MSTRG.11693.1.p1 (mRNA) -

Overview
NameMSTRG.11693.1.p1
Unique NameMSTRG.11693.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000085_pilon:1051711..1055827+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11693.1.p1 ID=MSTRG.11693.1.p1|Name=MSTRG.11693.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4117bp|location=Sequence derived from alignment at sc0000085_pilon:1051711..1055827+ (Clytia hemisphaerica_ch_hm2_pilon)
AAAGATATAGCTTTTGtcgatagaaatatttttgatcctTAGGaaaaaaa
GTCCTATGGTCGAGTTTTAAGTATGAAATGCTTTTATTGTAAAGAGGACA
ATAGGTGACTGATTTTCAAGGCAAGAACAAAGCAATCATTAACAAAAAAC
ATGAGTAATTCTGTGGTTAGATTTTTCCGATCCACCTAAAAGCTTTCACT
ACTCGCAttttttttAGAGGAGGTAGGGAGTGCGTTAGCTAGGATTGACA
TCCATCCATCCTCAGATTGCATCGAACTAGCtatttcttttacaaaaatg
atGTCCATTAAACTGGTGGCATTATGTGCGCTCTTGCCGGCTATTTTCAC
CATACCTGGAATCTCGATCAATGATATGTTTGCTTATGGACCTAACAATG
GAGACAATGGGAATTCATATCATGGTATAGAAGCGGCTGCTTTTTTGGAT
GGGTTTGAAACAGTCGATGTACCAAACAACTTACCCAGTGTCAGATGGGG
TGGTAAAGATTTAGGCAGAAGAGCATTTGTAAGCATTTTATTTTCACATT
CTTTCGTTGCACTATAATCTTTAGTAAGCAATAAATCATCTTTTTGTATA
TTGAGCGGTCATTTGAGAGTGCTGTGTAGAGCGAATTCGTAAAATCTATT
TGTAAATTTCAACGTTGAAAATGATATATTTTAATTCAAGTTGCATGCCT
TACACAAATCATTATAGCACTCTAGAGTAGTCTGGTCTTAGTAAATCAAA
CATTTCCGCCTGAACAAGCTTTTCAACTAcgtaatattttgattttttga
agcatCATCGAAGGGTGATAATCTAAACGCTTACTTTTACATTCCATCTT
CTGTGGTGGCTTCGATGAGAAGTTAAGACCCCATTTTAGGGCGTTAAAAG
GTGTcataaaactgaaagatttCATGAATagctttttcaaagttttaatt
cCATCGATCTGATTATGACGACGTTTTTCTCATTTCATTGCATAAATTCC
TCGCAAATAGAGAGCCCCTTATAGTGCATTTTAACGATTACCCTCTTTTT
GAGGttggtcattattttttggcaCGTCGAGCCTTGAATGTTTGTCATCA
AGTTCTTTTATTAGGGAAATTTCACCCTTCGTGCGCTCTAAGTTCAAGTA
TTTCAGGATTGGtgttatgttcttatttttttatgttGAGCTTTATTGTT
CTTAAATAAAATAAACGAGCACaaaaaaaCCAACAACAAAACAACGACCA
TGATACATTATCAACTTTCGTTTTGGTTTTAGATTAACTTTAACGGACAT
ATCACATTTGGAAACAACCATAGAAACCAGGACCCTGCAACCATTCAAAA
TTTGGATGCCAGTATCACCGCTATTTTTTACCCTTTCTATTCCGATAACG
ATATTCGACGACCCGATGGTATGCTATATTATCGATTGTCTACACAAGCA
AGTGATTTGAGCCTAGCTAACACACTTATCCGTGGACGAAATTTTGTTGG
TTTCACAACAAGATACTGTATCATTGCCACATGGCATAAAAACAAGTACT
ACATTGGTACAGGTGATAAAGCAGATCCCAACCGTCAACAAGAAAACACA
TATCAAGCTGCCTTGTGTGTTGGTGATTCTGACAGTCACATTATCTACCA
TTATAATGAAATGAATTGGGACAAATCTGAAGATCCAGATTCATCTGATT
CAAGAGTAAGAACTTTTTCTAATCTTCTTCTTTCAATGAACACCACAAAG
ATTAGGCGTGTCAAACACTTTTTCTCTCTGCCCAGCGTCTAAGTTTTATC
CAATTTATCTAACTAccctttcaaaactttttggccTCTTTCTAGATTGG
ATGGCTCGTTAAAGGAGTCACAGACTCTTCCTTGGCTTCTTGGGTATCAC
CATACTCAGGACAAACAGATGCTTACGCCAGTCAAGCTACTCAATCAAAT
GTTGGTGTAGCCGGGCGATGGATGAGATCTACTGTAGCTGGTAGGTTAGT
TCTCTGGAAAAGGGAAATAAGCAAAAAGAGATTCCTTCTCTTGGGGATTA
AGATTTTTCAATATGCTTTTTCATCTGTTTTCGTGGATTTTTTGGCAGTA
CAATTTAATACGTTTAGGCATGAACCCGCAtttttgtgtttgataactcg
agttttgttttgagcttttttcgatttatttggtgttttaaactcagttt
ttttCGTGCCCTTGACTTTCCGAGTTATCTGATAAatttaactcgggttt
tttttcgtGCCAAATCTGCCCCTTCAGGTAACCCATATAAACAAGTAGAA
TCGTCCATGAATCAAATATCAACTATAAAAATACAATGTAAATTACTCGA
AAACTTTGAGACACGaaaaaaaCCCGAgtgaaaattcatcaaattactCG
AAAAGTTGAAAGCTaaaaaaaaaCTCGAGGTATAATCTTTATGATGATGt
cataatgacgtcacaaaactgaaattatgacgtcaaattcaaaataactc
gggaattccaggcCCCAAATTTATGGCGACCTACAGTAAATATTCGCAAC
TCAGGAATCGTAATGAGGTTAAAAAGGTTAGAAAGGATGAACCTTTTTCC
GCTCGTAAAAGTTGCAAAAGTAAGCGAATCAAAAGTGAGAGTGTGATGAT
GAAAAGGGAgctaatatttttaattttggcaaaaatggtaaaaaagaaat
tgttcaAACATTTATTACGTTTTTAGTTGGACCATGTGTGAACCTTGCTG
ATGGATTATATCAAGTGAGTTGCCAACAATATCGTGAATGTTGTGGAAAA
GCAGAACAAGCTGTCAGAACCTGTCCAGTAGGAACAAATTTCCACCCAAC
ACTTAAACGTTGCATcgacacaaaaaattacaattgcGGCGGAGCAGGTA
AGTGCCTTTCAGATTTCTTTCATGAGAGCTAGAGATGGAAACAGAGCTCA
AGATAAAGAAATAcgatttttaaagttaaaacaatGCTGAAACAATGCCA
CGTTTCAATgctttttataaatctttaaaCAAAGCTCTTTTACGTCTGAG
GATGCAAAGCAGACTATTTAGCTGTCTAAGTTAAAGCTTGTGGACAATGA
TAACGAAGGTTGATGAGCCGTATGGCTCAACTTATCAAGCTCTAAGGTTA
AGCATATAAAAGTAATGTTTGGATATAGAGAACTCTTTTCCACTAAGTGG
ATCAAGACCTCATTTAACATGGTCtaagaaaaatgaatctttCCTATTCA
TTTCTGACTGTTGACGACTCATCAACTTCTTAATCAAATCTTCTAACGTA
TGATTAAAGGTTGTCTCTGCTGATGAAAGGTTTGTATAGTAGATGGCGCT
ACCCCTTTCAAATGATATTAACATTTCTTTCTACTAGCAAACCTTTGCGA
TTCTTTCGCGTTGAACGGAAATTTTGCCGACACGTCAACTACTGCTCTAG
ATGACTACATTCGATGCAAAAATGGTATTGGCCATAAATTGAAATGTCCT
TTTGGTATTGTTTTTGGATCATCTGCTATTTGCAATTAGAAAGATAAGCA
ACACAGGTATCAAAATCGAGGAAAATCGTTGAAGAAAGAGCATACATGAA
GGAATGAAACGACCAATTTGAGATGAGTTATATGCAATGTATAATCAATC
AGTTTGTAAAGAATCAGTATGCGGATaaaatgtttccaaaattaaaattt
tgtttttatatagaaatgaatgttttattttttaaatgaataaatagtta
aataCCGTTGAGAAGAGTACTAGCAATAAGCTTATCGGCGAAAAACCCAG
AAATTCGAATCCATCTTTTGAAGTCAGAAACCGTTTGACAAACTTTCACT
TTAAGTAGTTCAATCTGACATCCTATACTGTGAATACCTTTGAAAGTAGA
AGTACCATTTCAGTATTAATCATATATAATTGTCTTTATAATGCACCCCT
AAtattttttactatcattttatttatataccttttgtttttgtgttatc
ttgaatagcattttctttttcttttattctattgaagcttcttctttttg
TCGTTGTTGTTGGTATTTACCTTCTAATTTAATCCTTTTTACTGCTTGCT
TCTCAAGGTGTCTCTCC

Coding sequence (CDS) from alignment at sc0000085_pilon:1051711..1055827+

>MSTRG.11693.1.p1 ID=MSTRG.11693.1.p1|Name=MSTRG.11693.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5610bp|location=Sequence derived from alignment at sc0000085_pilon:1051711..1055827+ (Clytia hemisphaerica_ch_hm2_pilon)
atgatGTCCATTAAACTGGTGGCATTATGTGCGCTCTTGCCGGCTATTTT
CACCATACCTGGAATCTCGATCAATGATATGTTTGCTTATGGACCTAACA
ATGGAGACAATGGGAATTCATATCATGGTATAGAAGCGGCTGCTTTTTTG
GATGGGTTTGAAACAGTCGATGTACCAAACAACTTACCCAGTGTCAGATG
GGGTGGTAAAGATTTAGGCAGAAGAGCATTTATTAACTTTAACGGACATA
TCACATTTGGAAACAACCATAGAAACCAGGACCCTGCAACCATTCAAAAT
TTGGATGCCAGTATCACCGCTATTTTTTACCCTTTCTATTCCGATAACGA
TATTCGACGACCCGATGGTATGCTATATTATCGATTGTCTACACAAGCAA
GTGATTTGAGCCTAGCTAACACACTTATCCGTGGACGAAATTTTGTTGGT
TTCACAACAAGATACTGTATCATTGCCACATGGCATAAAAACAAGTACTA
CATTGGTACAGGTGATAAAGCAGATCCCAACCGTCAACAAGAAAACACAT
ATCAAGCTGCCTTGTGTGTTGGTGATTCTGACAGTCACATTATCTACCAT
TATAATGAAATGAATTGGGACAAATCTGAAGATCCAGATTCATCTGATTC
AAGAATTGGATGGCTCGTTAAAGGAGTCACAGACTCTTCCTTGGCTTCTT
GGGTATCACCATACTCAGGACAAACAGATGCTTACGCCAGTCAAGCTACT
CAATCAAATGTTGGTGTAGCCGGGCGATGGATGAGATCTACTGTAGCTGT
TGGACCATGTGTGAACCTTGCTGATGGATTATATCAAGTGAGTTGCCAAC
AATATCGTGAATGTTGTGGAAAAGCAGAACAAGCTGTCAGAACCTGTCCA
GTAGGAACAAATTTCCACCCAACACTTAAACGTTGCATcgacacaaaaaa
ttacaattgcGGCGGAGCAGCAAACCTTTGCGATTCTTTCGCGTTGAACG
GAAATTTTGCCGACACGTCAACTACTGCTCTAGATGACTACATTCGATGC
AAAAATGGTATTGGCCATAAATTGAAATGTCCTTTTGGTATTGTTTTTGG
ATCATCTGCTATTTGCAATTAGatgatGTCCATTAAACTGGTGGCATTAT
GTGCGCTCTTGCCGGCTATTTTCACCATACCTGGAATCTCGATCAATGAT
ATGTTTGCTTATGGACCTAACAATGGAGACAATGGGAATTCATATCATGG
TATAGAAGCGGCTGCTTTTTTGGATGGGTTTGAAACAGTCGATGTACCAA
ACAACTTACCCAGTGTCAGATGGGGTGGTAAAGATTTAGGCAGAAGAGCA
TTTATTAACTTTAACGGACATATCACATTTGGAAACAACCATAGAAACCA
GGACCCTGCAACCATTCAAAATTTGGATGCCAGTATCACCGCTATTTTTT
ACCCTTTCTATTCCGATAACGATATTCGACGACCCGATGGTATGCTATAT
TATCGATTGTCTACACAAGCAAGTGATTTGAGCCTAGCTAACACACTTAT
CCGTGGACGAAATTTTGTTGGTTTCACAACAAGATACTGTATCATTGCCA
CATGGCATAAAAACAAGTACTACATTGGTACAGGTGATAAAGCAGATCCC
AACCGTCAACAAGAAAACACATATCAAGCTGCCTTGTGTGTTGGTGATTC
TGACAGTCACATTATCTACCATTATAATGAAATGAATTGGGACAAATCTG
AAGATCCAGATTCATCTGATTCAAGAATTGGATGGCTCGTTAAAGGAGTC
ACAGACTCTTCCTTGGCTTCTTGGGTATCACCATACTCAGGACAAACAGA
TGCTTACGCCAGTCAAGCTACTCAATCAAATGTTGGTGTAGCCGGGCGAT
GGATGAGATCTACTGTAGCTGTTGGACCATGTGTGAACCTTGCTGATGGA
TTATATCAAGTGAGTTGCCAACAATATCGTGAATGTTGTGGAAAAGCAGA
ACAAGCTGTCAGAACCTGTCCAGTAGGAACAAATTTCCACCCAACACTTA
AACGTTGCATcgacacaaaaaattacaattgcGGCGGAGCAGCAAACCTT
TGCGATTCTTTCGCGTTGAACGGAAATTTTGCCGACACGTCAACTACTGC
TCTAGATGACTACATTCGATGCAAAAATGGTATTGGCCATAAATTGAAAT
GTCCTTTTGGTATTGTTTTTGGATCATCTGCTATTTGCAATTAGatgatG
TCCATTAAACTGGTGGCATTATGTGCGCTCTTGCCGGCTATTTTCACCAT
ACCTGGAATCTCGATCAATGATATGTTTGCTTATGGACCTAACAATGGAG
ACAATGGGAATTCATATCATGGTATAGAAGCGGCTGCTTTTTTGGATGGG
TTTGAAACAGTCGATGTACCAAACAACTTACCCAGTGTCAGATGGGGTGG
TAAAGATTTAGGCAGAAGAGCATTTATTAACTTTAACGGACATATCACAT
TTGGAAACAACCATAGAAACCAGGACCCTGCAACCATTCAAAATTTGGAT
GCCAGTATCACCGCTATTTTTTACCCTTTCTATTCCGATAACGATATTCG
ACGACCCGATGGTATGCTATATTATCGATTGTCTACACAAGCAAGTGATT
TGAGCCTAGCTAACACACTTATCCGTGGACGAAATTTTGTTGGTTTCACA
ACAAGATACTGTATCATTGCCACATGGCATAAAAACAAGTACTACATTGG
TACAGGTGATAAAGCAGATCCCAACCGTCAACAAGAAAACACATATCAAG
CTGCCTTGTGTGTTGGTGATTCTGACAGTCACATTATCTACCATTATAAT
GAAATGAATTGGGACAAATCTGAAGATCCAGATTCATCTGATTCAAGAAT
TGGATGGCTCGTTAAAGGAGTCACAGACTCTTCCTTGGCTTCTTGGGTAT
CACCATACTCAGGACAAACAGATGCTTACGCCAGTCAAGCTACTCAATCA
AATGTTGGTGTAGCCGGGCGATGGATGAGATCTACTGTAGCTGTTGGACC
ATGTGTGAACCTTGCTGATGGATTATATCAAGTGAGTTGCCAACAATATC
GTGAATGTTGTGGAAAAGCAGAACAAGCTGTCAGAACCTGTCCAGTAGGA
ACAAATTTCCACCCAACACTTAAACGTTGCATcgacacaaaaaattacaa
ttgcGGCGGAGCAGCAAACCTTTGCGATTCTTTCGCGTTGAACGGAAATT
TTGCCGACACGTCAACTACTGCTCTAGATGACTACATTCGATGCAAAAAT
GGTATTGGCCATAAATTGAAATGTCCTTTTGGTATTGTTTTTGGATCATC
TGCTATTTGCAATTAGatgatGTCCATTAAACTGGTGGCATTATGTGCGC
TCTTGCCGGCTATTTTCACCATACCTGGAATCTCGATCAATGATATGTTT
GCTTATGGACCTAACAATGGAGACAATGGGAATTCATATCATGGTATAGA
AGCGGCTGCTTTTTTGGATGGGTTTGAAACAGTCGATGTACCAAACAACT
TACCCAGTGTCAGATGGGGTGGTAAAGATTTAGGCAGAAGAGCATTTATT
AACTTTAACGGACATATCACATTTGGAAACAACCATAGAAACCAGGACCC
TGCAACCATTCAAAATTTGGATGCCAGTATCACCGCTATTTTTTACCCTT
TCTATTCCGATAACGATATTCGACGACCCGATGGTATGCTATATTATCGA
TTGTCTACACAAGCAAGTGATTTGAGCCTAGCTAACACACTTATCCGTGG
ACGAAATTTTGTTGGTTTCACAACAAGATACTGTATCATTGCCACATGGC
ATAAAAACAAGTACTACATTGGTACAGGTGATAAAGCAGATCCCAACCGT
CAACAAGAAAACACATATCAAGCTGCCTTGTGTGTTGGTGATTCTGACAG
TCACATTATCTACCATTATAATGAAATGAATTGGGACAAATCTGAAGATC
CAGATTCATCTGATTCAAGAATTGGATGGCTCGTTAAAGGAGTCACAGAC
TCTTCCTTGGCTTCTTGGGTATCACCATACTCAGGACAAACAGATGCTTA
CGCCAGTCAAGCTACTCAATCAAATGTTGGTGTAGCCGGGCGATGGATGA
GATCTACTGTAGCTGTTGGACCATGTGTGAACCTTGCTGATGGATTATAT
CAAGTGAGTTGCCAACAATATCGTGAATGTTGTGGAAAAGCAGAACAAGC
TGTCAGAACCTGTCCAGTAGGAACAAATTTCCACCCAACACTTAAACGTT
GCATcgacacaaaaaattacaattgcGGCGGAGCAGCAAACCTTTGCGAT
TCTTTCGCGTTGAACGGAAATTTTGCCGACACGTCAACTACTGCTCTAGA
TGACTACATTCGATGCAAAAATGGTATTGGCCATAAATTGAAATGTCCTT
TTGGTATTGTTTTTGGATCATCTGCTATTTGCAATTAGatgatGTCCATT
AAACTGGTGGCATTATGTGCGCTCTTGCCGGCTATTTTCACCATACCTGG
AATCTCGATCAATGATATGTTTGCTTATGGACCTAACAATGGAGACAATG
GGAATTCATATCATGGTATAGAAGCGGCTGCTTTTTTGGATGGGTTTGAA
ACAGTCGATGTACCAAACAACTTACCCAGTGTCAGATGGGGTGGTAAAGA
TTTAGGCAGAAGAGCATTTATTAACTTTAACGGACATATCACATTTGGAA
ACAACCATAGAAACCAGGACCCTGCAACCATTCAAAATTTGGATGCCAGT
ATCACCGCTATTTTTTACCCTTTCTATTCCGATAACGATATTCGACGACC
CGATGGTATGCTATATTATCGATTGTCTACACAAGCAAGTGATTTGAGCC
TAGCTAACACACTTATCCGTGGACGAAATTTTGTTGGTTTCACAACAAGA
TACTGTATCATTGCCACATGGCATAAAAACAAGTACTACATTGGTACAGG
TGATAAAGCAGATCCCAACCGTCAACAAGAAAACACATATCAAGCTGCCT
TGTGTGTTGGTGATTCTGACAGTCACATTATCTACCATTATAATGAAATG
AATTGGGACAAATCTGAAGATCCAGATTCATCTGATTCAAGAATTGGATG
GCTCGTTAAAGGAGTCACAGACTCTTCCTTGGCTTCTTGGGTATCACCAT
ACTCAGGACAAACAGATGCTTACGCCAGTCAAGCTACTCAATCAAATGTT
GGTGTAGCCGGGCGATGGATGAGATCTACTGTAGCTGTTGGACCATGTGT
GAACCTTGCTGATGGATTATATCAAGTGAGTTGCCAACAATATCGTGAAT
GTTGTGGAAAAGCAGAACAAGCTGTCAGAACCTGTCCAGTAGGAACAAAT
TTCCACCCAACACTTAAACGTTGCATcgacacaaaaaattacaattgcGG
CGGAGCAGCAAACCTTTGCGATTCTTTCGCGTTGAACGGAAATTTTGCCG
ACACGTCAACTACTGCTCTAGATGACTACATTCGATGCAAAAATGGTATT
GGCCATAAATTGAAATGTCCTTTTGGTATTGTTTTTGGATCATCTGCTAT
TTGCAATTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11693MSTRG.11693Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11693.1.p1MSTRG.11693.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11693.1.p1.exon1MSTRG.11693.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11693.1.p1.exon2MSTRG.11693.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11693.1.p1.exon3MSTRG.11693.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11693.1.p1.exon4MSTRG.11693.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11693.1.p1.exon5MSTRG.11693.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085_pilongenomesc0000085_pilon:1051711..1055827 +