MSTRG.11689.6.p1 (mRNA) -

Overview
NameMSTRG.11689.6.p1
Unique NameMSTRG.11689.6.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000085_pilon:951800..955023+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11689.6.p1 ID=MSTRG.11689.6.p1|Name=MSTRG.11689.6.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3224bp|location=Sequence derived from alignment at sc0000085_pilon:951800..955023+ (Clytia hemisphaerica_ch_hm2_pilon)
tttttggcTTGTATGGAAGGTCAAGTATAAAAATCAAGGATTCATGAAAT
ATCTACCCAAAGTAAATTTCTCATCTGTTGTCACACCATATGAATATCAA
ATGAAAGGGGATTTTCTACCTCCTCACTTACGTAAACAAAAACTTATCCT
TTTCTTCACATCACATTTCTACAGTGACATCTGGAAAGGATTAGGTCCTG
ATGTATTACCTGGGTACACCCAAAATGCACATTGTAACATTAAAGAATGT
TCAATGACTTATGACAAAAAGAGAATAAACGAGGCAGATCTTGTGATATT
TCATGGTGTAGATTTTGAATATAAGAATTATACTGATAAACATTTCCAAG
CAATGTTAAAGAAGAAACCATCTCATCAACGATGGGTGTTTTGGATGCAT
GAGACTCCTGTTTACTATCCAGAACCTGGaaattatgataatttattCAA
TTGGACTATGACATTCAGTCAAGGGTCTGATATCTACCACCCATATTACT
CTTACAGAAGGCTAACTGCTGATGATGACAGACCTGGAAAGTACATGAAC
TATGCTCTTGGAAGAACAAAGAAAATAGCCTGGATGGTAAGTCATTGTGG
TATGACAAGAGGTGAATATGTTATGGAACTGCAAAAGTATACTGATGTTA
CTGTTTATGGTTTGTGTGGGGCATCTTATGATAATATGGCAGGCATATGT
TCTCGTGTTGAAAGTGAGTGTATGGATCAATTGAATCAATATCgatttta
tcttgcttttgaAAACTCATTTTGTGAAGACTATGTGACAGAAAAGTATT
ATAAATTTGGCATAATGTATGGTGCTGTACCAATAGTGATGGGCGCTAGA
TACAATGCATTGAATTCTATACCAGGGTCTTACATTGATGCTTCCACATT
TCCTTCAGTACAAGCTTTAGGAGAATACATTAATTTCCTCAGTGAAAATG
ATTATTACTACAATCAATATTTTGAGTGGAAAAATCACTTCAAAATGGAC
GATGGAATTGATAAGATTTGTTTACTTTGTCATGCAGCTCATGATGTAAC
TAGAAAGTCTAGTTTCCATAAACATTTCCATGCTTTTTGGAGCAAACAAG
CAATGTGTGATCCCTATGAACCTGTCATTCAAAAGTTTGGTCACCAAATT
GAACAGTCCAAACTTTCTAGAATAGGCGAAGGTACAAAATCATAGACCta
ttttataattaaaacattatctttttttataaccatttttaccttttgca
ctttattttttagaactttaATCAATACTAAATTTAATAGTTATATCAAG
TAAAATTACACATCTAGAATTTCTGCCTTGtgtcttttttttcactttgc
agtaggtttctttttctttaaggtAGGCAATATTTCCAATTGGTCTTCTT
GATAGTATTGTATTCTTTCCTCTTTAATAGATGAATAGTAAAGATAATTA
AatggatatttcaaaaataagaaatagtTTCCAGCTGAAATTTGGTTTGC
ATTTTATTTCAAGAACTATAGTAAAAGGTAAtacatttcattgaaaaatc
atattgCTTCAACCAGAAGGCATTACGCAGCTAATACCTAAACTCGTTAC
ACTGGTGGTGAAATGTATAATctgtaaaaatcataaaattgttAATAAAA
ATAGAATGTTTTAAAGAAAGTTACTTGAAACAGAAACCAAAGATTCATTC
TTACCTATGTATCCTATATACTTATTAAAGAGCTGTGAATTAACCATTCA
ATTGGAGTGTTTACTCTTTTGTTAGTACTGAACACAGTTGATGGTCATAT
TTGTAAAATTGGTTACTCACCATTTATCATAGTTGGACATCAACCAACGG
GAtcacttctttatttaattattcgactagaagaacaatgttaacaatat
tttctttattaatAGAATATTGCAGAAAAATGAGCAATTACATGAACTAT
TCTGAAGCTTCAAAGCTTTATGATGAAGCACGAGTTGCAGCAGATGCTGA
AAACATTTACAACATTTTCACTGGGCTTCTCAAGAAACCAGCAAACAAAG
TATTTCATTTATCAGCATTTATCAATGATTTCTTATGTTTGTACATTGAG
CCGGTTTGTTAACAACCTCATTTCCTGCGTATtagctttttatgattttt
tatcaaagtaTTGTTTTGCATGAGCTTCTTCAAAAACTTCttaaataatc
aaaaataaatattatggtgtattttattgtaattttattgcaatttttct
ttaatttttagatcgatcttttGGATATTGGATGTGGTACAGGCAACTAC
AGTTATTCTTTCATGAAAAATGGTTTACAAAGCATTACCATTGCTGATGC
TTCTCAGGAGATGTTAAACTgtgccaaaatcaaaatgaaagtaTTTGAAG
ATAAAGTCACTGCACAAGATATCATTTTACCAAACTTACCATTTCCTGAG
AAAAGCTTTGATGTTATTTCTTGCATGCAGGTTTTACACCATATTGATTC
TGCTGCTTTGAAAGAATCAACCAAGGAACATCTTCAACGGGAAGACTATC
CAAACATGCTTGAAACCTTGGGTCAAGCTTACAATGTTTTAAAACCTGGT
GGGGTACTAGTTATTGATGTTATGTTTGAAGAAAATTGTGAAAGTTTTTG
GTGGACCAGATTATGTCCAATAGCTGCTAAGGCGTTCAAAAGACTAAGAA
TGAGCCAAAAGGACATGATTCAGTCCTTAGAGAAACTTAATTTTGAGAAT
ATTGTTTGCACATACTTTCCAGGCTCTCGCTTAGTTAAAAAGGAGATTTA
TGATGAAATTCAATGTATAGATGATCCTAAATGGAGATATTATCTTTCTC
AGTACAAATTGGTTGAAAAGTCTGGTGAATTAGATAACCTAATTAAAATT
GTAAAAGACGCAGAGACTTCTGGAAAACTGAAAGAGTATTTTGACGATTG
GAGTGAAAAGCTCTGGACACATGGGAATCATAGTGCTGtttttgcaatga
agcctttagcatagatttttgtttaatttttattaagtttgatttttcat
aaatttttcaattacTGGTAAAACTGGTAAAAGACTTATTTATAAATTAT
TAACTAGGTTGAGGGCTAGAAGGTTTATAAGGGTTTTTATAcgtttagaa
ttttttataaagGTCATTTAAATACATACACAtgttttttctgggaaaaa
tcAATGTATCTACTAATTCAAGAG

Coding sequence (CDS) from alignment at sc0000085_pilon:951800..955023+

>MSTRG.11689.6.p1 ID=MSTRG.11689.6.p1|Name=MSTRG.11689.6.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6201bp|location=Sequence derived from alignment at sc0000085_pilon:951800..955023+ (Clytia hemisphaerica_ch_hm2_pilon)
ttttggcTTGTATGGAAGGTCAAGTATAAAAATCAAGGATTCATGAAATA
TCTACCCAAAGTAAATTTCTCATCTGTTGTCACACCATATGAATATCAAA
TGAAAGGGGATTTTCTACCTCCTCACTTACGTAAACAAAAACTTATCCTT
TTCTTCACATCACATTTCTACAGTGACATCTGGAAAGGATTAGGTCCTGA
TGTATTACCTGGGTACACCCAAAATGCACATTGTAACATTAAAGAATGTT
CAATGACTTATGACAAAAAGAGAATAAACGAGGCAGATCTTGTGATATTT
CATGGTGTAGATTTTGAATATAAGAATTATACTGATAAACATTTCCAAGC
AATGTTAAAGAAGAAACCATCTCATCAACGATGGGTGTTTTGGATGCATG
AGACTCCTGTTTACTATCCAGAACCTGGaaattatgataatttattCAAT
TGGACTATGACATTCAGTCAAGGGTCTGATATCTACCACCCATATTACTC
TTACAGAAGGCTAACTGCTGATGATGACAGACCTGGAAAGTACATGAACT
ATGCTCTTGGAAGAACAAAGAAAATAGCCTGGATGGTAAGTCATTGTGGT
ATGACAAGAGGTGAATATGTTATGGAACTGCAAAAGTATACTGATGTTAC
TGTTTATGGTTTGTGTGGGGCATCTTATGATAATATGGCAGGCATATGTT
CTCGTGTTGAAAGTGAGTGTATGGATCAATTGAATCAATATCgattttat
cttgcttttgaAAACTCATTTTGTGAAGACTATGTGACAGAAAAGTATTA
TAAATTTGGCATAATGTATGGTGCTGTACCAATAGTGATGGGCGCTAGAT
ACAATGCATTGAATTCTATACCAGGGTCTTACATTGATGCTTCCACATTT
CCTTCAGTACAAGCTTTAGGAGAATACATTAATTTCCTCAGTGAAAATGA
TTATTACTACAATCAATATTTTGAGTGGAAAAATCACTTCAAAATGGACG
ATGGAATTGATAAGATTTGTTTACTTTGTCATGCAGCTCATGATGTAACT
AGAAAGTCTAGTTTCCATAAACATTTCCATGCTTTTTGGAGCAAACAAGC
AATGTGTGATCCCTATGAACCTGTCATTCAAAAGTTTGGTCACCAAATTG
AACAGTCCAAACTTTCTAGAATAGGCGAAGAATATTGCAGAAAAATGAGC
AATTACATGAACTATTCTGAAGCTTCAAAGCTTTATGATGAAGCACGAGT
TGCAGCAGATGCTGAAAACATTTACAACATTTTCACTGGGCTTCTCAAGA
AACCAGCAAACAAAatcgatcttttGGATATTGGATGTGGTACAGGCAAC
TACAGTTATTCTTTCATGAAAAATGGTTTACAAAGCATTACCATTGCTGA
TGCTTCTCAGGAGATGTTAAACTgtgccaaaatcaaaatgaaagtaTTTG
AAGATAAAGTCACTGCACAAGATATCATTTTACCAAACTTACCATTTCCT
GAGAAAAGCTTTGATGTTATTTCTTGCATGCAGGTTTTACACCATATTGA
TTCTGCTGCTTTGAAAGAATCAACCAAGGAACATCTTCAACGGGAAGACT
ATCCAAACATGCTTGAAACCTTGGGTCAAGCTTACAATGTTTTAAAACCT
GGTGGGGTACTAGTTATTGATGTTATGTTTGAAGAAAATTGTGAAAGTTT
TTGGTGGACCAGATTATGTCCAATAGCTGCTAAGGCGTTCAAAAGACTAA
GAATGAGCCAAAAGGACATGATTCAGTCCTTAGAGAAACTTAATTTTGAG
AATATTGTTTGCACATACTTTCCAGGCTCTCGCTTAGTTAAAAAGGAGAT
TTATGATGAAATTCAATGTATAGATGATCCTAAATGGAGATATTATCTTT
CTCAGTACAAATTGGTTGAAAAGTCTGGTGAATTAGATAACCTAATTAAA
ATTGTAAAAGACGCAGAGACTTCTGGAAAACTGAAAGAGTATTTTGACGA
TTGGAGTGAAAAGCTCTGGACACATGGGAATCATAGTGCTGtttttgcaa
tgaagcctttagcatagttttggcTTGTATGGAAGGTCAAGTATAAAAAT
CAAGGATTCATGAAATATCTACCCAAAGTAAATTTCTCATCTGTTGTCAC
ACCATATGAATATCAAATGAAAGGGGATTTTCTACCTCCTCACTTACGTA
AACAAAAACTTATCCTTTTCTTCACATCACATTTCTACAGTGACATCTGG
AAAGGATTAGGTCCTGATGTATTACCTGGGTACACCCAAAATGCACATTG
TAACATTAAAGAATGTTCAATGACTTATGACAAAAAGAGAATAAACGAGG
CAGATCTTGTGATATTTCATGGTGTAGATTTTGAATATAAGAATTATACT
GATAAACATTTCCAAGCAATGTTAAAGAAGAAACCATCTCATCAACGATG
GGTGTTTTGGATGCATGAGACTCCTGTTTACTATCCAGAACCTGGaaatt
atgataatttattCAATTGGACTATGACATTCAGTCAAGGGTCTGATATC
TACCACCCATATTACTCTTACAGAAGGCTAACTGCTGATGATGACAGACC
TGGAAAGTACATGAACTATGCTCTTGGAAGAACAAAGAAAATAGCCTGGA
TGGTAAGTCATTGTGGTATGACAAGAGGTGAATATGTTATGGAACTGCAA
AAGTATACTGATGTTACTGTTTATGGTTTGTGTGGGGCATCTTATGATAA
TATGGCAGGCATATGTTCTCGTGTTGAAAGTGAGTGTATGGATCAATTGA
ATCAATATCgattttatcttgcttttgaAAACTCATTTTGTGAAGACTAT
GTGACAGAAAAGTATTATAAATTTGGCATAATGTATGGTGCTGTACCAAT
AGTGATGGGCGCTAGATACAATGCATTGAATTCTATACCAGGGTCTTACA
TTGATGCTTCCACATTTCCTTCAGTACAAGCTTTAGGAGAATACATTAAT
TTCCTCAGTGAAAATGATTATTACTACAATCAATATTTTGAGTGGAAAAA
TCACTTCAAAATGGACGATGGAATTGATAAGATTTGTTTACTTTGTCATG
CAGCTCATGATGTAACTAGAAAGTCTAGTTTCCATAAACATTTCCATGCT
TTTTGGAGCAAACAAGCAATGTGTGATCCCTATGAACCTGTCATTCAAAA
GTTTGGTCACCAAATTGAACAGTCCAAACTTTCTAGAATAGGCGAAGAAT
ATTGCAGAAAAATGAGCAATTACATGAACTATTCTGAAGCTTCAAAGCTT
TATGATGAAGCACGAGTTGCAGCAGATGCTGAAAACATTTACAACATTTT
CACTGGGCTTCTCAAGAAACCAGCAAACAAAatcgatcttttGGATATTG
GATGTGGTACAGGCAACTACAGTTATTCTTTCATGAAAAATGGTTTACAA
AGCATTACCATTGCTGATGCTTCTCAGGAGATGTTAAACTgtgccaaaat
caaaatgaaagtaTTTGAAGATAAAGTCACTGCACAAGATATCATTTTAC
CAAACTTACCATTTCCTGAGAAAAGCTTTGATGTTATTTCTTGCATGCAG
GTTTTACACCATATTGATTCTGCTGCTTTGAAAGAATCAACCAAGGAACA
TCTTCAACGGGAAGACTATCCAAACATGCTTGAAACCTTGGGTCAAGCTT
ACAATGTTTTAAAACCTGGTGGGGTACTAGTTATTGATGTTATGTTTGAA
GAAAATTGTGAAAGTTTTTGGTGGACCAGATTATGTCCAATAGCTGCTAA
GGCGTTCAAAAGACTAAGAATGAGCCAAAAGGACATGATTCAGTCCTTAG
AGAAACTTAATTTTGAGAATATTGTTTGCACATACTTTCCAGGCTCTCGC
TTAGTTAAAAAGGAGATTTATGATGAAATTCAATGTATAGATGATCCTAA
ATGGAGATATTATCTTTCTCAGTACAAATTGGTTGAAAAGTCTGGTGAAT
TAGATAACCTAATTAAAATTGTAAAAGACGCAGAGACTTCTGGAAAACTG
AAAGAGTATTTTGACGATTGGAGTGAAAAGCTCTGGACACATGGGAATCA
TAGTGCTGtttttgcaatgaagcctttagcatagttttggcTTGTATGGA
AGGTCAAGTATAAAAATCAAGGATTCATGAAATATCTACCCAAAGTAAAT
TTCTCATCTGTTGTCACACCATATGAATATCAAATGAAAGGGGATTTTCT
ACCTCCTCACTTACGTAAACAAAAACTTATCCTTTTCTTCACATCACATT
TCTACAGTGACATCTGGAAAGGATTAGGTCCTGATGTATTACCTGGGTAC
ACCCAAAATGCACATTGTAACATTAAAGAATGTTCAATGACTTATGACAA
AAAGAGAATAAACGAGGCAGATCTTGTGATATTTCATGGTGTAGATTTTG
AATATAAGAATTATACTGATAAACATTTCCAAGCAATGTTAAAGAAGAAA
CCATCTCATCAACGATGGGTGTTTTGGATGCATGAGACTCCTGTTTACTA
TCCAGAACCTGGaaattatgataatttattCAATTGGACTATGACATTCA
GTCAAGGGTCTGATATCTACCACCCATATTACTCTTACAGAAGGCTAACT
GCTGATGATGACAGACCTGGAAAGTACATGAACTATGCTCTTGGAAGAAC
AAAGAAAATAGCCTGGATGGTAAGTCATTGTGGTATGACAAGAGGTGAAT
ATGTTATGGAACTGCAAAAGTATACTGATGTTACTGTTTATGGTTTGTGT
GGGGCATCTTATGATAATATGGCAGGCATATGTTCTCGTGTTGAAAGTGA
GTGTATGGATCAATTGAATCAATATCgattttatcttgcttttgaAAACT
CATTTTGTGAAGACTATGTGACAGAAAAGTATTATAAATTTGGCATAATG
TATGGTGCTGTACCAATAGTGATGGGCGCTAGATACAATGCATTGAATTC
TATACCAGGGTCTTACATTGATGCTTCCACATTTCCTTCAGTACAAGCTT
TAGGAGAATACATTAATTTCCTCAGTGAAAATGATTATTACTACAATCAA
TATTTTGAGTGGAAAAATCACTTCAAAATGGACGATGGAATTGATAAGAT
TTGTTTACTTTGTCATGCAGCTCATGATGTAACTAGAAAGTCTAGTTTCC
ATAAACATTTCCATGCTTTTTGGAGCAAACAAGCAATGTGTGATCCCTAT
GAACCTGTCATTCAAAAGTTTGGTCACCAAATTGAACAGTCCAAACTTTC
TAGAATAGGCGAAGAATATTGCAGAAAAATGAGCAATTACATGAACTATT
CTGAAGCTTCAAAGCTTTATGATGAAGCACGAGTTGCAGCAGATGCTGAA
AACATTTACAACATTTTCACTGGGCTTCTCAAGAAACCAGCAAACAAAat
cgatcttttGGATATTGGATGTGGTACAGGCAACTACAGTTATTCTTTCA
TGAAAAATGGTTTACAAAGCATTACCATTGCTGATGCTTCTCAGGAGATG
TTAAACTgtgccaaaatcaaaatgaaagtaTTTGAAGATAAAGTCACTGC
ACAAGATATCATTTTACCAAACTTACCATTTCCTGAGAAAAGCTTTGATG
TTATTTCTTGCATGCAGGTTTTACACCATATTGATTCTGCTGCTTTGAAA
GAATCAACCAAGGAACATCTTCAACGGGAAGACTATCCAAACATGCTTGA
AACCTTGGGTCAAGCTTACAATGTTTTAAAACCTGGTGGGGTACTAGTTA
TTGATGTTATGTTTGAAGAAAATTGTGAAAGTTTTTGGTGGACCAGATTA
TGTCCAATAGCTGCTAAGGCGTTCAAAAGACTAAGAATGAGCCAAAAGGA
CATGATTCAGTCCTTAGAGAAACTTAATTTTGAGAATATTGTTTGCACAT
ACTTTCCAGGCTCTCGCTTAGTTAAAAAGGAGATTTATGATGAAATTCAA
TGTATAGATGATCCTAAATGGAGATATTATCTTTCTCAGTACAAATTGGT
TGAAAAGTCTGGTGAATTAGATAACCTAATTAAAATTGTAAAAGACGCAG
AGACTTCTGGAAAACTGAAAGAGTATTTTGACGATTGGAGTGAAAAGCTC
TGGACACATGGGAATCATAGTGCTGtttttgcaatgaagcctttagcata
g
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11689MSTRG.11689Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11689.6.p1.exon1MSTRG.11689.6.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11689.6.p1.exon2MSTRG.11689.6.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11689.6.p1.exon3MSTRG.11689.6.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11689.6.p1MSTRG.11689.6.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085_pilongenomesc0000085_pilon:951800..955023 +