MSTRG.11714.1.p1 (mRNA) -

Overview
NameMSTRG.11714.1.p1
Unique NameMSTRG.11714.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000086_pilon:18758..23594+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11714.1.p1 ID=MSTRG.11714.1.p1|Name=MSTRG.11714.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4837bp|location=Sequence derived from alignment at sc0000086_pilon:18758..23594+ (Clytia hemisphaerica_ch_hm2_pilon)
GGGAGTTATTCAAATCTAGGTTAGCGCTTATTGGAGCACATGgttttgtt
taccttttttccgccatttttattttcaaaatttttacaagatgaagtca
gaagtttttcagcaatttcAAGAGGTGAATTTTCAAGGATCAATCACATC
TGAAATCAATCTTGAGAAGTTCAGAAGAGAAGATAAAGAACTAGTGTTGA
TTGCAGCACCTGCTGAGGTATATACCTTTTCCAAACGAATGAATTATACG
CCCAGGAGGAAGAAggagaaacaaaaaacaactaCTAAAACAGGAGGAGA
AAAGCCTGATTCATGGTAGCcTGGGAATCCATGCTATGATTTCTTCTTTG
ATAAACTGATGGCgaaatgtatagcatggtacgggctgagagtttgaatt
tctcagatcctaataacggttgaaaacatacccaatcaaattttgttatt
cttttactggtcacactttcttagagagcaactttcgaaatttggttttt
attttagtaagtgaggacagcgctaaattcgaatttcccactgtaaaaaa
tgtgagtccaatatagacctttttttaaagaggcaaccctgttgaataat
tatgtagtccagcataaaaacaatgatacagccatgcataattactgttt
catgcatattataataattatgcatggctatatcattgttttttttgctg
gactacataattattcaacagggtggcctcattaaaaaaaggtctattgg
actcacagctcgaacccgtcttgtgtatatacatcaaattataaaaaaac
acacgacagGTCTCCTGTCTAGATTCATGGGGAAGAAAAGTAGACTCTTT
GGTTTGATATTTACAAATTAGTGACAAAGTTAGGCGACCggtcattttga
tgaaaacaaaaaaaataaaaaggacgTGCTATCAGTGAAAACTTACATCT
GTTACATAATCTGTGTGCTTTTCGCGCGCTTACAGTTTCACGATAATCGG
AATGAGCCGTCGGGCGGATGAGGCGGAATAGATTATATCAACTTTgtttt
ctattgttattttatattttacggGGAGATCGAGATTAGCTCGATCCTTC
TCTCACTGAACACTGTAGATATCAGATGTCTTAGATTTATATCATGTAAA
GAATCATAAACTACTACAACAATCGCTTCACTTTAATCCAATCCAACAAT
TTgtacaaaacaaatttgttgtcaaagtgaTTTAACAGTATACAAGTAAA
AATACagtccagatatcaacagtcccatgtttcgaccaaccgtccaaagt
tagagcagttgacggtagatgaaaagatttgactCATACCAACCTTGAAA
GCTAATTTGAAGAACAACACTGTACAAGTAAAAGTAATCTAAGGGTGAGA
AGACGGCAACCTAGATCTGCGCACCACTAGATAGgctttttctcagaaat
tttgtTGGAGCTTGAGACTGACCCACATGTGCATCCGgaataatttttaa
tttggTGTGTAATTAAAGCATAGAAAATGGAAATGCTAGCTCAGTAATTG
ATCAACAAATTTTGGTCCATTGATTAGCTGGTTTTTGCACGTTATTAGCA
AAGGATCACTTTATTTTGTTTCAgtctttcaaattcaaattttatttttg
tcttgtGATCTTCAACTTGATTTTGGTTTCTTTCATTCTAGGTCAATTTA
AATCATGGTACTTTCGAAAAGTACCTTTATTCTTggtaatttttcataaa
ttccCTCTTAGAGCCtttttttCCCTGTTGCAAAAGCTTTTTGATCCAAA
TTAAATCCAAACcaaaaattcttctttcagaCCAggtttattatttaatt
tatatTGTTTTACCCTCTTTACTTTTCTTGTTTTATAGTTTGATGTGGGA
AATCTCAAAGGACAAGTGATCGTTCCAAATGGAGTGATTAGTATTGGTGA
TGTAAATGATAATAATGACGAGGTaaatattcatttattttttcaattgt
aCAGGGTTTCCTGAAAAGGCCTATATGTCAAAACATGAGGACAAGTAGGA
AAGTAGAACATAATTTTGTTTATAATGTCAAAAATTAATATTTACCTGGT
TCAATTATACTAATGCAAATGTTAATAACTCTTTACTTCGCTTGTTCAAA
CaagaatattgtttttttttcatgtaaTAAATATTTCAGGGAATATATTT
TAGTTAGATAATCATTTTTTCGTTTAACTGTATAATACTCAAGTCAAatg
gatttgacgaaaaataaGCACATTATATTAGCAAATCAGTGAGCTTTGGA
CATTGGGCATTGTTTTGGGTTTACTTGGGAaggttcattttttttttcat
tttaaatgacaccatttttttcagaaaaataagcAAATCACAAGCATAAT
TCGAGCTCGAAGCCAAAATATAGCTTAACGTGTTTTCCAGAAAGATTGTT
TGCTATCGTATTTTACCAGTAAATTGTTTCACTTTTCCACTCAATAAAAC
GAATAAGTCTTACTTTACAACTTACACTATGTTTCTTTTATTACAGACAG
CTGACGATGGGAATGGGATGCTTTGGAACATTGAAGCTACGGAAAGTAAA
GCTCAAAAGGTGGCCATACAGTGTGTCCCGGAAAACTGTATTTTTATGTA
TATAAAGTAATATCCTCAAAACTCATCATCTAAACTGCGCTTCGattaat
tgaaaaaagattatacacttctctgttcaatcaatagattttcaattccc
aagacGATTGATTTATTTGTTGTTTCTGTGTTACTGGAAAAACAGAGCCG
GGAATACATTCtttgttttatgacttttgtcaaaaaatttttatcaattt
tttctttagaatatGAACGTGATGCTACCGAAAATTGAAAGCAAGAAATA
TGAACTAGGTTAGAATGGTTTAGTGTAATCCAAAATTTCGAATTTAAATT
ACGAATGactacatttggtttgaattaaCGAGGGAgggttttttgaagtt
ttaatgATGGACCccttaaagaaattattttacaTCTTTAACAGTTCAAG
GACACTTTCTATCCAATAAGGAGCTCATGCGAAGGTTTTTGTATGTCGAA
AATCCTAAATCATGTGTGACGATTCTGCTTTACTCTTTTTTACTATAATC
CCTTTTTTACCTCTTTATAACACAAAAAGATTGTAGCCCTAAAATAAAGG
TTCTGGGAGAAAAATTTATTACTCaattaaacaaaatgaaatgaattCGA
TCGTATCTTCTCATACATCTCCAGGCCCAAATATTTCATGTCAATTGGAA
GTTTACAAGTCGTTCAATGTTCCAGCAATTAAATATCCGAAAGTTAGTAA
GAAGATCAAGAAACTACACAGACCCGATGATTTGCCTGTTAGATGGGAAC
CCTTTGGCGCTAGTAAGTTTATGCCtttttttCAATTACAGGAGattttc
tataactcgaatgtcttctgGAACAAGTTATCTGGCTATGGAACagttat
tattatattttcataactcgaaaaaatttgCTCCGCTGTATTTTCAGATT
TCTCACTTTTATTTGAGCTCTAGTATCTTAATGTCTTAAACGGTTGGATT
TGTTTGAGATTTTGCTTACTTTTCCCTTGGGTAAATGAATCCTTaatcct
ttttattttgttaatttttgtcTGGTCTGGAACGAGTTCAAGCGAGAAAA
CAAGAATAAGATTCTTTAGTGCGCATGCGATGTACCCggagaaattcaat
attcaaaacaagatcAGTGCgtatatcccgaagagtaggagttttacgct
cgaaacgaaggaagatatgacgtagcctagatTCTTCTGAAATTTCTATA
ATTTAAGATTTTGCGGCATTAATTACTTTACTTGGATTAAGGAGAAAAAT
TCGAAACACAAAACCcatatttctatttctaattGTATTTACAGATGCAC
CATTGACCGACAAAGAATCGAACACTTTCgcctataagaaaaataaatcg
aACGGAGCAGCGAAACGGATAATTGAAATTGCCCGGTCAGAAGAGTTAGT
TGAAAAACCAcccaagaaaaagaagaaacgaaaGTCTAAAATACAAGATG
AAGATGATAATGAAATAGAGACAAATGACAGAAAACATTCTAAAGGGGAT
GGAGACGAAGAGGAGAGTAGCTCTCCAGttaaaaggaagaagaaaaagaa
gaaaaataaagactgaaggataattgaaaattgaaattattgcttACAAA
CCTCACATAGacttaaaagtaataatttaaAACTCGTGGAATTGAATCAC
AACACTTAAGTTTTAAAGCAGATTTTCAAATAGAATCAACCAGTTGACTA
TATGGAATGCTTTAGTTTGGAAACATTGCTATGGAAAGTAAAGACTATAT
ACAACCATaaatacgtgatttggaaaaacTGAGGACCTGTGGATTGTTTT
ATGATTgtacagtagcgtagacagggctGTCGCAAAATTTGTGTTGAAGA
GCAGATATTTATGTCACATTGATTATCTATTCAtgttataaaaagataat
tactttgTCATGACATATCAGCTCTCCCCTAAACAAATtaccctgtctac
gctactgttgTATAAAGAGACAATGTGCTTTGTCCTGTATAACATTCAGA
GAAAAGGCTCGTTATTTTGAATAGTATACTACCATTTTACAGGAATAGTA
CAGATTCCATGTTGATATAATTTGTCCGTATTTATCATCATTACCCTTTT
GTTAATCAACATTGTTTTAGGGGTTGTTCCGAGATGAAGATACACGGGAA
GGGGCACTTTCACCTTTGTACACTCCTCCCTTTCTTT

Coding sequence (CDS) from alignment at sc0000086_pilon:18758..23594+

>MSTRG.11714.1.p1 ID=MSTRG.11714.1.p1|Name=MSTRG.11714.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4392bp|location=Sequence derived from alignment at sc0000086_pilon:18758..23594+ (Clytia hemisphaerica_ch_hm2_pilon)
atgaagtcagaagtttttcagcaatttcAAGAGGTGAATTTTCAAGGATC
AATCACATCTGAAATCAATCTTGAGAAGTTCAGAAGAGAAGATAAAGAAC
TAGTGTTGATTGCAGCACCTGCTGAGTTTGATGTGGGAAATCTCAAAGGA
CAAGTGATCGTTCCAAATGGAGTGATTAGTATTGGTGATGTAAATGATAA
TAATGACGAGACAGCTGACGATGGGAATGGGATGCTTTGGAACATTGAAG
CTACGGAAAGTAAAGCTCAAAAGaatatGAACGTGATGCTACCGAAAATT
GAAAGCAAGAAATATGAACTAGGCCCAAATATTTCATGTCAATTGGAAGT
TTACAAGTCGTTCAATGTTCCAGCAATTAAATATCCGAAAGTTAGTAAGA
AGATCAAGAAACTACACAGACCCGATGATTTGCCTGTTAGATGGGAACCC
TTTGGCGCTAATGCACCATTGACCGACAAAGAATCGAACACTTTCgccta
taagaaaaataaatcgaACGGAGCAGCGAAACGGATAATTGAAATTGCCC
GGTCAGAAGAGTTAGTTGAAAAACCAcccaagaaaaagaagaaacgaaaG
TCTAAAATACAAGATGAAGATGATAATGAAATAGAGACAAATGACAGAAA
ACATTCTAAAGGGGATGGAGACGAAGAGGAGAGTAGCTCTCCAGttaaaa
ggaagaagaaaaagaagaaaaataaagactgaatgaagtcagaagttttt
cagcaatttcAAGAGGTGAATTTTCAAGGATCAATCACATCTGAAATCAA
TCTTGAGAAGTTCAGAAGAGAAGATAAAGAACTAGTGTTGATTGCAGCAC
CTGCTGAGTTTGATGTGGGAAATCTCAAAGGACAAGTGATCGTTCCAAAT
GGAGTGATTAGTATTGGTGATGTAAATGATAATAATGACGAGACAGCTGA
CGATGGGAATGGGATGCTTTGGAACATTGAAGCTACGGAAAGTAAAGCTC
AAAAGaatatGAACGTGATGCTACCGAAAATTGAAAGCAAGAAATATGAA
CTAGGCCCAAATATTTCATGTCAATTGGAAGTTTACAAGTCGTTCAATGT
TCCAGCAATTAAATATCCGAAAGTTAGTAAGAAGATCAAGAAACTACACA
GACCCGATGATTTGCCTGTTAGATGGGAACCCTTTGGCGCTAATGCACCA
TTGACCGACAAAGAATCGAACACTTTCgcctataagaaaaataaatcgaA
CGGAGCAGCGAAACGGATAATTGAAATTGCCCGGTCAGAAGAGTTAGTTG
AAAAACCAcccaagaaaaagaagaaacgaaaGTCTAAAATACAAGATGAA
GATGATAATGAAATAGAGACAAATGACAGAAAACATTCTAAAGGGGATGG
AGACGAAGAGGAGAGTAGCTCTCCAGttaaaaggaagaagaaaaagaaga
aaaataaagactgaatgaagtcagaagtttttcagcaatttcAAGAGGTG
AATTTTCAAGGATCAATCACATCTGAAATCAATCTTGAGAAGTTCAGAAG
AGAAGATAAAGAACTAGTGTTGATTGCAGCACCTGCTGAGTTTGATGTGG
GAAATCTCAAAGGACAAGTGATCGTTCCAAATGGAGTGATTAGTATTGGT
GATGTAAATGATAATAATGACGAGACAGCTGACGATGGGAATGGGATGCT
TTGGAACATTGAAGCTACGGAAAGTAAAGCTCAAAAGaatatGAACGTGA
TGCTACCGAAAATTGAAAGCAAGAAATATGAACTAGGCCCAAATATTTCA
TGTCAATTGGAAGTTTACAAGTCGTTCAATGTTCCAGCAATTAAATATCC
GAAAGTTAGTAAGAAGATCAAGAAACTACACAGACCCGATGATTTGCCTG
TTAGATGGGAACCCTTTGGCGCTAATGCACCATTGACCGACAAAGAATCG
AACACTTTCgcctataagaaaaataaatcgaACGGAGCAGCGAAACGGAT
AATTGAAATTGCCCGGTCAGAAGAGTTAGTTGAAAAACCAcccaagaaaa
agaagaaacgaaaGTCTAAAATACAAGATGAAGATGATAATGAAATAGAG
ACAAATGACAGAAAACATTCTAAAGGGGATGGAGACGAAGAGGAGAGTAG
CTCTCCAGttaaaaggaagaagaaaaagaagaaaaataaagactgaatga
agtcagaagtttttcagcaatttcAAGAGGTGAATTTTCAAGGATCAATC
ACATCTGAAATCAATCTTGAGAAGTTCAGAAGAGAAGATAAAGAACTAGT
GTTGATTGCAGCACCTGCTGAGTTTGATGTGGGAAATCTCAAAGGACAAG
TGATCGTTCCAAATGGAGTGATTAGTATTGGTGATGTAAATGATAATAAT
GACGAGACAGCTGACGATGGGAATGGGATGCTTTGGAACATTGAAGCTAC
GGAAAGTAAAGCTCAAAAGaatatGAACGTGATGCTACCGAAAATTGAAA
GCAAGAAATATGAACTAGGCCCAAATATTTCATGTCAATTGGAAGTTTAC
AAGTCGTTCAATGTTCCAGCAATTAAATATCCGAAAGTTAGTAAGAAGAT
CAAGAAACTACACAGACCCGATGATTTGCCTGTTAGATGGGAACCCTTTG
GCGCTAATGCACCATTGACCGACAAAGAATCGAACACTTTCgcctataag
aaaaataaatcgaACGGAGCAGCGAAACGGATAATTGAAATTGCCCGGTC
AGAAGAGTTAGTTGAAAAACCAcccaagaaaaagaagaaacgaaaGTCTA
AAATACAAGATGAAGATGATAATGAAATAGAGACAAATGACAGAAAACAT
TCTAAAGGGGATGGAGACGAAGAGGAGAGTAGCTCTCCAGttaaaaggaa
gaagaaaaagaagaaaaataaagactgaatgaagtcagaagtttttcagc
aatttcAAGAGGTGAATTTTCAAGGATCAATCACATCTGAAATCAATCTT
GAGAAGTTCAGAAGAGAAGATAAAGAACTAGTGTTGATTGCAGCACCTGC
TGAGTTTGATGTGGGAAATCTCAAAGGACAAGTGATCGTTCCAAATGGAG
TGATTAGTATTGGTGATGTAAATGATAATAATGACGAGACAGCTGACGAT
GGGAATGGGATGCTTTGGAACATTGAAGCTACGGAAAGTAAAGCTCAAAA
GaatatGAACGTGATGCTACCGAAAATTGAAAGCAAGAAATATGAACTAG
GCCCAAATATTTCATGTCAATTGGAAGTTTACAAGTCGTTCAATGTTCCA
GCAATTAAATATCCGAAAGTTAGTAAGAAGATCAAGAAACTACACAGACC
CGATGATTTGCCTGTTAGATGGGAACCCTTTGGCGCTAATGCACCATTGA
CCGACAAAGAATCGAACACTTTCgcctataagaaaaataaatcgaACGGA
GCAGCGAAACGGATAATTGAAATTGCCCGGTCAGAAGAGTTAGTTGAAAA
ACCAcccaagaaaaagaagaaacgaaaGTCTAAAATACAAGATGAAGATG
ATAATGAAATAGAGACAAATGACAGAAAACATTCTAAAGGGGATGGAGAC
GAAGAGGAGAGTAGCTCTCCAGttaaaaggaagaagaaaaagaagaaaaa
taaagactgaatgaagtcagaagtttttcagcaatttcAAGAGGTGAATT
TTCAAGGATCAATCACATCTGAAATCAATCTTGAGAAGTTCAGAAGAGAA
GATAAAGAACTAGTGTTGATTGCAGCACCTGCTGAGTTTGATGTGGGAAA
TCTCAAAGGACAAGTGATCGTTCCAAATGGAGTGATTAGTATTGGTGATG
TAAATGATAATAATGACGAGACAGCTGACGATGGGAATGGGATGCTTTGG
AACATTGAAGCTACGGAAAGTAAAGCTCAAAAGaatatGAACGTGATGCT
ACCGAAAATTGAAAGCAAGAAATATGAACTAGGCCCAAATATTTCATGTC
AATTGGAAGTTTACAAGTCGTTCAATGTTCCAGCAATTAAATATCCGAAA
GTTAGTAAGAAGATCAAGAAACTACACAGACCCGATGATTTGCCTGTTAG
ATGGGAACCCTTTGGCGCTAATGCACCATTGACCGACAAAGAATCGAACA
CTTTCgcctataagaaaaataaatcgaACGGAGCAGCGAAACGGATAATT
GAAATTGCCCGGTCAGAAGAGTTAGTTGAAAAACCAcccaagaaaaagaa
gaaacgaaaGTCTAAAATACAAGATGAAGATGATAATGAAATAGAGACAA
ATGACAGAAAACATTCTAAAGGGGATGGAGACGAAGAGGAGAGTAGCTCT
CCAGttaaaaggaagaagaaaaagaagaaaaataaagactga
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11714MSTRG.11714Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11714.1.p1MSTRG.11714.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11714.1.p1.exon1MSTRG.11714.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11714.1.p1.exon2MSTRG.11714.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11714.1.p1.exon3MSTRG.11714.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11714.1.p1.exon4MSTRG.11714.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11714.1.p1.exon5MSTRG.11714.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11714.1.p1.exon6MSTRG.11714.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000086_pilongenomesc0000086_pilon:18758..23594 +