATATTTCATGGGAAGAAGGTATTGGTGGTTTTATTCTGTTA
CTTTTATTGATTTCAGTATGTCTAAAACAAAAAATGACAAACTTTTATTA
TTCGTTTATTCAATTATAGATGAAAACTATCCTGAAACCTTTTGATAGAG
ATGCGATTTGTCAACTCCTCTATTTTCAGTCGTGGCTGAAACAATGGTCC
AAAAAATTTATACTTACAATTTAAAAGATATTGAACAAATTTGAAATAAT
CTTTCTTTTAGGCATGAAAGTGTTTGAGGAGTATCTATTGGACGCTGACT
GGTCTTTGAATGCTGCTAACTGGATGTGGTTATCCGCCTCTGCCTTCTTC
CACCAATACTTTAGAGTGTATAGTCCCGTCGCCTTTGGAAAGAAGACAGA
CCCCCGAGGTCTATACATTAAGAAGTATCTTCCCAAACTGGCCAAATTTC
CTGAGAAGTATATCTACGAGCCTTGGGACGCGCCACTTGATATTCAGAAA
CGAGCTGGCTGCATCATAGGAAAGGTATTGGTTCGATTGATTGATTGATT
GATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGA
TTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATT
GATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGA
TTGATTATTTTTATAAAAGACATGAGTGGGCCCGGAGTACCTTTTTTGAT
GTCTCAGTTTGTATTTTATTGTCTTTTTTCGTACAAAAACTAAGAATTTT
GCATGAATTCATTTTTGCTCTTTCATTCTAAAATTTCTAGGACTACCCTC
GGCCAATCGTGGATCATGCTAAAATCTCCAAAATCAATATGGGGCGAATG
AAAGTGATTTTCAGCAAAGGTAAAAGTGAAAGTGGAGCCCAATCATCGAC
AGCTAAAAGGAAAAGTGAATCTTCAGGTGCCACTCCACCTAAAAAGAAAA
AGAAAAACACCATTGAAAATGTATTCGCCAAAAAGAAAAAATGATGATTA
CGTGTTTAAAAAAAGAAGGGTTGTCTTGAAGCAGGATATTGTCCTTTCAA
ACGAGAAACTTGTTAGCCTTGCAGAAAAACTGTGTAACGGAAAGCTAGAT
GATGTGTTGAAATTGAAATTGAAATCGAAATTCATCCAACTCATATCGTT
GATATTTAATTCTAGCATTGTTATTCATGCATTTGTTTTATTTTGTGTGG
TGATAAATTTCAACTTCCTTTAAAAGTGCTGGCCATCGTTCCTAAAAAT

Coding sequence (CDS) from alignment at sc0000086_pilon:34710..37708-

>MSTRG.11717.1.p1 ID=MSTRG.11717.1.p1|Name=MSTRG.11717.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6408bp|location=Sequence derived from alignment at sc0000086_pilon:34710..37708- (Clytia hemisphaerica_ch_hm2_pilon)
GACTACCCTCGGCCAATCGTGGATCATGCTAAAATCTCCAAAATCAATAT
GGGGCGAATGAAAGTGATTTTCAGCAAAGGTAAAAGTGAAAGTGGAGCCC
AATCATCGACAGCTAAAAGGAAAAGTGAATCTTCAGGTGCCACTCCACCT
AAAAAGAAAAAGAAAAACACCATTGAAAATGTATTCGCCAAAAAGAAAAA
ATGAGCATGAAAGTGTTTGAGGAGTATCTATTGGACGCTGACTGGTCTTT
GAATGCTGCTAACTGGATGTGGTTATCCGCCTCTGCCTTCTTCCACCAAT
ACTTTAGAGTGTATAGTCCCGTCGCCTTTGGAAAGAAGACAGACCCCCGA
GGTCTATACATTAAGAAGTATCTTCCCAAACTGGCCAAATTTCCTGAGAA
GTATATCTACGAGCCTTGGGACGCGCCACTTGATATTCAGAAACGAGCTG
GCTGCATCATAGGAAAGGGAATCCTATTTGTCGACAAATTGATTGGGACA
CAAACACAGAATATCTTGCAGCATGGCGTGAAGGGCGAACTGGTTATCCA
TACATCGATGCCATTATGATTCAACTACGACAAGAAGGTTGGATACATCA
TTTAGCGAGACATTCAGTGGCTTGTTTCTTAACAAGAGGCGATTTGTATA
TTTCATGGGAAGAAGATGGCAAATGGTGGTGTAATTCACTGGTTTCGTAA
AGGGTTACGGCTGCATGACAACCCTGCTTTGATCAATGCATTAGAATCCA
AACTTCGTTTGTACCCAATCTTTATTTTGGATCCTTGGTTTGTCAAAAAT
GCATGCGTTGGTGTTAATCGGTGGAGATTTTTACAGCAAACATTGACAGA
CTTAGATCAACAACTGAGGAGGTTAGGTTCTAGGCTACTTGTGGTACGAG
GAAAACCAGAGGTGAAATTCCCAGAGCTGATTAAAAATTGGAATGTACAA
AAATTAACTTATGAAATTGATACAGAACCATATTCTAAGATACGAGACAA
GAAAGTTGATGAATTGGCTGCTGAATATAAAGTAGAGGTATCTTCCCATG
TGTCCCACACCCTTTATGATGTCAATAAAATTATTGGTAAGAATAAAGGG
CAGCCACCTTTAACTTACCAGAAACACGAATTGTTGATTGCATCTCTGGG
GCCACCACCAAAGTCTTTGGATGCACCAAAAAATATACCAAGTGATTACC
AGATGCCTGAAGACGTGTTGAAAAATGGAGATTTTGACATCCCAACACTA
GAGGAGTTGGGTGTTTGTGAATCAGATTTGAACTCTTGTTTATACAAAGG
TGGAGAAACAGAAGGTTTGAAACGCTTGAATTCCTATATTTGTGAAGAAA
AGAAGAATTGGGTTGCTGATTTTGAGAAACCTAAAACATCACCGAACAGT
TTGGAACCAAGTACAACTGTCTTAAGCCCTTACCTGAAATTTGGATGTGT
TTCTCCAAGATTGATGTACGAGCGACTTCAAATGGTGTATAAATTGAAAC
CAAAACACTCTAAGCCACCTGTTTCGTTGTATGGTCAATTGTTATGGAGA
GAATTTTTTTACACTTGTGGATCTGCTGTCCAAAACTTTGATCAAATGAA
AGGACTACCCTCGGCCAATCGTGGATCATGCTAAAATCTCCAAAATCAAT
ATGGGGCGAATGAAAGTGATTTTCAGCAAAGGTAAAAGTGAAAGTGGAGC
CCAATCATCGACAGCTAAAAGGAAAAGTGAATCTTCAGGTGCCACTCCAC
CTAAAAAGAAAAAGAAAAACACCATTGAAAATGTATTCGCCAAAAAGAAA
AAATGAGCATGAAAGTGTTTGAGGAGTATCTATTGGACGCTGACTGGTCT
TTGAATGCTGCTAACTGGATGTGGTTATCCGCCTCTGCCTTCTTCCACCA
ATACTTTAGAGTGTATAGTCCCGTCGCCTTTGGAAAGAAGACAGACCCCC
GAGGTCTATACATTAAGAAGTATCTTCCCAAACTGGCCAAATTTCCTGAG
AAGTATATCTACGAGCCTTGGGACGCGCCACTTGATATTCAGAAACGAGC
TGGCTGCATCATAGGAAAGGGAATCCTATTTGTCGACAAATTGATTGGGA
CACAAACACAGAATATCTTGCAGCATGGCGTGAAGGGCGAACTGGTTATC
CATACATCGATGCCATTATGATTCAACTACGACAAGAAGGTTGGATACAT
CATTTAGCGAGACATTCAGTGGCTTGTTTCTTAACAAGAGGCGATTTGTA
TATTTCATGGGAAGAAGATGGCAAATGGTGGTGTAATTCACTGGTTTCGT
AAAGGGTTACGGCTGCATGACAACCCTGCTTTGATCAATGCATTAGAATC
CAAACTTCGTTTGTACCCAATCTTTATTTTGGATCCTTGGTTTGTCAAAA
ATGCATGCGTTGGTGTTAATCGGTGGAGATTTTTACAGCAAACATTGACA
GACTTAGATCAACAACTGAGGAGGTTAGGTTCTAGGCTACTTGTGGTACG
AGGAAAACCAGAGGTGAAATTCCCAGAGCTGATTAAAAATTGGAATGTAC
AAAAATTAACTTATGAAATTGATACAGAACCATATTCTAAGATACGAGAC
AAGAAAGTTGATGAATTGGCTGCTGAATATAAAGTAGAGGTATCTTCCCA
TGTGTCCCACACCCTTTATGATGTCAATAAAATTATTGGTAAGAATAAAG
GGCAGCCACCTTTAACTTACCAGAAACACGAATTGTTGATTGCATCTCTG
GGGCCACCACCAAAGTCTTTGGATGCACCAAAAAATATACCAAGTGATTA
CCAGATGCCTGAAGACGTGTTGAAAAATGGAGATTTTGACATCCCAACAC
TAGAGGAGTTGGGTGTTTGTGAATCAGATTTGAACTCTTGTTTATACAAA
GGTGGAGAAACAGAAGGTTTGAAACGCTTGAATTCCTATATTTGTGAAGA
AAAGAAGAATTGGGTTGCTGATTTTGAGAAACCTAAAACATCACCGAACA
GTTTGGAACCAAGTACAACTGTCTTAAGCCCTTACCTGAAATTTGGATGT
GTTTCTCCAAGATTGATGTACGAGCGACTTCAAATGGTGTATAAATTGAA
ACCAAAACACTCTAAGCCACCTGTTTCGTTGTATGGTCAATTGTTATGGA
GAGAATTTTTTTACACTTGTGGATCTGCTGTCCAAAACTTTGATCAAATG
AAAGGACTACCCTCGGCCAATCGTGGATCATGCTAAAATCTCCAAAATCA
ATATGGGGCGAATGAAAGTGATTTTCAGCAAAGGTAAAAGTGAAAGTGGA
GCCCAATCATCGACAGCTAAAAGGAAAAGTGAATCTTCAGGTGCCACTCC
ACCTAAAAAGAAAAAGAAAAACACCATTGAAAATGTATTCGCCAAAAAGA
AAAAATGAGCATGAAAGTGTTTGAGGAGTATCTATTGGACGCTGACTGGT
CTTTGAATGCTGCTAACTGGATGTGGTTATCCGCCTCTGCCTTCTTCCAC
CAATACTTTAGAGTGTATAGTCCCGTCGCCTTTGGAAAGAAGACAGACCC
CCGAGGTCTATACATTAAGAAGTATCTTCCCAAACTGGCCAAATTTCCTG
AGAAGTATATCTACGAGCCTTGGGACGCGCCACTTGATATTCAGAAACGA
GCTGGCTGCATCATAGGAAAGGGAATCCTATTTGTCGACAAATTGATTGG
GACACAAACACAGAATATCTTGCAGCATGGCGTGAAGGGCGAACTGGTTA
TCCATACATCGATGCCATTATGATTCAACTACGACAAGAAGGTTGGATAC
ATCATTTAGCGAGACATTCAGTGGCTTGTTTCTTAACAAGAGGCGATTTG
TATATTTCATGGGAAGAAGATGGCAAATGGTGGTGTAATTCACTGGTTTC
GTAAAGGGTTACGGCTGCATGACAACCCTGCTTTGATCAATGCATTAGAA
TCCAAACTTCGTTTGTACCCAATCTTTATTTTGGATCCTTGGTTTGTCAA
AAATGCATGCGTTGGTGTTAATCGGTGGAGATTTTTACAGCAAACATTGA
CAGACTTAGATCAACAACTGAGGAGGTTAGGTTCTAGGCTACTTGTGGTA
CGAGGAAAACCAGAGGTGAAATTCCCAGAGCTGATTAAAAATTGGAATGT
ACAAAAATTAACTTATGAAATTGATACAGAACCATATTCTAAGATACGAG
ACAAGAAAGTTGATGAATTGGCTGCTGAATATAAAGTAGAGGTATCTTCC
CATGTGTCCCACACCCTTTATGATGTCAATAAAATTATTGGTAAGAATAA
AGGGCAGCCACCTTTAACTTACCAGAAACACGAATTGTTGATTGCATCTC
TGGGGCCACCACCAAAGTCTTTGGATGCACCAAAAAATATACCAAGTGAT
TACCAGATGCCTGAAGACGTGTTGAAAAATGGAGATTTTGACATCCCAAC
ACTAGAGGAGTTGGGTGTTTGTGAATCAGATTTGAACTCTTGTTTATACA
AAGGTGGAGAAACAGAAGGTTTGAAACGCTTGAATTCCTATATTTGTGAA
GAAAAGAAGAATTGGGTTGCTGATTTTGAGAAACCTAAAACATCACCGAA
CAGTTTGGAACCAAGTACAACTGTCTTAAGCCCTTACCTGAAATTTGGAT
GTGTTTCTCCAAGATTGATGTACGAGCGACTTCAAATGGTGTATAAATTG
AAACCAAAACACTCTAAGCCACCTGTTTCGTTGTATGGTCAATTGTTATG
GAGAGAATTTTTTTACACTTGTGGATCTGCTGTCCAAAACTTTGATCAAA
TGAAAGGACTACCCTCGGCCAATCGTGGATCATGCTAAAATCTCCAAAAT
CAATATGGGGCGAATGAAAGTGATTTTCAGCAAAGGTAAAAGTGAAAGTG
GAGCCCAATCATCGACAGCTAAAAGGAAAAGTGAATCTTCAGGTGCCACT
CCACCTAAAAAGAAAAAGAAAAACACCATTGAAAATGTATTCGCCAAAAA
GAAAAAATGAGCATGAAAGTGTTTGAGGAGTATCTATTGGACGCTGACTG
GTCTTTGAATGCTGCTAACTGGATGTGGTTATCCGCCTCTGCCTTCTTCC
ACCAATACTTTAGAGTGTATAGTCCCGTCGCCTTTGGAAAGAAGACAGAC
CCCCGAGGTCTATACATTAAGAAGTATCTTCCCAAACTGGCCAAATTTCC
TGAGAAGTATATCTACGAGCCTTGGGACGCGCCACTTGATATTCAGAAAC
GAGCTGGCTGCATCATAGGAAAGGGAATCCTATTTGTCGACAAATTGATT
GGGACACAAACACAGAATATCTTGCAGCATGGCGTGAAGGGCGAACTGGT
TATCCATACATCGATGCCATTATGATTCAACTACGACAAGAAGGTTGGAT
ACATCATTTAGCGAGACATTCAGTGGCTTGTTTCTTAACAAGAGGCGATT
TGTATATTTCATGGGAAGAAGATGGCAAATGGTGGTGTAATTCACTGGTT
TCGTAAAGGGTTACGGCTGCATGACAACCCTGCTTTGATCAATGCATTAG
AATCCAAACTTCGTTTGTACCCAATCTTTATTTTGGATCCTTGGTTTGTC
AAAAATGCATGCGTTGGTGTTAATCGGTGGAGATTTTTACAGCAAACATT
GACAGACTTAGATCAACAACTGAGGAGGTTAGGTTCTAGGCTACTTGTGG
TACGAGGAAAACCAGAGGTGAAATTCCCAGAGCTGATTAAAAATTGGAAT
GTACAAAAATTAACTTATGAAATTGATACAGAACCATATTCTAAGATACG
AGACAAGAAAGTTGATGAATTGGCTGCTGAATATAAAGTAGAGGTATCTT
CCCATGTGTCCCACACCCTTTATGATGTCAATAAAATTATTGGTAAGAAT
AAAGGGCAGCCACCTTTAACTTACCAGAAACACGAATTGTTGATTGCATC
TCTGGGGCCACCACCAAAGTCTTTGGATGCACCAAAAAATATACCAAGTG
ATTACCAGATGCCTGAAGACGTGTTGAAAAATGGAGATTTTGACATCCCA
ACACTAGAGGAGTTGGGTGTTTGTGAATCAGATTTGAACTCTTGTTTATA
CAAAGGTGGAGAAACAGAAGGTTTGAAACGCTTGAATTCCTATATTTGTG
AAGAAAAGAAGAATTGGGTTGCTGATTTTGAGAAACCTAAAACATCACCG
AACAGTTTGGAACCAAGTACAACTGTCTTAAGCCCTTACCTGAAATTTGG
ATGTGTTTCTCCAAGATTGATGTACGAGCGACTTCAAATGGTGTATAAAT
TGAAACCAAAACACTCTAAGCCACCTGTTTCGTTGTATGGTCAATTGTTA
TGGAGAGAATTTTTTTACACTTGTGGATCTGCTGTCCAAAACTTTGATCA
AATGAAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11717MSTRG.11717Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11717.1.p1MSTRG.11717.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11717.1.p1.exon4MSTRG.11717.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11717.1.p1.exon3MSTRG.11717.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11717.1.p1.exon2MSTRG.11717.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11717.1.p1.exon1MSTRG.11717.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086_pilongenomesc0000086_pilon:34710..37708 -